Takuro Nunoura

Takuro Nunoura

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Takuro Nunoura

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Microbial community and geochemical analyses of trans-trench sediments for understanding the roles of hadal environments.

ISME J 2020 Mar 11;14(3):740-756. Epub 2019 Dec 11.

Research Center for Bioscience and Nanoscience (CeBN), Japan Agency for Marine-Earth Science and Technology (JAMSTEC), 2-15 Natsushima-cho, Yokosuka, 237-0061, Kanagawa, Japan.

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http://dx.doi.org/10.1038/s41396-019-0564-zDOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC7031335PMC
March 2020

A new polycipivirus identified in Colobopsis shohki.

Arch Virol 2020 Mar 21;165(3):761-763. Epub 2019 Dec 21.

Faculty of Agriculture, Tokyo University of Agriculture and Technology, 3-5-8 Saiwai, Fuchu, Tokyo, Japan.

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http://dx.doi.org/10.1007/s00705-019-04510-8DOI Listing
March 2020

Bottleneck Size-Dependent Changes in the Genetic Diversity and Specific Growth Rate of a Rotavirus A Strain.

J Virol 2020 Mar 4. Epub 2020 Mar 4.

Department of Civil and Environmental Engineering, Graduate School of Engineering, Tohoku University, Aoba 6-6-06, Aramaki, Aoba-ku, Sendai, Miyagi 980-8579, Japan

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http://dx.doi.org/10.1128/JVI.02083-19DOI Listing
March 2020

dsRNA-seq Reveals Novel RNA Virus and Virus-Like Putative Complete Genome Sequences from Hymeniacidon sp. Sponge.

Microbes Environ 2020 ;35(2)

Research Center for Bioscience and Nanoscience (CeBN), Japan Agency for Marine-Earth Science and Technology (JAMSTEC).

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http://dx.doi.org/10.1264/jsme2.ME19132DOI Listing
January 2020

Viral Communities in the Global Deep Ocean Conveyor Belt Assessed by Targeted Viromics.

Front Microbiol 2019 21;10:1801. Epub 2019 Aug 21.

Institute for Extra-cutting-edge Science and Technology Avant-garde Research (X-star), Japan Agency for Marine-Earth Science and Technology (JAMSTEC), Yokosuka, Japan.

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http://dx.doi.org/10.3389/fmicb.2019.01801DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6712177PMC
August 2019

Viral Infections Boost Prokaryotic Biomass Production and Organic C Cycling in Hadal Trench Sediments.

Front Microbiol 2019 23;10:1952. Epub 2019 Aug 23.

Department of Sciences and Engineering of Materials, Environment and Urbanistics, Polytechnic University of Marche, Ancona, Italy.

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http://dx.doi.org/10.3389/fmicb.2019.01952DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6716271PMC
August 2019

Genomics insights into ecotype formation of ammonia-oxidizing archaea in the deep ocean.

Environ Microbiol 2019 02 31;21(2):716-729. Epub 2019 Jan 31.

Bigelow Laboratory for Ocean Sciences, 60 Bigelow Drive, East Boothbay, ME, 04544, USA.

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http://doi.wiley.com/10.1111/1462-2920.14518
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http://dx.doi.org/10.1111/1462-2920.14518DOI Listing
February 2019

Complete Genome Sequence of a Novel RNA Virus Identified from a Deep-Sea Animal, Osedax japonicus.

Microbes Environ 2018 Dec 13;33(4):446-449. Epub 2018 Oct 13.

Research and Development Center for Marine Biosciences, Japan Agency for Marine-Earth Science and Technology (JAMSTEC).

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https://www.jstage.jst.go.jp/article/jsme2/advpub/0/advpub_M
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http://dx.doi.org/10.1264/jsme2.ME18089DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6308001PMC
December 2018

Unveiling the RNA virosphere associated with marine microorganisms.

Mol Ecol Resour 2018 Nov 6;18(6):1444-1455. Epub 2018 Sep 6.

Research and Development Center for Marine Biosciences, Japan Agency for Marine-Earth Science and Technology (JAMSTEC), Yokosuka, Kanagawa, Japan.

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http://dx.doi.org/10.1111/1755-0998.12936DOI Listing
November 2018

d-Lactate electrochemical biosensor prepared by immobilization of thermostable dye-linked d-lactate dehydrogenase from Candidatus Caldiarchaeum subterraneum.

J Biosci Bioeng 2018 Oct 22;126(4):425-430. Epub 2018 Apr 22.

Division of Engineering, Faculty of Engineering, University of Fukui, 3-9-1 Bunkyo, Fukui 910-8507, Japan; Organization for Life Science Advancement Programs, University of Fukui, 3-9-1 Bunkyo, Fukui 910-8507, Japan.

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http://dx.doi.org/10.1016/j.jbiosc.2018.04.002DOI Listing
October 2018

Microbial Diversity in Sediments from the Bottom of the Challenger Deep, the Mariana Trench.

Microbes Environ 2018 Jul 25;33(2):186-194. Epub 2018 May 25.

Department of Subsurface Geobiological Analysis and Research, Japan Agency for Marine-Earth Science and Technology (JAMSTEC).

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http://dx.doi.org/10.1264/jsme2.ME17194DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6031389PMC
July 2018

Draft Genome Sequence of Mariprofundus micogutta Strain ET2.

Genome Announc 2018 May 17;6(20). Epub 2018 May 17.

Japan Agency for Marine-Earth Science and Technology (JAMSTEC), Yokosuka, Kanagawa, Japan.

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http://dx.doi.org/10.1128/genomeA.00342-18DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5958257PMC
May 2018

Metagenomic insights into zooplankton-associated bacterial communities.

Environ Microbiol 2018 02 27;20(2):492-505. Epub 2017 Oct 27.

Department of Limnology and Oceanography, Center of Functional Ecology University of Vienna, Althanstrasse 14, 1090 Vienna, Austria.

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http://dx.doi.org/10.1111/1462-2920.13944DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5836950PMC
February 2018

Genome-enabled metabolic reconstruction of dominant chemosynthetic colonizers in deep-sea massive sulfide deposits.

Environ Microbiol 2018 02 10;20(2):862-877. Epub 2018 Jan 10.

Ore Genesis Research Unit, Project Team for Development of New-generation Research Protocol for Submarine Resources, Japan Agency for Marine-Earth Science and Technology (JAMSTEC), Yokosuka, Kanagawa 237-0061, Japan.

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http://dx.doi.org/10.1111/1462-2920.14032DOI Listing
February 2018

A primordial and reversible TCA cycle in a facultatively chemolithoautotrophic thermophile.

Science 2018 Feb 1;359(6375):559-563. Epub 2018 Feb 1.

Department of Subsurface Geobiological Analysis and Research, Japan Agency for Marine-Earth Science and Technology (JAMSTEC), 2-15 Natsushima-cho, Yokosuka 237-0061, Japan.

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http://www.sciencemag.org/lookup/doi/10.1126/science.aao3407
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http://dx.doi.org/10.1126/science.aao3407DOI Listing
February 2018

Library Construction from Subnanogram DNA for Pelagic Sea Water and Deep-Sea Sediments.

Microbes Environ 2017 Dec 28;32(4):336-343. Epub 2017 Nov 28.

Research and Development (R&D) Center for Marine Biosciences, Japan Agency for Marine-Earth Science and Technology (JAMSTEC).

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http://dx.doi.org/10.1264/jsme2.ME17132DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5745018PMC
December 2017

Lebetimonas natsushimae sp. nov., a novel strictly anaerobic, moderately thermophilic chemoautotroph isolated from a deep-sea hydrothermal vent polychaete nest in the Mid-Okinawa Trough.

Syst Appl Microbiol 2017 Sep 4;40(6):352-356. Epub 2017 Jul 4.

Laboratory of Marine Environmental Microbiology, Graduate School of Agriculture, Kyoto University, Kyoto, Japan; Department of Subsurface Geobiological Analysis and Research (D-SUGAR), Japan Agency for Marine-Earth Science and Technology (JAMSTEC), Yokosuka, Japan. Electronic address:

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http://dx.doi.org/10.1016/j.syapm.2017.06.002DOI Listing
September 2017

Deep-sea vent phage DNA polymerase specifically initiates DNA synthesis in the absence of primers.

Proc Natl Acad Sci U S A 2017 03 6;114(12):E2310-E2318. Epub 2017 Mar 6.

Department of Biological Chemistry and Molecular Pharmacology, Harvard Medical School, Boston, MA 02115;

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http://dx.doi.org/10.1073/pnas.1700280114DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5373334PMC
March 2017

FLDS: A Comprehensive dsRNA Sequencing Method for Intracellular RNA Virus Surveillance.

Microbes Environ 2016 13;31(1):33-40. Epub 2016 Feb 13.

Research and Development Center for Marine Biosciences, Japan Agency for Marine-Earth Science and Technology (JAMSTEC).

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http://dx.doi.org/10.1264/jsme2.ME15171DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4791113PMC
December 2016

Halopiger thermotolerans sp. nov., a thermo-tolerant haloarchaeon isolated from commercial salt.

Int J Syst Evol Microbiol 2016 Dec 25;66(12):4975-4980. Epub 2016 Aug 25.

Research Institute of Industrial Technology, Toyo University, 2100 Kujirai, Kawagoe-shi, Saitama 350-8585, Japan.

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http://dx.doi.org/10.1099/ijsem.0.001455DOI Listing
December 2016

Virus-mediated archaeal hecatomb in the deep seafloor.

Sci Adv 2016 Oct 12;2(10):e1600492. Epub 2016 Oct 12.

Unité de Biologie Moléculaire du Gène chez les Extrêmophiles, Institut Pasteur, Paris 75015, France.

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http://dx.doi.org/10.1126/sciadv.1600492DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5061471PMC
October 2016

A new member of the family Totiviridae associated with arboreal ants (Camponotus nipponicus).

Arch Virol 2016 Jul 2;161(7):2043-5. Epub 2016 May 2.

Research and Development Center for Marine Biosciences, Japan Agency for Marine-Earth Science and Technology (JAMSTEC), 2-15 Natsushima, Yokosuka, Kanagawa, Japan.

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http://dx.doi.org/10.1007/s00705-016-2876-xDOI Listing
July 2016

Variance and potential niche separation of microbial communities in subseafloor sediments off Shimokita Peninsula, Japan.

Environ Microbiol 2016 06 10;18(6):1889-906. Epub 2015 Dec 10.

Department of Subsurface Geobiological Analysis and Research, Japan Agency for Marine-Earth Science and Technology (JAMSTEC), Yokosuka, Japan.

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http://dx.doi.org/10.1111/1462-2920.13096DOI Listing
June 2016

Enantioselective Utilization of D-Amino Acids by Deep-Sea Microorganisms.

Front Microbiol 2016 19;7:511. Epub 2016 Apr 19.

Research and Development Center for Marine Biosciences, Japan Agency for Marine-Earth Science and Technology Yokosuka, Japan.

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http://dx.doi.org/10.3389/fmicb.2016.00511DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4836201PMC
May 2016

Biochemical and genetic characterization of β-1,3 glucanase from a deep subseafloor Laceyella putida.

Appl Microbiol Biotechnol 2016 Jan 21;100(1):203-14. Epub 2015 Sep 21.

Research & Development Center for Marine Biosciences, Japan Agency for Marine-Earth and Science Technology (JAMSTEC), 2-15 Natsushima, Yokosuka, Kanagawa, 237-0061, Japan.

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http://dx.doi.org/10.1007/s00253-015-6983-5DOI Listing
January 2016

Distribution of eukaryotic serine racemases in the bacterial domain and characterization of a representative protein in Roseobacter litoralis Och 149.

Microbiology 2016 Jan 16;162(1):53-61. Epub 2015 Oct 16.

Research and Development Center for Marine Biosciences, Marine Functional Biology Group, Japan Agency for Marine-Earth Science and Technology (JAMSTEC), 2-15 Natsushima-cho, Yokosuka, 237-0061, Japan.

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http://www.microbiologyresearch.org/content/journal/micro/10
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http://dx.doi.org/10.1099/mic.0.000200DOI Listing
January 2016

Identification and genomic analysis of temperate Pseudomonas bacteriophage PstS-1 from the Japan trench at a depth of 7000 m.

Res Microbiol 2015 Nov 27;166(9):668-76. Epub 2015 May 27.

Japan Agency for Marine-Earth Science and Technology (JAMSTEC), 2-15 Natsushima-cho, Yokosuka, Kanagawa 237-0061, Japan.

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http://dx.doi.org/10.1016/j.resmic.2015.05.001DOI Listing
November 2015

Physiological and genomic features of a novel sulfur-oxidizing gammaproteobacterium belonging to a previously uncultivated symbiotic lineage isolated from a hydrothermal vent.

PLoS One 2014 18;9(8):e104959. Epub 2014 Aug 18.

Subsurface Geobiology & Advanced Research (SUGAR) Project, Extremobiosphere Research Program, Institute of Biogeosciences, Japan Agency for Marine-Earth Science & Technology (JAMSTEC), Yokosuka, Japan.

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http://journals.plos.org/plosone/article?id=10.1371/journal.pone.0104959PLOS
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4136832PMC
May 2015

Genomic characterization of a temperate phage of the psychrotolerant deep-sea bacterium Aurantimonas sp.

Extremophiles 2015 Jan 30;19(1):49-58. Epub 2014 Oct 30.

Japan Agency for Marine-Earth Science and Technology (JAMSTEC), 2-15 Natsushima-cho, Yokosuka, Kanagawa, 237-0061, Japan,

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http://dx.doi.org/10.1007/s00792-014-0702-5DOI Listing
January 2015

Variability of subseafloor viral abundance at the geographically and geologically distinct continental margins.

FEMS Microbiol Ecol 2014 Apr 23;88(1):60-8. Epub 2013 Dec 23.

Subsurface Geobiology and Advanced Research (SUGAR) Project, Japan Agency for Marine-Earth Science and Technology, Yokosuka, Japan; Department of Earth and Planetary Science, Graduate School of Science, The University of Tokyo, Tokyo, Japan.

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https://academic.oup.com/femsec/article-lookup/doi/10.1111/1
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http://dx.doi.org/10.1111/1574-6941.12269DOI Listing
April 2014

Methylomarinovum caldicuralii gen. nov., sp. nov., a moderately thermophilic methanotroph isolated from a shallow submarine hydrothermal system, and proposal of the family Methylothermaceae fam. nov.

Int J Syst Evol Microbiol 2014 Mar 18;64(Pt 3):989-99. Epub 2013 Dec 18.

Institute of Biogeosciences, Japan Agency for Marine-Earth Science & Technology (JAMSTEC), 2-15 Natsushima-cho, Yokosuka 237-0061, Japan.

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http://dx.doi.org/10.1099/ijs.0.058172-0DOI Listing
March 2014

Molecular biological and isotopic biogeochemical prognoses of the nitrification-driven dynamic microbial nitrogen cycle in hadopelagic sediments.

Environ Microbiol 2013 Nov 29;15(11):3087-107. Epub 2013 May 29.

Subsurface Geobiology & Advanced Research (SUGAR) Project, Extremobiosphere Research Program, Institute of Biogeosciences, Japan Agency for Marine-Earth Science & Technology (JAMSTEC), 2-15 Natsushima-cho, Yokosuka, 237-0061, Japan.

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http://dx.doi.org/10.1111/1462-2920.12152DOI Listing
November 2013

The first microbiological contamination assessment by deep-sea drilling and coring by the D/V Chikyu at the Iheya North hydrothermal field in the Mid-Okinawa Trough (IODP Expedition 331).

Front Microbiol 2013 8;4:327. Epub 2013 Nov 8.

Subsurface Geobiology Advanced Research Project, Japan Agency for Marine-Earth Science and Technology Yokosuka, Japan ; Department of Earth and Planetary Science, University of Tokyo Tokyo, Japan.

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http://dx.doi.org/10.3389/fmicb.2013.00327DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3820981PMC
November 2013

Metagenomic analysis of viral communities in (hado)pelagic sediments.

PLoS One 2013 27;8(2):e57271. Epub 2013 Feb 27.

Japan Agency for Marine-Earth Science and Technology, Yokosuka, Kanagawa, Japan.

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http://journals.plos.org/plosone/article?id=10.1371/journal.pone.0057271PLOS
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3584133PMC
September 2013

Microbial diversity in deep-sea methane seep sediments presented by SSU rRNA gene tag sequencing.

Microbes Environ 2012 18;27(4):382-90. Epub 2012 Apr 18.

Subsurface Geobiology & Advanced Research Project, Extremobiosphere Research Program, Institute of Biogeosciences, Japan Agency for Marine-Earth Science & Technology, 2–15 Natsushima-cho, Yokosuka 237–0061, Japan.

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http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4103545PMC
http://dx.doi.org/10.1264/jsme2.me12032DOI Listing
June 2013

Sunxiuqinia faeciviva sp. nov., a facultatively anaerobic organoheterotroph of the Bacteroidetes isolated from deep subseafloor sediment.

Int J Syst Evol Microbiol 2013 May 17;63(Pt 5):1602-9. Epub 2012 Aug 17.

Subsurface Geobiology Advanced Research (SUGAR) Project, Institute of Biogeosciences, Japan Agency for Marine-Earth Science & Technology (JAMSTEC), 2-15 Natsushima-cho, Yokosuka 237-0061, Japan.

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http://ijs.microbiologyresearch.org/content/journal/ijsem/10
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http://dx.doi.org/10.1099/ijs.0.044065-0DOI Listing
May 2013

Genome sequence of a novel deep-sea vent epsilonproteobacterial phage provides new insight into the co-evolution of Epsilonproteobacteria and their phages.

Extremophiles 2013 May 20;17(3):405-19. Epub 2013 Mar 20.

Subsurface Geobiology Advanced Research (SUGAR) Team, Extremobiosphere Research Program, Institute of Biogeosciences, Japan Agency for Marine-Earth Science and Technology (JAMSTEC), Yokosuka, Kanagawa 237-0061, Japan.

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http://dx.doi.org/10.1007/s00792-013-0529-5DOI Listing
May 2013

Methylomarinum vadi gen. nov., sp. nov., a methanotroph isolated from two distinct marine environments.

Int J Syst Evol Microbiol 2013 Mar 15;63(Pt 3):1073-82. Epub 2012 Jun 15.

Institute of Biogeosciences, Japan Agency for Marine-Earth Science & Technology (JAMSTEC), 2-15 Natsushima-cho, Yokosuka 237-0061, Japan.

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http://ijs.microbiologyresearch.org/content/journal/ijsem/10
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http://dx.doi.org/10.1099/ijs.0.040568-0DOI Listing
March 2013

Geofilum rubicundum gen. nov., sp. nov., isolated from deep subseafloor sediment.

Int J Syst Evol Microbiol 2012 May 24;62(Pt 5):1075-80. Epub 2011 Jun 24.

Subsurface Geobiology Advanced Research (SUGAR) project, Japan Agency for Marine-Earth Science and Technology (JAMSTEC), 2-15 Natsushima-cho, Yokosuka 237-0061, Japan.

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http://ijs.microbiologyresearch.org/content/journal/ijsem/10
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http://dx.doi.org/10.1099/ijs.0.032326-0DOI Listing
May 2012

Domain-level identification and quantification of relative prokaryotic cell abundance in microbial communities by Micro-FTIR spectroscopy.

Environ Microbiol Rep 2012 Feb 25;4(1):42-9. Epub 2011 Aug 25.

Department of Earth Science and Astronomy, The University of Tokyo, 3-8-1 Komaba, Meguro-ku, Tokyo 153-8902, Japan.

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http://dx.doi.org/10.1111/j.1758-2229.2011.00277.xDOI Listing
February 2012

Subseafloor microbial communities in methane hydrate-bearing sediment at two distinct locations (ODP Leg204) in the cascadia margin.

Microbes Environ 2008 ;23(4):317-25

Subground Animalcule Retrieval (SUGAR) Program, Extremobiosphere Research Center, Japan Agency for Marine-Earth Science & Technology (JAMSTEC) 2-15 Natsushima-cho, Yokosuka 237-0061, Japan.

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http://dx.doi.org/10.1264/jsme2.me08514DOI Listing
July 2011

Insights into the evolution of Archaea and eukaryotic protein modifier systems revealed by the genome of a novel archaeal group.

Nucleic Acids Res 2011 Apr 15;39(8):3204-23. Epub 2010 Dec 15.

Subsurface Geobiology & Advanced Research Project, Institute of Biogeosciences, Japan Agency for Marine-Earth Science & Technology, 2-15 Natsushima-cho, Yokosuka 237-0061, Japan.

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http://dx.doi.org/10.1093/nar/gkq1228DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3082918PMC
April 2011

Molecular characterization of potential nitrogen fixation by anaerobic methane-oxidizing archaea in the methane seep sediments at the number 8 Kumano Knoll in the Kumano Basin, offshore of Japan.

Appl Environ Microbiol 2009 Nov 25;75(22):7153-62. Epub 2009 Sep 25.

Subground Geobiology and Advanced Research Project, Institute of Biogeosciences, Japan Agency for Marine-Earth Science and Technology, 2-15 Natsushima-cho, Yokosuka 237-0061, Japan.

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http://dx.doi.org/10.1128/AEM.01184-09DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2786543PMC
November 2009

Subseafloor microbial communities associated with rapid turbidite deposition in the Gulf of Mexico continental slope (IODP Expedition 308).

FEMS Microbiol Ecol 2009 Sep 4;69(3):410-24. Epub 2009 Jul 4.

Subsurface Geobiology and Advanced Research (SUGAR) Project, Extremobiosphere Research Program, Institute of Biogeosciences, Japan Agency for Marine-Earth Science and Technology (JAMSTEC), Yokosuka 237-0061, Japan.

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http://dx.doi.org/10.1111/j.1574-6941.2009.00718.xDOI Listing
September 2009

Development of 16S rRNA gene-targeted primers for detection of archaeal anaerobic methanotrophs (ANMEs).

FEMS Microbiol Lett 2009 Aug 9;297(1):31-7. Epub 2009 May 9.

Subsurface Geobiology Advanced Research Team, Extremobiosphere Research Program, Institute of Biogeosciences, Japan Agency for Marine-Earth Science and Technology, Kanagawa, Japan.

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http://dx.doi.org/10.1111/j.1574-6968.2009.01648.xDOI Listing
August 2009

Comparison of microbial communities associated with phase-separation-induced hydrothermal fluids at the Yonaguni Knoll IV hydrothermal field, the Southern Okinawa Trough.

FEMS Microbiol Ecol 2009 Mar 9;67(3):351-70. Epub 2009 Jan 9.

Subground Animalcule Retrieval (SUGAR) Program, Extremobiosphere Research Center, Japan Agency for Marine-Earth Science & Technology (JAMSTEC), Yokosuka, Japan.

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http://dx.doi.org/10.1111/j.1574-6941.2008.00636.xDOI Listing
March 2009

[Archaea plays important roles in global material circulation].

Tanpakushitsu Kakusan Koso 2009 Feb;54(2):114-9

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February 2009

Exilispira thermophila gen. nov., sp. nov., an anaerobic, thermophilic spirochaete isolated from a deep-sea hydrothermal vent chimney.

Int J Syst Evol Microbiol 2008 Oct;58(Pt 10):2258-65

Subground Animalcule Retrieval (SUGAR) Program, Extremobiosphere Research Center, Japan Agency for Marine-Earth Science and Technology (JAMSTEC), Yokosuka, Kanagawa 237-0061, Japan.

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http://dx.doi.org/10.1099/ijs.0.65727-0DOI Listing
October 2008

Cell proliferation at 122 degrees C and isotopically heavy CH4 production by a hyperthermophilic methanogen under high-pressure cultivation.

Proc Natl Acad Sci U S A 2008 Aug 29;105(31):10949-54. Epub 2008 Jul 29.

Subground Animalcule Retrieval Program, Japan Agency for Marine-Earth Science and Technology, 2-15 Natsushima-cho, Yokosuka 237-0061, Japan.

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http://dx.doi.org/10.1073/pnas.0712334105DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2490668PMC
August 2008

Quantification of mcrA by fluorescent PCR in methanogenic and methanotrophic microbial communities.

FEMS Microbiol Ecol 2008 May 3;64(2):240-7. Epub 2008 Mar 3.

Subground Animalcule Retrieval (SUGAR) Program, Extremobiosphere Research Center, Japan Agency for Marine-Earth Science and Technology (JAMSTEC), Yokosuka, Japan.

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http://dx.doi.org/10.1111/j.1574-6941.2008.00451.xDOI Listing
May 2008

Thermosulfidibacter takaii gen. nov., sp. nov., a thermophilic, hydrogen-oxidizing, sulfur-reducing chemolithoautotroph isolated from a deep-sea hydrothermal field in the Southern Okinawa Trough.

Int J Syst Evol Microbiol 2008 Mar;58(Pt 3):659-65

Subground Animalcule Retrieval (SUGAR) Program, Extremobiosphere Research Center, Japan Agency for Marine-Earth Science and Technology, 2-15 Natsushima-cho, Yokosuka 237-0061, Japan.

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http://dx.doi.org/10.1099/ijs.0.65349-0DOI Listing
March 2008

Hydrogenivirga okinawensis sp. nov., a thermophilic sulfur-oxidizing chemolithoautotroph isolated from a deep-sea hydrothermal field, Southern Okinawa Trough.

Int J Syst Evol Microbiol 2008 Mar;58(Pt 3):676-81

Subground Animalcule Retrieval (SUGAR) Program, Extremobiosphere Research Center, Japan Agency for Marine-Earth Science & Technology, 2-15 Natsushima-cho, Yokosuka 237-0061, Japan.

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http://dx.doi.org/10.1099/ijs.0.64615-0DOI Listing
March 2008

Desulfothermus okinawensis sp. nov., a thermophilic and heterotrophic sulfate-reducing bacterium isolated from a deep-sea hydrothermal field.

Int J Syst Evol Microbiol 2007 Oct;57(Pt 10):2360-4

Subground Animalcule Retrieval (SUGAR) Program, Extremobiosphere Research Center, Japan Agency for Marine-Earth Science & Technology (JAMSTEC), Yokosuka 237-0061, Japan.

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http://ijs.microbiologyresearch.org/content/journal/ijsem/10
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http://dx.doi.org/10.1099/ijs.0.64781-0DOI Listing
October 2007

Marinitoga okinawensis sp. nov., a novel thermophilic and anaerobic heterotroph isolated from a deep-sea hydrothermal field, Southern Okinawa Trough.

Int J Syst Evol Microbiol 2007 Mar;57(Pt 3):467-71

Subground Animalcule Retrieval (SUGAR) Program, Extremobiosphere Research Center, Japan Agency for Marine-Earth Science & Technology (JAMSTEC), 2-15 Natsushima-cho, Yokosuka 237-0061, Japan.

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http://dx.doi.org/10.1099/ijs.0.64640-0DOI Listing
March 2007

Microbial community in a sediment-hosted CO2 lake of the southern Okinawa Trough hydrothermal system.

Proc Natl Acad Sci U S A 2006 Sep 7;103(38):14164-9. Epub 2006 Sep 7.

Subground Animalcule Retrieval (SUGAR) Program, Extremobiosphere Research Center, Japan Agency for Marine-Earth Science and Technology (JAMSTEC), Yokosuka 237-0061, Japan.

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http://dx.doi.org/10.1073/pnas.0606083103DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC1599929PMC
September 2006

Sulfurivirga caldicuralii gen. nov., sp. nov., a novel microaerobic, thermophilic, thiosulfate-oxidizing chemolithoautotroph, isolated from a shallow marine hydrothermal system occurring in a coral reef, Japan.

Int J Syst Evol Microbiol 2006 Aug;56(Pt 8):1921-9

Subground Animalcule Retrieval SUGAR Program, Japan Agency for Marine-Earth Science and Technology, JAMSTEC, Yokosuka 237-0061, Japan.

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http://dx.doi.org/10.1099/ijs.0.64297-0DOI Listing
August 2006

Quantification of mcrA by quantitative fluorescent PCR in sediments from methane seep of the Nankai Trough.

FEMS Microbiol Ecol 2006 Jul;57(1):149-57

Subground Animalcule Retrieval Program, Extremobiosphere Research Center, Japan Agency for Marine-Earth Science & Technology, Yokosuka, Japan.

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http://dx.doi.org/10.1111/j.1574-6941.2006.00101.xDOI Listing
July 2006

Biogeographical distribution and diversity of microbes in methane hydrate-bearing deep marine sediments on the Pacific Ocean Margin.

Proc Natl Acad Sci U S A 2006 Feb 13;103(8):2815-20. Epub 2006 Feb 13.

Subground Animalcule Retrieval Project, Extremobiosphere Research Center, Japan Agency for Marine-Earth Science and Technology, Yokosuka 237-0061, Japan.

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http://dx.doi.org/10.1073/pnas.0511033103DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC1413818PMC
February 2006

Genetic and functional properties of uncultivated thermophilic crenarchaeotes from a subsurface gold mine as revealed by analysis of genome fragments.

Environ Microbiol 2005 Dec;7(12):1967-84

Subground Animalcule Retrieval (SUGAR) Program, Extremebiosphere Research Center, Japan Agency for Marine-Earth Science and Technology (JAMSTEC), 2-15 Natsushima-cho, Jokosuka, Japan.

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http://dx.doi.org/10.1111/j.1462-2920.2005.00881.xDOI Listing
December 2005

Distribution, phylogenetic diversity and physiological characteristics of epsilon-Proteobacteria in a deep-sea hydrothermal field.

Environ Microbiol 2005 Oct;7(10):1619-32

Laboratory of Marine Microbiology, Division of Applied Biosciences, Graduate School of Agriculture, Kyoto University, Oiwake-cho, Kitashirakawa, Kyoto 606-8502, Japan.

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http://doi.wiley.com/10.1111/j.1462-2920.2005.00856.x
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http://dx.doi.org/10.1111/j.1462-2920.2005.00856.xDOI Listing
October 2005

Variability in microbial community and venting chemistry in a sediment-hosted backarc hydrothermal system: Impacts of subseafloor phase-separation.

FEMS Microbiol Ecol 2005 Sep;54(1):141-55

Laboratory of Marine Microbiology, Division of Applied Biosciences, Graduate School of Agriculture, Kyoto University, Oiwake-cho, Kitashirakawa, Sakyo-ku, Japan.

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http://dx.doi.org/10.1016/j.femsec.2005.03.007DOI Listing
September 2005

Cytochrome aa3 in facultatively aerobic and hyperthermophilic archaeon Pyrobaculum oguniense.

Can J Microbiol 2005 Aug;51(8):621-7

Laboratory of Marine Microbiology, Graduate School of Agriculture, Kyoto University, Japan.

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http://dx.doi.org/10.1139/w05-040DOI Listing
August 2005

Spatial distribution of marine crenarchaeota group I in the vicinity of deep-sea hydrothermal systems.

Appl Environ Microbiol 2004 Apr;70(4):2404-13

Subground Animalcule Retrieval Project, Frontier Research System for Extremophiles, Japan Marine Science & Technology Center, Yokosuka 237-0061, Japan.

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http://www.ncbi.nlm.nih.gov/pmc/articles/PMC383094PMC
http://dx.doi.org/10.1128/aem.70.4.2404-2413.2004DOI Listing
April 2004

An archaeal homing endonuclease I-PogI cleaves at the insertion site of the neighboring intron, which has no nested open reading frame.

FEBS Lett 2003 Jun;544(1-3):165-70

Division of Applied Biosciences, Graduate School of Agriculture, Kyoto University, Japan.

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http://dx.doi.org/10.1016/s0014-5793(03)00497-6DOI Listing
June 2003

Regulation of the aerobic respiratory chain in the facultatively aerobic and hyperthermophilic archaeon Pyrobaculum oguniense.

Microbiology 2003 Mar;149(Pt 3):673-688

Laboratory of Marine Microbiology, Graduate School of Agriculture, Kyoto University, Kyoto 606-8502, Japan.

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http://dx.doi.org/10.1099/mic.0.26000-0DOI Listing
March 2003

Isolation and phylogenetic diversity of members of previously uncultivated epsilon-Proteobacteria in deep-sea hydrothermal fields.

FEMS Microbiol Lett 2003 Jan;218(1):167-74

Japan Marine Science and Technology Center, 2-15 Natsushima-cho, Yokosuka 237-0061, Japan.

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http://dx.doi.org/10.1111/j.1574-6968.2003.tb11514.xDOI Listing
January 2003

Thermaerobacter nagasakiensis sp. nov., a novel aerobic and extremely thermophilic marine bacterium.

Arch Microbiol 2002 Apr 7;177(4):339-44. Epub 2002 Feb 7.

Laboratory of Marine Microbiology, Graduate School of Agriculture, Kyoto University, Kyoto 606-8502, Japan.

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http://dx.doi.org/10.1007/s00203-002-0398-2DOI Listing
April 2002