Takeshi Itoh

Takeshi Itoh

UNVERIFIED PROFILE

Are you Takeshi Itoh?   Register this Author

Register author
Takeshi Itoh

Takeshi Itoh

Publications by authors named "Takeshi Itoh"

Are you Takeshi Itoh?   Register this Author

100Publications

1995Reads

24Profile Views

TASUKE+: a web-based platform for exploring GWAS results and large-scale resequencing data.

DNA Res 2019 Sep 20. Epub 2019 Sep 20.

Advanced Analysis Center, National Agriculture and Food Research Organization, Tsukuba, Ibaraki, Japan.

View Article

Download full-text PDF

Source
http://dx.doi.org/10.1093/dnares/dsz022DOI Listing
September 2019

Genome editing in plants by engineered CRISPR-Cas9 recognizing NG PAM.

Nat Plants 2019 01 10;5(1):14-17. Epub 2018 Dec 10.

Plant Genome Engineering Research Unit, Institute of Agrobiological Sciences, National Agriculture and Food Research Organization, Tsukuba, Japan.

View Article

Download full-text PDF

Source
http://www.nature.com/articles/s41477-018-0321-8
Publisher Site
http://dx.doi.org/10.1038/s41477-018-0321-8DOI Listing
January 2019

The Spleen Is an Ideal Site for Inducing Transplanted Islet Graft Expansion in Mice.

PLoS One 2017 30;12(1):e0170899. Epub 2017 Jan 30.

Department of Regenerative Medicine & Transplantation, Faculty of Medicine, Fukuoka University, Fukuoka, Japan.

View Article

Download full-text PDF

Source
http://journals.plos.org/plosone/article?id=10.1371/journal.pone.0170899PLOS
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5279780PMC
August 2017

The Nipponbare genome and the next-generation of rice genomics research in Japan.

Rice (N Y) 2016 Dec 22;9(1):33. Epub 2016 Jul 22.

Nodai Research Institute, Tokyo University of Agriculture, 1-1-1 Sakuragaoka, Setagaya, Tokyo, 156-8502, Japan.

View Article

Download full-text PDF

Source
http://dx.doi.org/10.1186/s12284-016-0107-4DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4958085PMC
December 2016

Progress in Clinical Encapsulated Islet Xenotransplantation.

Transplantation 2016 Nov;100(11):2301-2308

1 Thomas E. Starzl Transplantation Institute, University of Pittsburgh, Pittsburgh, PA. 2 Otsuka Pharmaceutical Factory, Tateiwa, Muya-cho, Naruto Tokushima, Japan. 3 Hospital Eva Peron de San Martin, Buenos Aires, Argentina. 4 Department of Regenerative Medicine and Transplantation, Faculty of Medicine, Fukuoka University, Fukuoka City, Fukuoka, Japan. 5 Laboratory of Surgery and Transplantation, Catholic University of Louvain, Brussels, Belgium. 6 Gene Center, LMU Munich and German Center for Diabetes Research (DZD), Munich, Germany. 7 Transplantation Immunology Unit, Padua University Hospital, and the Consortium for Research in Organ Transplantation (CORIT), Padua, Italy.

View Article

Download full-text PDF

Source
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5077652PMC
http://dx.doi.org/10.1097/TP.0000000000001371DOI Listing
November 2016

Islet-derived damage-associated molecular pattern molecule contributes to immune responses following microencapsulated neonatal porcine islet xenotransplantation in mice.

Xenotransplantation 2016 09 15;23(5):393-404. Epub 2016 Jul 15.

Department of Regenerative Medicine & Transplantation, Faculty of Medicine, Fukuoka University, Fukuoka, Japan.

View Article

Download full-text PDF

Source
http://dx.doi.org/10.1111/xen.12253DOI Listing
September 2016

Pretreatment of donor islets with papain improves allograft survival without systemic immunosuppression in mice.

Islets 2016 09;8(5):145-55

a Department of Regenerative Medicine and Transplantation , Faculty of Medicine, Fukuoka University , Fukuoka , Japan.

View Article

Download full-text PDF

Source
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5029203PMC
http://dx.doi.org/10.1080/19382014.2016.1223579DOI Listing
September 2016

Improvement of barley genome annotations by deciphering the Haruna Nijo genome.

DNA Res 2016 Feb 29;23(1):21-8. Epub 2015 Nov 29.

National Institute of Agrobiological Sciences, Tsukuba 305-8602, Japan.

View Article

Download full-text PDF

Source
http://dx.doi.org/10.1093/dnares/dsv033DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4755524PMC
February 2016

TENOR: Database for Comprehensive mRNA-Seq Experiments in Rice.

Plant Cell Physiol 2016 Jan 16;57(1):e7. Epub 2015 Nov 16.

Agrogenomics Research Center, National Institute of Agrobiological Sciences, 2-1-2 Kannondai, Tsukuba, Ibaraki, 305-8602 Japan

View Article

Download full-text PDF

Source
http://dx.doi.org/10.1093/pcp/pcv179DOI Listing
January 2016

The Vigna Genome Server, 'VigGS': A Genomic Knowledge Base of the Genus Vigna Based on High-Quality, Annotated Genome Sequence of the Azuki Bean, Vigna angularis (Willd.) Ohwi & Ohashi.

Plant Cell Physiol 2016 Jan 7;57(1):e2. Epub 2015 Dec 7.

Genetic Resources Center, National Institute of Agrobiological Sciences, 2-1-2 Kannondai, Tsukuba, Ibaraki, 305-8602 Japan.

View Article

Download full-text PDF

Source
http://dx.doi.org/10.1093/pcp/pcv189DOI Listing
January 2016

Comparison of surface modification chemistries in mouse, porcine, and human islets.

J Biomed Mater Res A 2015 Mar 24;103(3):869-77. Epub 2014 May 24.

Institute of Biomedical Studies, Baylor University, Waco, Texas, 76798-7224.

View Article

Download full-text PDF

Source
http://dx.doi.org/10.1002/jbm.a.35229DOI Listing
March 2015

Four foodborne disease outbreaks caused by a new type of enterotoxin-producing Clostridium perfringens.

J Clin Microbiol 2015 Mar 7;53(3):859-67. Epub 2015 Jan 7.

Department of Microbiology, Tokyo Metropolitan Institute of Public Health, Tokyo, Japan.

View Article

Download full-text PDF

Source
http://jcm.asm.org/lookup/doi/10.1128/JCM.02859-14
Publisher Site
http://dx.doi.org/10.1128/JCM.02859-14DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4390623PMC
March 2015

Discovery of imidazo[1,2-b]pyridazine derivatives: selective and orally available Mps1 (TTK) kinase inhibitors exhibiting remarkable antiproliferative activity.

J Med Chem 2015 Feb 10;58(4):1760-75. Epub 2015 Feb 10.

Medicinal Research Laboratories, ‡Drug Developmental Research Laboratories, and §Innovative Drug Discovery Research Laboratories, Shionogi Pharmaceutical Research Center , 1-1 Futaba-cho 3-chome, Toyonaka, Osaka 561-0825, Japan.

View Article

Download full-text PDF

Source
http://dx.doi.org/10.1021/jm501599uDOI Listing
February 2015

Aquaporin-4 autoimmunity in a child without optic neuritis and myelitis.

Brain Dev 2015 Jan 18;37(1):149-52. Epub 2014 Apr 18.

Department of Pediatrics, Tohoku University School of Medicine, Sendai, Japan.

View Article

Download full-text PDF

Source
http://dx.doi.org/10.1016/j.braindev.2014.03.015DOI Listing
January 2015

HMGB1-Mediated Early Loss of Transplanted Islets Is Prevented by Anti-IL-6R Antibody in Mice.

Pancreas 2015 Jan;44(1):166-71

From the *Department of Regenerative Medicine and Transplantation, Faculty of Medicine, Fukuoka University; and †Murakami Karindo Hospital, Fukuoka, Japan.

View Article

Download full-text PDF

Source
http://dx.doi.org/10.1097/MPA.0000000000000188DOI Listing
January 2015

Whole-genome analysis of herbicide-tolerant mutant rice generated by Agrobacterium-mediated gene targeting.

Plant Cell Physiol 2015 Jan 4;56(1):116-25. Epub 2014 Nov 4.

Agrogenomics Research Center, National Institute of Agrobiological Sciences, 2-1-2 Kannondai, Tsukuba, Ibaraki, 305-8602 Japan Graduate School of Nanobioscience, Yokohama City University, 22-2 Seto, Kanazawa, Yokohama, 236-0027 Japan

View Article

Download full-text PDF

Source
http://dx.doi.org/10.1093/pcp/pcu153DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4301741PMC
January 2015

A novel rice cytochrome P450 gene, CYP72A31, confers tolerance to acetolactate synthase-inhibiting herbicides in rice and Arabidopsis.

Plant Physiol 2014 Nov 9;166(3):1232-40. Epub 2014 Jan 9.

Agrogenomics Research Center, National Institute of Agrobiological Sciences, Tsukuba, Ibaraki 305-8602, Japan (H.S., F.T.-S., A.N.-Y., K.H., T.M., T.T., T.I., M.Y., S.T.);Life Science Research Institute, Kumiai Chemical Industry, Kakegawa, Shizuoka 439-0031, Japan (J.H., K.K., T.S.);Graduate School of Life and Environmental Sciences, Gene Research Center, University of Tsukuba, Tsukuba, Ibaraki 305-8572, Japan (S.N.);Graduate School of Agriculture, Kyoto University, Sakyo-ku, Kyoto 606-8502, Japan (S.I.); andKihara Institute for Biological Research, Yokohama City University, Yokohama, Kanagawa 244-0813, Japan (S.T.)

View Article

Download full-text PDF

Source
http://dx.doi.org/10.1104/pp.113.231266DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4226355PMC
November 2014

Alleviation of instant blood-mediated inflammatory reaction in autologous conditions through treatment of human islets with NF-κB inhibitors.

Transplantation 2014 Sep;98(5):578-84

1 The Institute of Biomedical Studies, Baylor University, Waco, TX. 2 Islet Cell Laboratory, Baylor Research Institute, Dallas, TX. 3 Baylor Annette C. and Harold C. Simmons Transplant Institute, Baylor University Medical Center, Dallas, TX. 4 Address correspondence to: Bashoo Naziruddin, Ph.D., 3410 Worth Street, Suite 950, Dallas, TX 75246.

View Article

Download full-text PDF

Source
http://dx.doi.org/10.1097/TP.0000000000000107DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4206260PMC
September 2014

Improving allogeneic islet transplantation by suppressing Th17 and enhancing Treg with histone deacetylase inhibitors.

Transpl Int 2014 Apr 10;27(4):408-15. Epub 2014 Feb 10.

Baylor Research Institute Fort Worth Campus, Fort Worth, TX, USA; The Departments of Surgery, Tokushima University, Tokushima, Japan.

View Article

Download full-text PDF

Source
http://dx.doi.org/10.1111/tri.12265DOI Listing
April 2014

MEGANTE: a web-based system for integrated plant genome annotation.

Plant Cell Physiol 2014 Jan 18;55(1):e2. Epub 2013 Nov 18.

Agrogenomics Research Center, National Institute of Agrobiological Sciences, 2-1-2 Kannondai, Tsukuba, Ibaraki 305-8602, Japan.

View Article

Download full-text PDF

Source
http://dx.doi.org/10.1093/pcp/pct157DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3894707PMC
January 2014

A whole-genome analysis of a transgenic rice seed-based edible vaccine against cedar pollen allergy.

DNA Res 2013 Dec 15;20(6):623-31. Epub 2013 Aug 15.

1Genetically Modified Organism Research Center, National Institute of Agrobiological Sciences, 2-1-2 Kan-nondai, Tsukuba, Ibaraki 305-8602, Japan.

View Article

Download full-text PDF

Source
http://dx.doi.org/10.1093/dnares/dst036DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3859328PMC
December 2013

bex-db: Bioinformatics workbench for comprehensive analysis of barley-expressed genes.

Breed Sci 2013 Dec 1;63(4):430-4. Epub 2013 Dec 1.

Agrogenomics Research Center, National Institute of Agrobiological Sciences , 2-1-2 Kannondai, Tsukuba, Ibaraki 305-8602 , Japan.

View Article

Download full-text PDF

Source
http://dx.doi.org/10.1270/jsbbs.63.430DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3859355PMC
December 2013

TASUKE: a web-based visualization program for large-scale resequencing data.

Bioinformatics 2013 Jul 7;29(14):1806-8. Epub 2013 Jun 7.

Bioinformatics Research Unit, Agrogenomics Research Center, National Institute of Agrobiological Sciences, Tsukuba, Ibaraki 305-8602, Japan.

View Article

Download full-text PDF

Source
http://dx.doi.org/10.1093/bioinformatics/btt295DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3702261PMC
July 2013

Simultaneous RNA-seq analysis of a mixed transcriptome of rice and blast fungus interaction.

PLoS One 2012 6;7(11):e49423. Epub 2012 Nov 6.

Agrogenomics Research Center, National Institute of Agrobiological Sciences, Tsukuba, Ibaraki, Japan.

View Article

Download full-text PDF

Source
http://journals.plos.org/plosone/article?id=10.1371/journal.pone.0049423PLOS
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3490861PMC
April 2013

Asymmetric distribution of gene expression in the centromeric region of rice chromosome 5.

Front Plant Sci 2011 6;2:16. Epub 2011 Jun 6.

Plant Genome Research Unit, Division of Genome and Biodiversity Research, National Institute of Agrobiological Sciences Tsukuba, Ibaraki, Japan.

View Article

Download full-text PDF

Source
http://dx.doi.org/10.3389/fpls.2011.00016DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3355683PMC
August 2012

Global transcriptome analysis reveals distinct expression among duplicated genes during sorghum-interaction.

BMC Plant Biol 2012 Jul 29;12:121. Epub 2012 Jul 29.

National Institute of Agrobiological Sciences, Agrogenomics Research Center, 1-2, Kannondai 2-chome, Tsukuba, Ibaraki 305-8602, Japan.

View Article

Download full-text PDF

Source
http://dx.doi.org/10.1186/1471-2229-12-121DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3480847PMC
July 2012

Independent domestication of Asian rice followed by gene flow from japonica to indica.

Mol Biol Evol 2012 May 22;29(5):1471-9. Epub 2011 Dec 22.

Agrogenomics Research Center, National Institute of Agrobiological Sciences, Tsukuba, Ibaraki, Japan.

View Article

Download full-text PDF

Source
http://dx.doi.org/10.1093/molbev/msr315DOI Listing
May 2012

Effect of glycosylation on biodistribution of radiolabeled glucagon-like peptide 1.

Ann Nucl Med 2012 Feb 21;26(2):184-91. Epub 2011 Dec 21.

Department of Radiobiology, Graduate School of Medicine, Hokkaido University, Sapporo, Japan.

View Article

Download full-text PDF

Source
http://dx.doi.org/10.1007/s12149-011-0558-zDOI Listing
February 2012

Large human islets secrete less insulin per islet equivalent than smaller islets in vitro.

Islets 2011 Jan-Feb;3(1):1-5. Epub 2011 Jan 1.

Baylor All Saints Islet Cell Laboratory, Baylor Research Institute Fort Worth Campus, Fort Worth, TX, USA.

View Article

Download full-text PDF

Source
http://dx.doi.org/10.4161/isl.3.1.14131DOI Listing
June 2011

Gene tree discordance of wild and cultivated Asian rice deciphered by genome-wide sequence comparison.

Gene 2011 May 28;477(1-2):53-60. Epub 2011 Jan 28.

Department of Integrated Biosciences, Graduate School of Frontier Sciences, The University of Tokyo, Kashiwa 277-8561, Japan.

View Article

Download full-text PDF

Source
http://dx.doi.org/10.1016/j.gene.2011.01.013DOI Listing
May 2011

Assessment of islet quality following international shipping of more than 10,000 km.

Cell Transplant 2010 3;19(6):731-41. Epub 2010 Jun 3.

Baylor Institute for Immunology Research, Baylor Research Institute, Dallas, TX, USA.

View Article

Download full-text PDF

Source
http://dx.doi.org/10.3727/096368910X508834DOI Listing
January 2011

Massive parallel sequencing of mRNA in identification of unannotated salinity stress-inducible transcripts in rice (Oryza sativa L.).

BMC Genomics 2010 Dec 2;11:683. Epub 2010 Dec 2.

National Institute of Agrobiological Sciences (NIAS), Division of Genome and Biodiversity Research, 1-2 Kannondai 2-chome, Tsukuba, Ibaraki 305-8602, Japan.

View Article

Download full-text PDF

Source
http://dx.doi.org/10.1186/1471-2164-11-683DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3016417PMC
December 2010

Efficient plant gene identification based on interspecies mapping of full-length cDNAs.

DNA Res 2010 Oct 28;17(5):271-9. Epub 2010 Jul 28.

Bioinformatics Research Unit, Division of Genome and Biodiversity Research, National Institute of Agrobiological Sciences, 2-1-2 Kannondai, Tsukuba, Ibaraki 305-8602, Japan.

View Article

Download full-text PDF

Source
http://dx.doi.org/10.1093/dnares/dsq017DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2955710PMC
October 2010

One hundred human pancreatic islet isolations at Baylor Research Institute.

Proc (Bayl Univ Med Cent) 2010 Oct;23(4):341-8

Baylor Research Institute, Fort Worth Campus, Fort Worth, Texas (Takita, Matsumoto, Noguchi, Sugimoto, Itoh); the Department of Internal Medicine (Shimoda), Department of Surgery (Lamont), and Division of Gastroenterology (Lara), Baylor University Medical Center at Dallas; Baylor Institute for Immunology Research, Dallas, Texas (Chujo); and Baylor Regional Transplant Institute, Dallas, Texas (Onaca, Naziruddin, Klintmalm, Levy).

View Article

Download full-text PDF

Source
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2943445PMC
http://dx.doi.org/10.1080/08998280.2010.11928648DOI Listing
October 2010

Variables associated with islet yield in autologous islet cell transplantation for chronic pancreatitis.

Proc (Bayl Univ Med Cent) 2010 Apr;23(2):115-20

Baylor Research Institute, Fort Worth Campus, Fort Worth, Texas (Takita, Matsumoto, Noguchi, Itoh, Sugimoto); Baylor Regional Transplant Institute, Dallas, Texas (Naziruddin, Onaca, Levy); Department of Internal Medicine (Shimoda), Department of Surgery (Lamont), and Division of Gastroenterology (Lara), Baylor University Medical Center, Dallas, Texas; and Baylor Institute for Immunology Research, Dallas, Texas (Chujo).

View Article

Download full-text PDF

Source
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2848085PMC
http://dx.doi.org/10.1080/08998280.2010.11928597DOI Listing
April 2010

Massive gene losses in Asian cultivated rice unveiled by comparative genome analysis.

BMC Genomics 2010 Feb 19;11:121. Epub 2010 Feb 19.

Division of Genome and Biodiversity Research, National Institute of Agrobiological Sciences, Tsukuba, Ibaraki 305-8602, Japan.

View Article

Download full-text PDF

Source
http://dx.doi.org/10.1186/1471-2164-11-121DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2831846PMC
February 2010

SALAD database: a motif-based database of protein annotations for plant comparative genomics.

Nucleic Acids Res 2010 Jan 23;38(Database issue):D835-42. Epub 2009 Oct 23.

Plant Genomics Research Unit and Bioinformatics Research Unit, National Institute of Agrobiological Sciences, 2-1-2 Kannondai, Tsukuba 305-8602, Japan.

View Article

Download full-text PDF

Source
http://dx.doi.org/10.1093/nar/gkp831DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2808985PMC
January 2010

G-compass: a web-based comparative genome browser between human and other vertebrate genomes.

Bioinformatics 2009 Dec 21;25(24):3321-2. Epub 2009 Oct 21.

Japan Biological Information Research Center, Japan Biological Informatics Consortium, Aomi 2-42, Koto-ku, Tokyo 135-0064, Japan.

View Article

Download full-text PDF

Source
http://dx.doi.org/10.1093/bioinformatics/btp594DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2788932PMC
December 2009

Prevention of early loss of transplanted islets in the liver of mice by adenosine.

Transplantation 2009 Jul;88(1):49-56

Department of Regenerative Medicine and Transplantation, Faculty of Medicine Fukuoka University, Fukuoka, Japan.

View Article

Download full-text PDF

Source
http://dx.doi.org/10.1097/TP.0b013e3181aa6c9bDOI Listing
July 2009

Highly diversified molecular evolution of downstream transcription start sites in rice and Arabidopsis.

Plant Physiol 2009 Mar 31;149(3):1316-24. Epub 2008 Dec 31.

Division of Genome and Biodiversity Research, National Institute of Agrobiological Sciences, Tsukuba, Ibaraki 305-8602, Japan.

View Article

Download full-text PDF

Source
http://dx.doi.org/10.1104/pp.108.131656DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2649393PMC
March 2009

Genome-wide validation of Magnaporthe grisea gene structures based on transcription evidence.

FEBS Lett 2009 Feb 30;583(4):797-800. Epub 2009 Jan 30.

National Institute of Agrobiological Sciences, 2-1-2 Kannondai, Tsukuba, Ibaraki 305-8602, Japan.

View Article

Download full-text PDF

Source
http://dx.doi.org/10.1016/j.febslet.2009.01.041DOI Listing
February 2009

In silico identification of short nucleotide sequences associated with gene expression of pollen development in rice.

Plant Cell Physiol 2008 Oct 3;49(10):1451-64. Epub 2008 Oct 3.

Plant Genomics Research Unit, National Institute of Agrobiological Sciences, 2-1-2 Kannondai, Tsukuba, 305-8602 Japan.

View Article

Download full-text PDF

Source
http://dx.doi.org/10.1093/pcp/pcn129DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2566928PMC
October 2008

The H-Invitational Database (H-InvDB), a comprehensive annotation resource for human genes and transcripts.

Authors:
Chisato Yamasaki Katsuhiko Murakami Yasuyuki Fujii Yoshiharu Sato Erimi Harada Jun-ichi Takeda Takayuki Taniya Ryuichi Sakate Shingo Kikugawa Makoto Shimada Motohiko Tanino Kanako O Koyanagi Roberto A Barrero Craig Gough Hong-Woo Chun Takuya Habara Hideki Hanaoka Yosuke Hayakawa Phillip B Hilton Yayoi Kaneko Masako Kanno Yoshihiro Kawahara Toshiyuki Kawamura Akihiro Matsuya Naoki Nagata Kensaku Nishikata Akiko Ogura Noda Shin Nurimoto Naomi Saichi Hiroaki Sakai Ryoko Sanbonmatsu Rie Shiba Mami Suzuki Kazuhiko Takabayashi Aiko Takahashi Takuro Tamura Masayuki Tanaka Susumu Tanaka Fusano Todokoro Kaori Yamaguchi Naoyuki Yamamoto Toshihisa Okido Jun Mashima Aki Hashizume Lihua Jin Kyung-Bum Lee Yi-Chueh Lin Asami Nozaki Katsunaga Sakai Masahito Tada Satoru Miyazaki Takashi Makino Hajime Ohyanagi Naoki Osato Nobuhiko Tanaka Yoshiyuki Suzuki Kazuho Ikeo Naruya Saitou Hideaki Sugawara Claire O'Donovan Tamara Kulikova Eleanor Whitfield Brian Halligan Mary Shimoyama Simon Twigger Kei Yura Kouichi Kimura Tomohiro Yasuda Tetsuo Nishikawa Yutaka Akiyama Chie Motono Yuri Mukai Hideki Nagasaki Makiko Suwa Paul Horton Reiko Kikuno Osamu Ohara Doron Lancet Eric Eveno Esther Graudens Sandrine Imbeaud Marie Anne Debily Yoshihide Hayashizaki Clara Amid Michael Han Andreas Osanger Toshinori Endo Michael A Thomas Mika Hirakawa Wojciech Makalowski Mitsuteru Nakao Nam-Soon Kim Hyang-Sook Yoo Sandro J De Souza Maria de Fatima Bonaldo Yoshihito Niimura Vladimir Kuryshev Ingo Schupp Stefan Wiemann Matthew Bellgard Masafumi Shionyu Libin Jia Danielle Thierry-Mieg Jean Thierry-Mieg Lukas Wagner Qinghua Zhang Mitiko Go Shinsei Minoshima Masafumi Ohtsubo Kousuke Hanada Peter Tonellato Takao Isogai Ji Zhang Boris Lenhard Sangsoo Kim Zhu Chen Ursula Hinz Anne Estreicher Kenta Nakai Izabela Makalowska Winston Hide Nicola Tiffin Laurens Wilming Ranajit Chakraborty Marcelo Bento Soares Maria Luisa Chiusano Yutaka Suzuki Charles Auffray Yumi Yamaguchi-Kabata Takeshi Itoh Teruyoshi Hishiki Satoshi Fukuchi Ken Nishikawa Sumio Sugano Nobuo Nomura Yoshio Tateno Tadashi Imanishi Takashi Gojobori

Nucleic Acids Res 2008 Jan 18;36(Database issue):D793-9. Epub 2007 Dec 18.

Japan Biological Information Research Center, Japan Biological Informatics Consortium, Japan.

View Article

Download full-text PDF

Source
http://dx.doi.org/10.1093/nar/gkm999DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2238988PMC
January 2008

The Rice Annotation Project Database (RAP-DB): 2008 update.

Nucleic Acids Res 2008 Jan 17;36(Database issue):D1028-33. Epub 2007 Dec 17.

National Institute of Agrobiological Sciences, Ibaraki 305-8602, Japan.

View Article

Download full-text PDF

Source
http://dx.doi.org/10.1093/nar/gkm978DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2238920PMC
January 2008

Birth and death of genes promoted by transposable elements in Oryza sativa.

Gene 2007 May 23;392(1-2):59-63. Epub 2006 Nov 23.

Division of Genome and Biodiversity Research, National Institute of Agrobiological Sciences, 2-1-2 Kannondai, Tsukuba, Ibaraki 305-8602, Japan.

View Article

Download full-text PDF

Source
http://dx.doi.org/10.1016/j.gene.2006.11.010DOI Listing
May 2007

Frequent emergence and functional resurrection of processed pseudogenes in the human and mouse genomes.

Gene 2007 Mar 18;389(2):196-203. Epub 2006 Nov 18.

Japan Biological Information Research Center, Japan Biological Informatics Consortium, AIST Bio-IT Research Bldg 7F, 2-42 Aomi, Tokyo, Japan.

View Article

Download full-text PDF

Source
http://dx.doi.org/10.1016/j.gene.2006.11.007DOI Listing
March 2007

Curated genome annotation of Oryza sativa ssp. japonica and comparative genome analysis with Arabidopsis thaliana.

Genome Res 2007 Feb 8;17(2):175-83. Epub 2007 Jan 8.

Division of Genome and Biodiversity Research, National Institute of Agrobiological Sciences, Tsukuba, Ibaraki 305-8602, Japan.

View Article

Download full-text PDF

Source
http://dx.doi.org/10.1101/gr.5509507DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC1781349PMC
February 2007

Rate and polarity of gene fusion and fission in Oryza sativa and Arabidopsis thaliana.

Mol Biol Evol 2007 Jan 11;24(1):110-21. Epub 2006 Oct 11.

Division of Bioengineering and Bioinformatics, Graduate School of Information Science and Technology, Hokkaido University, Kita-ku, Sapporo, Japan.

View Article

Download full-text PDF

Source
http://dx.doi.org/10.1093/molbev/msl138DOI Listing
January 2007

A crucial role for matrix metalloproteinase 2 in osteocytic canalicular formation and bone metabolism.

J Biol Chem 2006 Nov 7;281(44):33814-24. Epub 2006 Sep 7.

Laboratory for Behavioral Genetics, RIKEN Brain Science Institute, Wako, Saitama 351-0198, Japan.

View Article

Download full-text PDF

Source
http://dx.doi.org/10.1074/jbc.M607290200DOI Listing
November 2006

Alternative splicing in human transcriptome: functional and structural influence on proteins.

Gene 2006 Oct 2;380(2):63-71. Epub 2006 Jun 2.

Quantum Bioinformatics Team, Center for Computational Science and Engineering, Japan Atomic Energy Agency, 8-1 Umemidai, Kizu-cho, Souraku-gun, Kyoto 619-0215, Japan.

View Article

Download full-text PDF

Source
http://dx.doi.org/10.1016/j.gene.2006.05.015DOI Listing
October 2006

Glycoproteomic probes for fluorescent imaging of fucosylated glycans in vivo.

Proc Natl Acad Sci U S A 2006 Aug 8;103(33):12371-6. Epub 2006 Aug 8.

Department of Chemistry and The Skaggs Institute for Chemical Biology and Department of Molecular and Experimental Medicine, The Scripps Research Institute, 10550 North Torrey Pines Road, La Jolla, CA 92037, USA.

View Article

Download full-text PDF

Source
http://daais.sinica.edu.tw/download/publication_list/en/90.p
Web Search
http://www.pnas.org/cgi/doi/10.1073/pnas.0605418103
Publisher Site
http://dx.doi.org/10.1073/pnas.0605418103DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC1567886PMC
August 2006

TACT: Transcriptome Auto-annotation Conducting Tool of H-InvDB.

Nucleic Acids Res 2006 Jul;34(Web Server issue):W345-9

Integrated Database Group, Japan Biological Information Research Center, Japan Biological Informatics Consortium, AIST Waterfront Bio-IT Research Building, 2-42 Aomi, Koto-ku, Tokyo 135-0064, Japan.

View Article

Download full-text PDF

Source
http://dx.doi.org/10.1093/nar/gkl283DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC1538819PMC
July 2006

The Rice Annotation Project Database (RAP-DB): hub for Oryza sativa ssp. japonica genome information.

Nucleic Acids Res 2006 Jan;34(Database issue):D741-4

Center for Information Biology and DNA Data Bank of Japan, National Institute of Genetics, Research Organization of Information and Systems, 1111 Yata, Mishima, Shizuoka 411-8540, Japan.

View Article

Download full-text PDF

Source
http://dx.doi.org/10.1093/nar/gkj094DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC1347456PMC
January 2006