Takeshi Kawashima

Takeshi Kawashima

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Takeshi Kawashima

Takeshi Kawashima

Publications by authors named "Takeshi Kawashima"

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54Publications

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Rearrangement analysis of multiple bacterial genomes.

BMC Bioinformatics 2019 Dec 27;20(Suppl 23):631. Epub 2019 Dec 27.

National Institute of Genetics, Mishima, Shizuoka, 411-8540, Japan.

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http://dx.doi.org/10.1186/s12859-019-3293-4DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6933940PMC
December 2019

Independent evolution of genomic characters during major metazoan transitions.

Dev Biol 2017 07 25;427(2):179-192. Epub 2016 Nov 25.

National Institute of Genetics, Mishima, Japan.

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http://dx.doi.org/10.1016/j.ydbio.2016.11.012DOI Listing
July 2017

Bivalve-specific gene expansion in the pearl oyster genome: implications of adaptation to a sessile lifestyle.

Zoological Lett 2016 18;2. Epub 2016 Feb 18.

Marine Genomics Unit, Okinawa Institute of Science and Technology Graduate University, Onna, Okinawa 904-0495 Japan ; Present Address: Graduate School of Life and Environmental Science, University of Tsukuba, Ibaraki, 305-8572 Japan.

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http://dx.doi.org/10.1186/s40851-016-0039-2DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4759782PMC
February 2016

Molecular basis of canalization in an ascidian species complex adapted to different thermal conditions.

Sci Rep 2015 Nov 18;5:16717. Epub 2015 Nov 18.

Department of Zoology, University of Oxford, South Parks Road, Oxford OX1 3PS, United Kingdom.

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http://dx.doi.org/10.1038/srep16717DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4649386PMC
November 2015

On a possible evolutionary link of the stomochord of hemichordates to pharyngeal organs of chordates.

Genesis 2014 Dec 4;52(12):925-34. Epub 2014 Nov 4.

Marine Genomics Unit, Okinawa Institute of Science and Technology Graduate University, Onna, Okinawa, Japan.

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http://dx.doi.org/10.1002/dvg.22831DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5673098PMC
December 2014

A cDNA resource for gene expression studies of a hemichordate, Ptychodera flava.

Zoolog Sci 2014 Jul;31(7):414-20

1 Marine Biological Laboratory, Graduate School of Science, Hiroshima University, Onomichi, Hiroshima 722-0073, Japan.

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http://www.bioone.org/doi/abs/10.2108/zs130262
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http://dx.doi.org/10.2108/zs130262DOI Listing
July 2014

Initiating the mollusk genomics annotation community: toward creating the complete curated gene-set of the Japanese Pearl Oyster, Pinctada fucata.

Zoolog Sci 2013 Oct;30(10):794-6

1 Marine Genomics Unit, Okinawa Institute of Science and Technology Graduate University, Onna, Okinawa 904-0495, Japan.

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http://dx.doi.org/10.2108/zsj.30.794DOI Listing
October 2013

MarinegenomicsDB: an integrated genome viewer for community-based annotation of genomes.

Zoolog Sci 2013 Oct;30(10):797-800

Marine Genomics Unit, Okinawa Institute of Science and Technology, Tancha 1919-1, Onna, Kunigami, Okinawa 904-0495, Japan.

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http://dx.doi.org/10.2108/zsj.30.797DOI Listing
October 2013

A methodical microarray design enables surveying of expression of a broader range of genes in Ciona intestinalis.

Gene 2013 Apr 4;519(1):82-90. Epub 2013 Feb 4.

Department of Bioinformatics, Medical Research Institute, Tokyo Medical and Dental University, Bunkyo-ku, Tokyo 113-8510, Japan.

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http://dx.doi.org/10.1016/j.gene.2013.01.042DOI Listing
April 2013

A genome-wide survey of photoreceptor and circadian genes in the coral, Acropora digitifera.

Gene 2013 Feb 20;515(2):426-31. Epub 2012 Dec 20.

Marine Genomics Unit, Okinawa Institute of Science and Technology, Onna, Okinawa 904-0495, Japan.

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http://dx.doi.org/10.1016/j.gene.2012.12.038DOI Listing
February 2013

The complex NOD-like receptor repertoire of the coral Acropora digitifera includes novel domain combinations.

Mol Biol Evol 2013 Jan 30;30(1):167-76. Epub 2012 Aug 30.

Marine Genomics Unit, Okinawa Institute of Science and Technology Graduate University, Onna, Okinawa, Japan.

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http://dx.doi.org/10.1093/molbev/mss213DOI Listing
January 2013

The repertoire of chemical defense genes in the coral Acropora digitifera genome.

Zoolog Sci 2012 Aug;29(8):510-7

Marine Genomics Unit, Okinawa Institute of Science and Technology Graduate University, Onna, Okinawa 904-0495, Japan.

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http://dx.doi.org/10.2108/zsj.29.510DOI Listing
August 2012

A genomewide survey of bHLH transcription factors in the coral Acropora digitifera identifies three novel orthologous families, pearl, amber, and peridot.

Dev Genes Evol 2012 Apr 15;222(2):63-76. Epub 2012 Mar 15.

Marine Genomics Unit, Okinawa Institute of Science and Technology Graduate University, Onna, Okinawa, 904-0495, Japan.

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http://dx.doi.org/10.1007/s00427-012-0388-6DOI Listing
April 2012

Using the Acropora digitifera genome to understand coral responses to environmental change.

Nature 2011 Jul 24;476(7360):320-3. Epub 2011 Jul 24.

Marine Genomics Unit, Okinawa Institute of Science and Technology Promotion Corporation, Onna, Okinawa 904-0412, Japan.

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http://dx.doi.org/10.1038/nature10249DOI Listing
July 2011

The dynamic genome of Hydra.

Nature 2010 Mar 14;464(7288):592-6. Epub 2010 Mar 14.

US Department of Energy Joint Genome Institute, Walnut Creek, California 94598, USA.

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http://dx.doi.org/10.1038/nature08830DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4479502PMC
March 2010

Domain shuffling and the evolution of vertebrates.

Genome Res 2009 Aug 14;19(8):1393-403. Epub 2009 May 14.

Okinawa Institute of Science and Technology, Uruma, Okinawa, Japan.

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http://dx.doi.org/10.1101/gr.087072.108DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2720177PMC
August 2009

[Effect of ISO15189 accreditation in Clinical Laboratory Center of Toyama University Hospital].

Rinsho Byori 2009 Aug;57(8):752-60

Clinical Laboratory Center, Toyama University Hospital, Toyama 930-0194, Japan.

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August 2009

Perforated mitral valve aneurysm associated with Libman-Sacks endocarditis.

Intern Med 2008 16;47(18):1605-8. Epub 2008 Sep 16.

Division of Cardiology, Department of Medicine, Kohka Public Hospital, Kohka.

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http://dx.doi.org/10.2169/internalmedicine.47.1068DOI Listing
January 2009

[Decoding of amphioxus genome and evolution of chordates].

Tanpakushitsu Kakusan Koso 2009 Jan;54(1):20-8

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January 2009

Comparative pair-wise domain-combinations for screening the clade specific domain-architectures in metazoan genomes.

Genome Inform 2007 ;19:50-60

Human Genome Center, Institute of Medical Science, University of Tokyo, 4-6-1 Shirokanedai, Minato-ku, Tokyo 108-8639, Japan.

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July 2008

The transcription/migration interface in heart precursors of Ciona intestinalis.

Science 2008 Jun;320(5881):1349-52

Department of Molecular and Cell Biology, Division of Genetics, Genomics and Development, Center for Integrative Genomics, University of California, Berkeley, CA 94720, USA.

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http://dx.doi.org/10.1126/science.1158170DOI Listing
June 2008

Gene expression profile during the life cycle of the urochordate Ciona intestinalis.

Dev Biol 2007 Aug 25;308(2):572-82. Epub 2007 May 25.

Division of Innovative Research, Creative Research Initiative Sousei, Hokkaido University, N21W10 Kita-ku, Sapporo 001-0021, Japan.

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http://dx.doi.org/10.1016/j.ydbio.2007.05.022DOI Listing
August 2007

Further EST analysis of endocrine genes that are preferentially expressed in the neural complex of Ciona intestinalis: receptor and enzyme genes associated with endocrine system in the neural complex.

Gen Comp Endocrinol 2007 Jan 27;150(2):233-45. Epub 2006 Oct 27.

Department of Zoology, Graduate School of Science, Kyoto University, Kyoto 606-8502, Japan.

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http://dx.doi.org/10.1016/j.ygcen.2006.08.010DOI Listing
January 2007

Chromosomal mapping of 170 BAC clones in the ascidian Ciona intestinalis.

Genome Res 2006 Feb 14;16(2):297-303. Epub 2005 Dec 14.

Department of Zoology, Graduate School of Science, Kyoto University, Sakyo-ku, Kyoto 606-8502, Japan.

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http://dx.doi.org/10.1101/gr.4156606DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC1361726PMC
February 2006

[Recent advances in developmental genomics of the ascidian Ciona intestinalis].

Tanpakushitsu Kakusan Koso 2005 Dec;50(16 Suppl):2153-9

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December 2005

An integrated database of the ascidian, Ciona intestinalis: towards functional genomics.

Zoolog Sci 2005 Aug;22(8):837-43

Department of Zoology, Graduate School of Science, Kyoto University, Kyoto 606-8502, Japan.

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http://dx.doi.org/10.2108/zsj.22.837DOI Listing
August 2005

Molecular cytogenetic characterization of Ciona intestinalis chromosomes.

Zoolog Sci 2005 May;22(5):511-6

CREST, Japan Science and Technology Agency, Kawaguchi, Saitama, Japan.

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http://dx.doi.org/10.2108/zsj.22.511DOI Listing
May 2005

Dynamic changes in developmental gene expression in the basal chordate Ciona intestinalis.

Dev Growth Differ 2005 Apr;47(3):187-99

Department of Zoology, Graduate School of Science, Kyoto University, Sakyo-ku, Kyoto 606-8502, Japan.

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http://dx.doi.org/10.1111/j.1440-169X.2005.00794.xDOI Listing
April 2005

Telomerase-specific replication-selective virotherapy for human cancer.

Clin Cancer Res 2004 Jan;10(1 Pt 1):285-92

Division of Surgical Oncology, Department of Surgery, Okayama University Graduate School of Medicine and Dentistry, Okayama, Japan.

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http://clincancerres.aacrjournals.org/content/10/1/285.full.
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http://dx.doi.org/10.1158/1078-0432.ccr-1075-3DOI Listing
January 2004

Large scale EST analyses in Ciona intestinalis: its application as Northern blot analyses.

Dev Genes Evol 2003 Jun 8;213(5-6):314-8. Epub 2003 May 8.

Department of Zoology, Graduate School of Science, Kyoto University, Sakyo-ku, Kyoto 606-8502, Japan.

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http://dx.doi.org/10.1007/s00427-003-0327-7DOI Listing
June 2003

A genomewide survey of developmentally relevant genes in Ciona intestinalis. VIII. Genes for PI3K signaling and cell cycle.

Dev Genes Evol 2003 Jun 13;213(5-6):284-90. Epub 2003 May 13.

Institute for Chemical Research, Kyoto University, Uji, Kyoto 611-0011, Japan.

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http://dx.doi.org/10.1007/s00427-003-0323-yDOI Listing
June 2003

Ectopic p21sdi1 gene transfer induces retinoic acid receptor beta expression and sensitizes human cancer cells to retinoid treatment.

Int J Cancer 2003 Mar;103(6):833-9

Division of Surgical Oncology, Department of Surgery, Okayama University Graduate School of Medicine and Dentistry, Okayama, Japan.

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http://dx.doi.org/10.1002/ijc.10892DOI Listing
March 2003

The draft genome of Ciona intestinalis: insights into chordate and vertebrate origins.

Science 2002 Dec;298(5601):2157-67

U.S. Department of Energy Joint Genome Institute, 2800 Mitchell Drive, Walnut Creek, CA 94598, USA.

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http://dx.doi.org/10.1126/science.1080049DOI Listing
December 2002

A cDNA resource from the basal chordate Ciona intestinalis.

Genesis 2002 Aug;33(4):153-4

Department of Zoology, Graduate School of Science, Kyoto University, Sakyo-ku, Kyoto, Japan.

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http://dx.doi.org/10.1002/gene.10119DOI Listing
August 2002

Update of MAGEST: Maboya Gene Expression patterns and Sequence Tags.

Nucleic Acids Res 2002 Jan;30(1):119-20

Department of Zoology, Graduate School of Science, Kyoto University, Sakyo-ku, Kyoto 606-8502, Japan.

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http://www.ncbi.nlm.nih.gov/pmc/articles/PMC99134PMC
http://dx.doi.org/10.1093/nar/30.1.119DOI Listing
January 2002