Takatomo Fujisawa

Takatomo Fujisawa

UNVERIFIED PROFILE

Are you Takatomo Fujisawa?   Register this Author

Register author
Takatomo Fujisawa

Takatomo Fujisawa

Publications by authors named "Takatomo Fujisawa"

Are you Takatomo Fujisawa?   Register this Author

36Publications

1275Reads

44Profile Views

DDBJ Database updates and computational infrastructure enhancement.

Nucleic Acids Res 2020 Jan;48(D1):D45-D50

The Bioinformation and DDBJ Center, National Institute of Genetics, Mishima, Shizuoka, 411-8540, Japan.

View Article

Download full-text PDF

Source
http://dx.doi.org/10.1093/nar/gkz982DOI Listing
January 2020

Generating Publication-Ready Prokaryotic Genome Annotations with DFAST.

Methods Mol Biol 2019 ;1962:215-226

Department of Informatics, National Institute of Genetics, Shizuoka, Japan.

View Article

Download full-text PDF

Source
http://link.springer.com/10.1007/978-1-4939-9173-0_13
Publisher Site
http://dx.doi.org/10.1007/978-1-4939-9173-0_13DOI Listing
August 2019

DFAST: a flexible prokaryotic genome annotation pipeline for faster genome publication.

Bioinformatics 2018 03;34(6):1037-1039

Center for Information Biology, National Institute of Genetics, Research Organization of Information and Systems, 1111 Yata, Mishima 411-8540, Japan.

View Article

Download full-text PDF

Source
http://dx.doi.org/10.1093/bioinformatics/btx713DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5860143PMC
March 2018

Complete Genome Sequence of a Coastal Cyanobacterium, sp. Strain NIES-970.

Genome Announc 2017 Apr 6;5(14). Epub 2017 Apr 6.

Center for Environmental Biology and Ecosystem Studies, National Institute for Environmental Studies, Tsukuba, Ibaraki, Japan.

View Article

Download full-text PDF

Source
http://dx.doi.org/10.1128/genomeA.00139-17DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5383900PMC
April 2017

CyanoBase: a large-scale update on its 20th anniversary.

Nucleic Acids Res 2017 01 29;45(D1):D551-D554. Epub 2016 Nov 29.

Center for Information Biology, National Institute of Genetics, Research Organization of Information and Systems, Yata, Mishima 411-8540, Japan

View Article

Download full-text PDF

Source
http://dx.doi.org/10.1093/nar/gkw1131DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5210588PMC
January 2017

DNA Data Bank of Japan.

Nucleic Acids Res 2017 01 24;45(D1):D25-D31. Epub 2016 Oct 24.

DDBJ Center, National Institute of Genetics, Shizuoka 411-8540, Japan

View Article

Download full-text PDF

Source
http://dx.doi.org/10.1093/nar/gkw1001DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5210514PMC
January 2017

Genome sequence and overview of Shr3 in the eighth class of the phylum .

Stand Genomic Sci 2016 13;11:90. Epub 2016 Dec 13.

Genetic Strains Research Center, National Institute of Genetics, 1111 Yata, Mishima, 411-8540 Japan ; Department of Genetics, The Graduate University for Advanced Studies (SOKENDAI), 1111 Yata, Mishima, 411-8540 Japan.

View Article

Download full-text PDF

Source
http://standardsingenomics.biomedcentral.com/articles/10.118
Publisher Site
http://dx.doi.org/10.1186/s40793-016-0210-6DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5154148PMC
December 2016

DFAST and DAGA: web-based integrated genome annotation tools and resources.

Biosci Microbiota Food Health 2016 14;35(4):173-184. Epub 2016 Jul 14.

Center for Information Biology, National Institute of Genetics, 1111 Yata, Mishima, Shizuoka 411-8540, Japan; RIKEN Center for Sustainable Resource Science, 1-7-22 Suehiro-cho, Tsurumi, Yokohama, Kanagawa 230-0045, Japan.

View Article

Download full-text PDF

Source
http://dx.doi.org/10.12938/bmfh.16-003DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5107635PMC
July 2016

Complete Genome Sequence of Aurantimicrobium minutum Type Strain KNCT, a Planktonic Ultramicrobacterium Isolated from River Water.

Genome Announc 2016 Jun 30;4(3). Epub 2016 Jun 30.

Genetic Strains Research Center, National Institute of Genetics, Mishima, Japan The Graduate University for Advanced Studies (SOKENDAI), Mishima, Japan.

View Article

Download full-text PDF

Source
http://genomea.asm.org/lookup/doi/10.1128/genomeA.00616-16
Publisher Site
http://dx.doi.org/10.1128/genomeA.00616-16DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4929513PMC
June 2016

Complete genome sequence of cyanobacterium Fischerella sp. NIES-3754, providing thermoresistant optogenetic tools.

J Biotechnol 2016 Feb 16;220:45-6. Epub 2016 Jan 16.

Genome Research Center, Tokyo University of Agriculture, 1-1-1 Sakuragaoka, Setagaya-ku, Tokyo 156-8502, Japan. Electronic address:

View Article

Download full-text PDF

Source
http://dx.doi.org/10.1016/j.jbiotec.2016.01.011DOI Listing
February 2016

DNA data bank of Japan (DDBJ) progress report.

Nucleic Acids Res 2016 Jan 17;44(D1):D51-7. Epub 2015 Nov 17.

DDBJ Center, National Institute of Genetics, Shizuoka 411-8540, Japan National Bioscience Database Center, Japan Science and Technology Agency, Tokyo 102-8666, Japan

View Article

Download full-text PDF

Source
http://dx.doi.org/10.1093/nar/gkv1105DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4702806PMC
January 2016

Complete genome sequence of cyanobacterium Nostoc sp. NIES-3756, a potentially useful strain for phytochrome-based bioengineering.

J Biotechnol 2016 Jan 4;218:51-2. Epub 2015 Dec 4.

Genome Research Center, Tokyo University of Agriculture, 1-1-1 Sakuragaoka, Setagaya-ku, Tokyo 156-8502, Japan. Electronic address:

View Article

Download full-text PDF

Source
http://dx.doi.org/10.1016/j.jbiotec.2015.12.002DOI Listing
January 2016

The BioMart community portal: an innovative alternative to large, centralized data repositories.

Authors:
Damian Smedley Syed Haider Steffen Durinck Luca Pandini Paolo Provero James Allen Olivier Arnaiz Mohammad Hamza Awedh Richard Baldock Giulia Barbiera Philippe Bardou Tim Beck Andrew Blake Merideth Bonierbale Anthony J Brookes Gabriele Bucci Iwan Buetti Sarah Burge Cédric Cabau Joseph W Carlson Claude Chelala Charalambos Chrysostomou Davide Cittaro Olivier Collin Raul Cordova Rosalind J Cutts Erik Dassi Alex Di Genova Anis Djari Anthony Esposito Heather Estrella Eduardo Eyras Julio Fernandez-Banet Simon Forbes Robert C Free Takatomo Fujisawa Emanuela Gadaleta Jose M Garcia-Manteiga David Goodstein Kristian Gray José Afonso Guerra-Assunção Bernard Haggarty Dong-Jin Han Byung Woo Han Todd Harris Jayson Harshbarger Robert K Hastings Richard D Hayes Claire Hoede Shen Hu Zhi-Liang Hu Lucie Hutchins Zhengyan Kan Hideya Kawaji Aminah Keliet Arnaud Kerhornou Sunghoon Kim Rhoda Kinsella Christophe Klopp Lei Kong Daniel Lawson Dejan Lazarevic Ji-Hyun Lee Thomas Letellier Chuan-Yun Li Pietro Lio Chu-Jun Liu Jie Luo Alejandro Maass Jerome Mariette Thomas Maurel Stefania Merella Azza Mostafa Mohamed Francois Moreews Ibounyamine Nabihoudine Nelson Ndegwa Céline Noirot Cristian Perez-Llamas Michael Primig Alessandro Quattrone Hadi Quesneville Davide Rambaldi James Reecy Michela Riba Steven Rosanoff Amna Ali Saddiq Elisa Salas Olivier Sallou Rebecca Shepherd Reinhard Simon Linda Sperling William Spooner Daniel M Staines Delphine Steinbach Kevin Stone Elia Stupka Jon W Teague Abu Z Dayem Ullah Jun Wang Doreen Ware Marie Wong-Erasmus Ken Youens-Clark Amonida Zadissa Shi-Jian Zhang Arek Kasprzyk

Nucleic Acids Res 2015 Jul 20;43(W1):W589-98. Epub 2015 Apr 20.

Center for Translational Genomics and Bioinformatics San Raffaele Scientific Institute, Via Olgettina 58, 20132 Milan, Italy Department of Biological Sciences, Faculty of Science, King Abdulaziz University, Jeddah, Saudi Arabia

View Article

Download full-text PDF

Source
http://dx.doi.org/10.1093/nar/gkv350DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4489294PMC
July 2015

Implementation of linked data in the life sciences at BioHackathon 2011.

J Biomed Semantics 2015 7;6. Epub 2015 Jan 7.

Department of Bioclinical informatics, Tohoku Medical Megabank Organization, Tohoku University, Seiryo-cho 4-1, Aoba-ku, Sendai-shi Miyagi, 980-8575 Japan.

View Article

Download full-text PDF

Source
http://dx.doi.org/10.1186/2041-1480-6-3DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4429360PMC
May 2015

Loss of cytochrome cM stimulates cyanobacterial heterotrophic growth in the dark.

Plant Cell Physiol 2015 Feb 20;56(2):334-45. Epub 2014 Nov 20.

Graduate School of Bioagricultural Sciences, Nagoya University, Nagoya, 464-8601 Japan

View Article

Download full-text PDF

Source
http://dx.doi.org/10.1093/pcp/pcu165DOI Listing
February 2015

The DDBJ Japanese Genotype-phenotype Archive for genetic and phenotypic human data.

Nucleic Acids Res 2015 Jan 3;43(Database issue):D18-22. Epub 2014 Dec 3.

DDBJ Center, National Institute of Genetics, Shizuoka 411-8540, Japan

View Article

Download full-text PDF

Source
http://dx.doi.org/10.1093/nar/gku1120DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4383935PMC
January 2015

Draft Genome Sequence of Lactobacillus oryzae Strain SG293T.

Genome Announc 2014 Aug 28;2(4). Epub 2014 Aug 28.

National Agriculture and Food Research Organization, National Institute of Livestock and Grassland Science, Nasushiobara, Japan

View Article

Download full-text PDF

Source
http://dx.doi.org/10.1128/genomeA.00861-14DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4148733PMC
August 2014

Draft Genome Sequence of Weissella oryzae SG25T, Isolated from Fermented Rice Grains.

Genome Announc 2014 Jul 10;2(4). Epub 2014 Jul 10.

National Agriculture and Food Research Organization, National Institute of Livestock and Grassland Science, Nasushiobara, Japan

View Article

Download full-text PDF

Source
http://dx.doi.org/10.1128/genomeA.00667-14DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4110764PMC
July 2014

Klebsormidium flaccidum genome reveals primary factors for plant terrestrial adaptation.

Nat Commun 2014 May 28;5:3978. Epub 2014 May 28.

1] Center for Biological Resources and Informatics, Tokyo Institute of Technology, Yokohama City, Kanagawa 226-8501, Japan [2] CREST, Japan Science and Technology Agency, Yokohama City, Kanagawa 226-8501, Japan [3] Earth-Life Science Institute, Tokyo Institute of Technology, 2-12-1 Ookayama, Meguro-ku, Tokyo 152-8551, Japan [4] Department of Biological Sciences, Tokyo Institute of Technology, Yokohama City, Kanagawa 226-8501, Japan.

View Article

Download full-text PDF

Source
http://dx.doi.org/10.1038/ncomms4978DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4052687PMC
May 2014

BioHackathon series in 2011 and 2012: penetration of ontology and linked data in life science domains.

J Biomed Semantics 2014 Feb 5;5(1). Epub 2014 Feb 5.

Database Center for Life Science, Research Organization of Information and Systems, 2-11-16, Yayoi, Bunkyo-ku, Tokyo 113-0032, Japan.

View Article

Download full-text PDF

Source
http://dx.doi.org/10.1186/2041-1480-5-5DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3978116PMC
February 2014

DDBJ progress report: a new submission system for leading to a correct annotation.

Nucleic Acids Res 2014 Jan 4;42(Database issue):D44-9. Epub 2013 Nov 4.

DDBJ Center, National Institute of Genetics, Yata 1111, Mishima, Shizuoka 411-8540, Japan and National Bioscience Database Center, Japan Science and Technology Agency, Tokyo 102-8666, Japan.

View Article

Download full-text PDF

Source
http://dx.doi.org/10.1093/nar/gkt1066DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3964987PMC
January 2014

CyanoBase and RhizoBase: databases of manually curated annotations for cyanobacterial and rhizobial genomes.

Nucleic Acids Res 2014 Jan 25;42(Database issue):D666-70. Epub 2013 Nov 25.

Center for Information Biology, National Institute of Genetics, Research Organization of Information and Systems, Yata, Mishima 411-8540, Japan, Database Center for Life Science, Research Organization of Information and Systems, 2-11-16 Yayoi, Bunkyo-ku, Tokyo 113-0032, Japan, Faculty of Life Sciences, Kyoto Sangyo University, Motoyama, Kamigamo, Kita-Ku, Kyoto 603-8555, Japan and Kazusa DNA Research Institute, 2-6-7 Kazusa-Kamatari, Kisarazu 292-0818, Japan.

View Article

Download full-text PDF

Source
http://dx.doi.org/10.1093/nar/gkt1145DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3965071PMC
January 2014

H2DB: a heritability database across multiple species by annotating trait-associated genomic loci.

Nucleic Acids Res 2013 Jan 27;41(Database issue):D880-4. Epub 2012 Nov 27.

Genome Informatics Laboratory, National Institute of Genetics, 1111 Yata, Mishima 411-8540, Japan.

View Article

Download full-text PDF

Source
http://dx.doi.org/10.1093/nar/gks1216DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3531069PMC
January 2013

CyanoBase: the cyanobacteria genome database update 2010.

Nucleic Acids Res 2010 Jan 30;38(Database issue):D379-81. Epub 2009 Oct 30.

Kazusa DNA Research Institute, 2-6-7 Kazusa-Kamatari, Kisarazu, Chiba 292-0812, Japan.

View Article

Download full-text PDF

Source
http://dx.doi.org/10.1093/nar/gkp915DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2808859PMC
January 2010

Complete genome sequence of the soil actinomycete Kocuria rhizophila.

J Bacteriol 2008 Jun 11;190(12):4139-46. Epub 2008 Apr 11.

NITE Genome Analysis Center, Department of Biotechnology, National Institute of Technology and Evaluation, 2-10-49 Nishihara, Shibuya-ku, Tokyo 151-0066, Japan.

View Article

Download full-text PDF

Source
http://dx.doi.org/10.1128/JB.01853-07DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2446769PMC
June 2008

Sequence analysis of three plasmids harboured in Rhodococcus erythropolis strain PR4.

Environ Microbiol 2006 Feb;8(2):334-46

NITE Genome Analysis Center, Department of Biotechnology, National Institute of Technology and Evaluation (NITE), Shibuya-ku, Tokyo, Japan.

View Article

Download full-text PDF

Source
http://dx.doi.org/10.1111/j.1462-2920.2005.00899.xDOI Listing
February 2006