Tadashi Imanishi

Tadashi Imanishi

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Tadashi Imanishi

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Human short tandem repeat identification using a nanopore-based DNA sequencer: a pilot study.

J Hum Genet 2020 Jan 24;65(1):21-24. Epub 2019 Oct 24.

Biomedical Informatics Laboratory, Department of Molecular Life Science, Tokai University School of Medicine, Shimokasuya 143, Isehara, Kanagawa, 259-1193, Japan.

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http://dx.doi.org/10.1038/s10038-019-0688-zDOI Listing
January 2020

Identification of a distinct lineage of aviadenovirus from crane feces.

Virus Genes 2019 Dec 23;55(6):815-824. Epub 2019 Sep 23.

Laboratory of RNA Viruses, Department of Virus Research, Institute for Frontier Life and Medical Sciences, Kyoto, Japan.

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http://dx.doi.org/10.1007/s11262-019-01703-wDOI Listing
December 2019

Molecular characterization of feline paramyxovirus in Japanese cat populations.

Arch Virol 2019 Dec 10. Epub 2019 Dec 10.

Research and Education Center for Prevention of Global Infectious Diseases of Animals, Tokyo University of Agriculture and Technology, Fuchu, Japan.

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http://dx.doi.org/10.1007/s00705-019-04480-xDOI Listing
December 2019

Nucleotide Archival Format (NAF) enables efficient lossless reference-free compression of DNA sequences.

Bioinformatics 2019 Oct;35(19):3826-3828

Department of Molecular Life Science, Tokai University School of Medicine, Isehara, Japan.

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http://dx.doi.org/10.1093/bioinformatics/btz144DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6761962PMC
October 2019

Systematic survey of non-retroviral virus-like elements in eukaryotic genomes.

Virus Res 2019 03 6;262:30-36. Epub 2018 Feb 6.

Department of Molecular Life Science, Tokai University School of Medicine, 143 Shimokasuya, Isehara, Kanagawa 259-1193, Japan; Micro/Nano Technology Center, Tokai University, 411 Kitakaname, Hiratsuka, Kanagawa 259-1292, Japan. Electronic address:

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http://dx.doi.org/10.1016/j.virusres.2018.02.002DOI Listing
March 2019

Rapid bacterial identification by direct PCR amplification of 16S rRNA genes using the MinION™ nanopore sequencer.

FEBS Open Bio 2019 03 29;9(3):548-557. Epub 2019 Jan 29.

Department of Human Stress Response Science Institute of Biomedical Science Kansai Medical University Hirakata Japan.

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http://dx.doi.org/10.1002/2211-5463.12590DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6396348PMC
March 2019

Nanopore-based single molecule sequencing of the D4Z4 array responsible for facioscapulohumeral muscular dystrophy.

Sci Rep 2017 11 1;7(1):14789. Epub 2017 Nov 1.

Department of Applied Biochemistry, School of Engineering, Tokai University, Hiratsuka, Kanagawa, 259-1292, Japan.

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http://dx.doi.org/10.1038/s41598-017-13712-6DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5665936PMC
November 2017

Cbfβ2 deficiency preserves Langerhans cell precursors by lack of selective TGFβ receptor signaling.

J Exp Med 2017 Oct 16;214(10):2933-2946. Epub 2017 Aug 16.

Laboratory for Transcriptional Regulation, RIKEN Center for Integrative Medical Sciences, Yokohama, Japan

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http://www.jem.org/lookup/doi/10.1084/jem.20170729
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http://dx.doi.org/10.1084/jem.20170729DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5626404PMC
October 2017

The efficacy and further functional advantages of random-base molecular barcodes for absolute and digital quantification of nucleic acid molecules.

Sci Rep 2017 10 19;7(1):13576. Epub 2017 Oct 19.

Laboratory for Integrative Omics, RIKEN Quantitative Biology Center (QBiC), 6-2-3 Furuedai Suita, Osaka, 565-0874, Japan.

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http://dx.doi.org/10.1038/s41598-017-13529-3DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5648891PMC
October 2017

Human Contamination in Public Genome Assemblies.

PLoS One 2016 9;11(9):e0162424. Epub 2016 Sep 9.

Department of Molecular Life Science, School of Medicine, Tokai University, Isehara, Kanagawa, Japan.

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http://journals.plos.org/plosone/article?id=10.1371/journal.pone.0162424PLOS
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5017631PMC
August 2017

Empyema associated with Campylobacter curvus infection.

Respirol Case Rep 2017 07 13;5(4):e00234. Epub 2017 Apr 13.

Division of Pulmonary Medicine, Department of Medicine Tokai University School of Medicine Kanagawa Japan.

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http://dx.doi.org/10.1002/rcr2.234DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5391372PMC
July 2017

A portable system for rapid bacterial composition analysis using a nanopore-based sequencer and laptop computer.

Sci Rep 2017 07 18;7(1):5657. Epub 2017 Jul 18.

Biomedical Informatics Laboratory, Department of Molecular Life Science, Tokai University School of Medicine, Isehara, Kanagawa, 259-1193, Japan.

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http://dx.doi.org/10.1038/s41598-017-05772-5DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5516037PMC
July 2017

Selection pressure on human STR loci and its relevance in repeat expansion disease.

Mol Genet Genomics 2016 Oct 11;291(5):1851-69. Epub 2016 Jun 11.

National Institute of Advanced Industrial Science and Technology, 2-3-26 Aomi Koto-ku, Tokyo, 135-0064, Japan.

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http://dx.doi.org/10.1007/s00438-016-1219-7DOI Listing
October 2016

Association between insulin resistance and plasma amino acid profile in non-diabetic Japanese subjects.

J Diabetes Investig 2015 Jul 21;6(4):408-15. Epub 2015 Apr 21.

Tokai University Tokyo Hospital Tokyo, Japan ; Life Care Center, Graduate School of Medicine, Tokai University Tokyo, Japan.

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http://dx.doi.org/10.1111/jdi.12323DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4511300PMC
July 2015

VaDE: a manually curated database of reproducible associations between various traits and human genomic polymorphisms.

Nucleic Acids Res 2015 Jan 31;43(Database issue):D868-72. Epub 2014 Oct 31.

Department of Molecular Life Science, Tokai University School of Medicine, Isehara, Kanagawa 259-1193, Japan Data Management and Integration Team, Molecular Profiling Research Center for Drug Discovery, National Institute of Advanced Industrial Science and Technology, Koto-ku, Tokyo 135-0064, Japan

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http://dx.doi.org/10.1093/nar/gku1037DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4383886PMC
January 2015

RAvariome: a genetic risk variants database for rheumatoid arthritis based on assessment of reproducibility between or within human populations.

Database (Oxford) 2013 23;2013:bat073. Epub 2013 Oct 23.

Department of Molecular Life Science, Division of Basic Medical Science and Molecular Medicine, Tokai University School of Medicine, 143 Shimokasuya, Isehara, Kanagawa 259-1193, Japan and Data Management and Integration Team, Molecular Profiling Research Center for Drug Discovery, National Institute of Advanced Industrial Science and Technology, Koto-ku, Tokyo 135-0064, Japan.

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http://dx.doi.org/10.1093/database/bat073DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3807080PMC
March 2014

Computational analysis and functional expression of ancestral copepod luciferase.

Gene 2013 Oct 23;528(2):201-5. Epub 2013 Jul 23.

Health Research Institute, National Institute of Advanced Industrial Science and Technology (AIST), 1-8-31 Midorigaoka, Ikeda, Osaka 563-8577, Japan.

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http://dx.doi.org/10.1016/j.gene.2013.07.011DOI Listing
October 2013

PCDq: human protein complex database with quality index which summarizes different levels of evidences of protein complexes predicted from h-invitational protein-protein interactions integrative dataset.

BMC Syst Biol 2012 12;6 Suppl 2:S7. Epub 2012 Dec 12.

Integrated Databases and Systems Biology Team, Biological Information Research Center, National Institute of Advanced Industrial Science and Technology (AIST), Tokyo, Japan.

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http://dx.doi.org/10.1186/1752-0509-6-S2-S7DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3521179PMC
June 2013

Reconstructing the demographic history of the human lineage using whole-genome sequences from human and three great apes.

Genome Biol Evol 2012 ;4(11):1133-45

Biomedicinal Information Research Center, National Institute of Advanced Industrial Science and Technology, Koto-ku, Tokyo, Japan.

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https://academic.oup.com/gbe/article-lookup/doi/10.1093/gbe/
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http://dx.doi.org/10.1093/gbe/evs075DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3752010PMC
April 2013

H-InvDB in 2013: an omics study platform for human functional gene and transcript discovery.

Nucleic Acids Res 2013 Jan 28;41(Database issue):D915-9. Epub 2012 Nov 28.

Integrated Database and Systems Biology Team, Biomedicinal Information Research Center, National Institute of Advanced Industrial Science and Technology, Aomi 2-4-7, Koto-ku, Tokyo 135-0064, Japan.

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http://dx.doi.org/10.1093/nar/gks1245DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3531145PMC
January 2013

Full-length transcriptome-based H-InvDB throws a new light on chromosome-centric proteomics.

J Proteome Res 2013 Jan 17;12(1):62-6. Epub 2012 Dec 17.

Biomedicinal Information Research Center, National Institute of Advanced Industrial Science and Technology, Tokyo, Japan.

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http://dx.doi.org/10.1021/pr300861aDOI Listing
January 2013

Evolutionary growth process of highly conserved sequences in vertebrate genomes.

Gene 2012 Aug 9;504(1):1-5. Epub 2012 May 9.

Biomedicinal Information Research Center, National Institute of Advanced Industrial Science and Technology, 2-4-7 Aomi, Tokyo 135-0064, Japan.

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http://dx.doi.org/10.1016/j.gene.2012.05.003DOI Listing
August 2012

Abundance of ultramicro inversions within local alignments between human and chimpanzee genomes.

BMC Evol Biol 2011 Oct 19;11:308. Epub 2011 Oct 19.

Biomedicinal Information Research Center, National Institute of Advanced Industrial Science and Technology, Aomi 2-4-7, Koto-ku, Tokyo, Japan.

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http://dx.doi.org/10.1186/1471-2148-11-308DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3227671PMC
October 2011

A comprehensive survey of human polymorphisms at conserved splice dinucleotides and its evolutionary relationship with alternative splicing.

BMC Evol Biol 2010 Apr 30;10:122. Epub 2010 Apr 30.

Biomedicinal Information Research Center, National Institute of Advanced Industrial Science and Technology, 2-42 Aomi Koto-ku, Tokyo135-0064, Japan.

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http://bmcevolbiol.biomedcentral.com/articles/10.1186/1471-2
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http://dx.doi.org/10.1186/1471-2148-10-122DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2882926PMC
April 2010

H-DBAS: human-transcriptome database for alternative splicing: update 2010.

Nucleic Acids Res 2010 Jan 7;38(Database issue):D86-90. Epub 2009 Dec 7.

Integrated Database and Systems Biology Team, Biomedicinal Information Research Center National Institute of Advanced Industrial Science and Technology, AIST Bio-IT Research Bldg Aomi 2-4-7, Koto-ku, Tokyo 135-0064, Japan.

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https://academic.oup.com/nar/article-lookup/doi/10.1093/nar/
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http://dx.doi.org/10.1093/nar/gkp984DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2808982PMC
January 2010

G-compass: a web-based comparative genome browser between human and other vertebrate genomes.

Bioinformatics 2009 Dec 21;25(24):3321-2. Epub 2009 Oct 21.

Japan Biological Information Research Center, Japan Biological Informatics Consortium, Aomi 2-42, Koto-ku, Tokyo 135-0064, Japan.

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http://dx.doi.org/10.1093/bioinformatics/btp594DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2788932PMC
December 2009

Hyperlink Management System and ID Converter System: enabling maintenance-free hyperlinks among major biological databases.

Nucleic Acids Res 2009 Jul 19;37(Web Server issue):W17-22. Epub 2009 May 19.

Biomedicinal Information Research Center, National Institute of Advanced Industrial Science and Technology, 2-42 Aomi, Koto-ku, Tokyo 135-0064, Japan.

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https://academic.oup.com/nar/article-lookup/doi/10.1093/nar/
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http://dx.doi.org/10.1093/nar/gkp355DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2703917PMC
July 2009

The evolutionary study of small RNA-directed gene silencing pathways by investigating RNase III enzymes.

Gene 2009 Apr 31;435(1-2):1-8. Epub 2009 Jan 31.

Center for Information Biology and DNA Data Bank of Japan, National Institute of Genetics, Yata, Mishima, Shizuoka, Japan.

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http://dx.doi.org/10.1016/j.gene.2008.12.022DOI Listing
April 2009

VarySysDB: a human genetic polymorphism database based on all H-InvDB transcripts.

Nucleic Acids Res 2009 Jan 25;37(Database issue):D810-5. Epub 2008 Oct 25.

Integrated Database and Systems Biology Team, Biomedicinal Information Research Center, National Institute of Advanced Industrial Science and Technology, Japan Biological Informatics Consortium, Hitachi Software Engineering Co., Ltd., Tokyo, Japan.

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http://dx.doi.org/10.1093/nar/gkn798DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2686441PMC
January 2009

The evolutionary relationship between gene duplication and alternative splicing.

Gene 2008 Dec 12;427(1-2):19-31. Epub 2008 Sep 12.

Center for Information Biology and DNA Data Bank of Japan, National Institute of Genetics, Yata 1111, Mishima, Shizuoka, 411-8540, Japan.

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http://dx.doi.org/10.1016/j.gene.2008.09.002DOI Listing
December 2008

Distribution and effects of nonsense polymorphisms in human genes.

PLoS One 2008 14;3(10):e3393. Epub 2008 Oct 14.

Biological Information Research Center, National Institute of Advanced Industrial Science and Technology, Tokyo, Japan.

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http://journals.plos.org/plosone/article?id=10.1371/journal.pone.0003393PLOS
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2561068PMC
December 2008

Low conservation and species-specific evolution of alternative splicing in humans and mice: comparative genomics analysis using well-annotated full-length cDNAs.

Nucleic Acids Res 2008 Nov 5;36(20):6386-95. Epub 2008 Oct 5.

Integrated Database and Systems Biology Team, Biomedicinal Information Research Center, National Institute of Advanced Industrial Science and Technology, AIST Bio-IT Research Building, Aomi 2-42, Koto-ku, Tokyo, Japan.

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https://academic.oup.com/nar/article-lookup/doi/10.1093/nar/
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http://dx.doi.org/10.1093/nar/gkn677DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2582632PMC
November 2008

Two different classes of co-occurring motif pairs found by a novel visualization method in human promoter regions.

BMC Genomics 2008 Mar 1;9:112. Epub 2008 Mar 1.

Integrated Database Group, Japan Biological Information Research Center (JBIRC), Japan Biological Informatics Consortium, Aomi 2-41, Koto-ku, Tokyo, 135-0064, Japan.

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http://dx.doi.org/10.1186/1471-2164-9-112DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2292176PMC
March 2008

The H-Invitational Database (H-InvDB), a comprehensive annotation resource for human genes and transcripts.

Authors:
Chisato Yamasaki Katsuhiko Murakami Yasuyuki Fujii Yoshiharu Sato Erimi Harada Jun-ichi Takeda Takayuki Taniya Ryuichi Sakate Shingo Kikugawa Makoto Shimada Motohiko Tanino Kanako O Koyanagi Roberto A Barrero Craig Gough Hong-Woo Chun Takuya Habara Hideki Hanaoka Yosuke Hayakawa Phillip B Hilton Yayoi Kaneko Masako Kanno Yoshihiro Kawahara Toshiyuki Kawamura Akihiro Matsuya Naoki Nagata Kensaku Nishikata Akiko Ogura Noda Shin Nurimoto Naomi Saichi Hiroaki Sakai Ryoko Sanbonmatsu Rie Shiba Mami Suzuki Kazuhiko Takabayashi Aiko Takahashi Takuro Tamura Masayuki Tanaka Susumu Tanaka Fusano Todokoro Kaori Yamaguchi Naoyuki Yamamoto Toshihisa Okido Jun Mashima Aki Hashizume Lihua Jin Kyung-Bum Lee Yi-Chueh Lin Asami Nozaki Katsunaga Sakai Masahito Tada Satoru Miyazaki Takashi Makino Hajime Ohyanagi Naoki Osato Nobuhiko Tanaka Yoshiyuki Suzuki Kazuho Ikeo Naruya Saitou Hideaki Sugawara Claire O'Donovan Tamara Kulikova Eleanor Whitfield Brian Halligan Mary Shimoyama Simon Twigger Kei Yura Kouichi Kimura Tomohiro Yasuda Tetsuo Nishikawa Yutaka Akiyama Chie Motono Yuri Mukai Hideki Nagasaki Makiko Suwa Paul Horton Reiko Kikuno Osamu Ohara Doron Lancet Eric Eveno Esther Graudens Sandrine Imbeaud Marie Anne Debily Yoshihide Hayashizaki Clara Amid Michael Han Andreas Osanger Toshinori Endo Michael A Thomas Mika Hirakawa Wojciech Makalowski Mitsuteru Nakao Nam-Soon Kim Hyang-Sook Yoo Sandro J De Souza Maria de Fatima Bonaldo Yoshihito Niimura Vladimir Kuryshev Ingo Schupp Stefan Wiemann Matthew Bellgard Masafumi Shionyu Libin Jia Danielle Thierry-Mieg Jean Thierry-Mieg Lukas Wagner Qinghua Zhang Mitiko Go Shinsei Minoshima Masafumi Ohtsubo Kousuke Hanada Peter Tonellato Takao Isogai Ji Zhang Boris Lenhard Sangsoo Kim Zhu Chen Ursula Hinz Anne Estreicher Kenta Nakai Izabela Makalowska Winston Hide Nicola Tiffin Laurens Wilming Ranajit Chakraborty Marcelo Bento Soares Maria Luisa Chiusano Yutaka Suzuki Charles Auffray Yumi Yamaguchi-Kabata Takeshi Itoh Teruyoshi Hishiki Satoshi Fukuchi Ken Nishikawa Sumio Sugano Nobuo Nomura Yoshio Tateno Tadashi Imanishi Takashi Gojobori

Nucleic Acids Res 2008 Jan 18;36(Database issue):D793-9. Epub 2007 Dec 18.

Japan Biological Information Research Center, Japan Biological Informatics Consortium, Japan.

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http://dx.doi.org/10.1093/nar/gkm999DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2238988PMC
January 2008

The Rice Annotation Project Database (RAP-DB): 2008 update.

Nucleic Acids Res 2008 Jan 17;36(Database issue):D1028-33. Epub 2007 Dec 17.

National Institute of Agrobiological Sciences, Ibaraki 305-8602, Japan.

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http://dx.doi.org/10.1093/nar/gkm978DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2238920PMC
January 2008

Mapping of chimpanzee full-length cDNAs onto the human genome unveils large potential divergence of the transcriptome.

Gene 2007 Sep 20;399(1):1-10. Epub 2007 Apr 20.

Japan Biological Information Research Center, Japan Biological Informatics Consortium: AIST Bio-IT Research Bldg. 7F, 2-42 Aomi, Koto-ku, Tokyo, 135-0064, Japan.

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http://dx.doi.org/10.1016/j.gene.2007.04.013DOI Listing
September 2007

Frequent emergence and functional resurrection of processed pseudogenes in the human and mouse genomes.

Gene 2007 Mar 18;389(2):196-203. Epub 2006 Nov 18.

Japan Biological Information Research Center, Japan Biological Informatics Consortium, AIST Bio-IT Research Bldg 7F, 2-42 Aomi, Tokyo, Japan.

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http://dx.doi.org/10.1016/j.gene.2006.11.007DOI Listing
March 2007

Curated genome annotation of Oryza sativa ssp. japonica and comparative genome analysis with Arabidopsis thaliana.

Genome Res 2007 Feb 8;17(2):175-83. Epub 2007 Jan 8.

Division of Genome and Biodiversity Research, National Institute of Agrobiological Sciences, Tsukuba, Ibaraki 305-8602, Japan.

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http://dx.doi.org/10.1101/gr.5509507DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC1781349PMC
February 2007

Cancer-related mutations in BRCA1-BRCT cause long-range structural changes in protein-protein binding sites: a molecular dynamics study.

Proteins 2007 Jan;66(1):69-86

Integrated Database Group, Japan Biological Information Research Center, Japan Biological Informatics Consortium, AIST Bio-IT Research Building, 2-42 Aomi, Koto-ku, Tokyo 135-0064, Japan.

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http://doi.wiley.com/10.1002/prot.21188
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http://dx.doi.org/10.1002/prot.21188DOI Listing
January 2007

H-DBAS: alternative splicing database of completely sequenced and manually annotated full-length cDNAs based on H-Invitational.

Nucleic Acids Res 2007 Jan 27;35(Database issue):D104-9. Epub 2006 Nov 27.

Integrated Database Group, Japan Biological Information Research Center, Japan Biological Informatics Consortium, AIST Bio-IT Research, Building Aomi 2-42, Koto-ku, Tokyo 135-0064, Japan.

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http://dx.doi.org/10.1093/nar/gkl854DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC1716722PMC
January 2007

A genome-wide survey of changes in protein evolutionary rates across four closely related species of Saccharomyces sensu stricto group.

BMC Evol Biol 2007 Jan 29;7. Epub 2007 Jan 29.

Integrated Database Group, Biological Information Research Center, National Institute of Advanced Industrial Science and Technology, 2-42 Aomi, Koto-ku, Tokyo 135-0064, Japan.

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http://www.biomedcentral.com/1471-2148/7/9
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http://dx.doi.org/10.1186/1471-2148-7-9DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC1790889PMC
January 2007

Beta-globin gene cluster haplotype frequencies in Khalkhs and Buryats of Mongolia.

Hum Biol 2006 Dec;78(6):749-56

Laboratory of Biology, Naruto University of Education, Naruto, Tokushima 772-8502, Japan.

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http://dx.doi.org/10.1353/hub.2007.0017DOI Listing
December 2006

Alternative splicing in human transcriptome: functional and structural influence on proteins.

Gene 2006 Oct 2;380(2):63-71. Epub 2006 Jun 2.

Quantum Bioinformatics Team, Center for Computational Science and Engineering, Japan Atomic Energy Agency, 8-1 Umemidai, Kizu-cho, Souraku-gun, Kyoto 619-0215, Japan.

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http://dx.doi.org/10.1016/j.gene.2006.05.015DOI Listing
October 2006

TACT: Transcriptome Auto-annotation Conducting Tool of H-InvDB.

Nucleic Acids Res 2006 Jul;34(Web Server issue):W345-9

Integrated Database Group, Japan Biological Information Research Center, Japan Biological Informatics Consortium, AIST Waterfront Bio-IT Research Building, 2-42 Aomi, Koto-ku, Tokyo 135-0064, Japan.

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http://dx.doi.org/10.1093/nar/gkl283DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC1538819PMC
July 2006

The Rice Annotation Project Database (RAP-DB): hub for Oryza sativa ssp. japonica genome information.

Nucleic Acids Res 2006 Jan;34(Database issue):D741-4

Center for Information Biology and DNA Data Bank of Japan, National Institute of Genetics, Research Organization of Information and Systems, 1111 Yata, Mishima, Shizuoka 411-8540, Japan.

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http://dx.doi.org/10.1093/nar/gkj094DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC1347456PMC
January 2006

A web tool for comparative genomics: G-compass.

Gene 2005 Dec 5;364:45-52. Epub 2005 Oct 5.

Japan Biological Information Research Center, Japan Biological Informatics Consortium, AIST Bio-IT Research Building 7F, 2-42, Aomi, Koto-ku, Tokyo, Japan.

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http://linkinghub.elsevier.com/retrieve/pii/S037811190500331
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http://dx.doi.org/10.1016/j.gene.2005.05.043DOI Listing
December 2005

Investigation of protein functions through data-mining on integrated human transcriptome database, H-Invitational database (H-InvDB).

Gene 2005 Dec 26;364:99-107. Epub 2005 Sep 26.

Biological Information Research Center, National Institute of Advanced Industrial Science and Technology, AIST Waterfront Bio-IT Research Building, 2-42 Aomi, Koto-ku, Tokyo 135-0064, Japan.

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http://dx.doi.org/10.1016/j.gene.2005.05.036DOI Listing
December 2005

[Human transcriptome].

Tanpakushitsu Kakusan Koso 2005 Dec;50(16 Suppl):2059-64

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December 2005

Comparative genomics of bidirectional gene pairs and its implications for the evolution of a transcriptional regulation system.

Gene 2005 Jul;353(2):169-76

Graduate School of Information Science and Technology, Hokkaido University, Sapporo, Hokkaido 060-0814, Japan.

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http://dx.doi.org/10.1016/j.gene.2005.04.027DOI Listing
July 2005

Length variation of CAG/CAA triplet repeats in 50 genes among 16 inbred mouse strains.

Gene 2005 Apr;349:107-19

Center for Information Biology and DNA Data Bank of Japan, National Institute of Genetics, 1111 Yata, Mishima, Shizuoka-ken 411-8540, Japan.

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http://dx.doi.org/10.1016/j.gene.2004.11.050DOI Listing
April 2005

Novel algorithm for automated genotyping of microsatellites.

Nucleic Acids Res 2004 19;32(20):6069-77. Epub 2004 Nov 19.

Japan Biological Information Research Center, Japan Biological Informatics Consortium, Tokyo, Japan.

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http://dx.doi.org/10.1093/nar/gkh946DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC534627PMC
November 2004

Characteristic beta-globin gene cluster haplotypes of Evenkis and Oroqens in north China.

Hum Biol 2004 Oct;76(5):765-78

Laboratory of Biology, Naruto University of Education, Tokushima 772-8502, Japan.

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http://dx.doi.org/10.1353/hub.2005.0009DOI Listing
October 2004

[H-Invitational Database: integrated database of human genes].

Tanpakushitsu Kakusan Koso 2004 Aug;49(11 Suppl):1937-43

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August 2004

Integrative annotation of 21,037 human genes validated by full-length cDNA clones.

Authors:
Tadashi Imanishi Takeshi Itoh Yutaka Suzuki Claire O'Donovan Satoshi Fukuchi Kanako O Koyanagi Roberto A Barrero Takuro Tamura Yumi Yamaguchi-Kabata Motohiko Tanino Kei Yura Satoru Miyazaki Kazuho Ikeo Keiichi Homma Arek Kasprzyk Tetsuo Nishikawa Mika Hirakawa Jean Thierry-Mieg Danielle Thierry-Mieg Jennifer Ashurst Libin Jia Mitsuteru Nakao Michael A Thomas Nicola Mulder Youla Karavidopoulou Lihua Jin Sangsoo Kim Tomohiro Yasuda Boris Lenhard Eric Eveno Yoshiyuki Suzuki Chisato Yamasaki Jun-ichi Takeda Craig Gough Phillip Hilton Yasuyuki Fujii Hiroaki Sakai Susumu Tanaka Clara Amid Matthew Bellgard Maria de Fatima Bonaldo Hidemasa Bono Susan K Bromberg Anthony J Brookes Elspeth Bruford Piero Carninci Claude Chelala Christine Couillault Sandro J de Souza Marie-Anne Debily Marie-Dominique Devignes Inna Dubchak Toshinori Endo Anne Estreicher Eduardo Eyras Kaoru Fukami-Kobayashi Gopal R Gopinath Esther Graudens Yoonsoo Hahn Michael Han Ze-Guang Han Kousuke Hanada Hideki Hanaoka Erimi Harada Katsuyuki Hashimoto Ursula Hinz Momoki Hirai Teruyoshi Hishiki Ian Hopkinson Sandrine Imbeaud Hidetoshi Inoko Alexander Kanapin Yayoi Kaneko Takeya Kasukawa Janet Kelso Paul Kersey Reiko Kikuno Kouichi Kimura Bernhard Korn Vladimir Kuryshev Izabela Makalowska Takashi Makino Shuhei Mano Regine Mariage-Samson Jun Mashima Hideo Matsuda Hans-Werner Mewes Shinsei Minoshima Keiichi Nagai Hideki Nagasaki Naoki Nagata Rajni Nigam Osamu Ogasawara Osamu Ohara Masafumi Ohtsubo Norihiro Okada Toshihisa Okido Satoshi Oota Motonori Ota Toshio Ota Tetsuji Otsuki Dominique Piatier-Tonneau Annemarie Poustka Shuang-Xi Ren Naruya Saitou Katsunaga Sakai Shigetaka Sakamoto Ryuichi Sakate Ingo Schupp Florence Servant Stephen Sherry Rie Shiba Nobuyoshi Shimizu Mary Shimoyama Andrew J Simpson Bento Soares Charles Steward Makiko Suwa Mami Suzuki Aiko Takahashi Gen Tamiya Hiroshi Tanaka Todd Taylor Joseph D Terwilliger Per Unneberg Vamsi Veeramachaneni Shinya Watanabe Laurens Wilming Norikazu Yasuda Hyang-Sook Yoo Marvin Stodolsky Wojciech Makalowski Mitiko Go Kenta Nakai Toshihisa Takagi Minoru Kanehisa Yoshiyuki Sakaki John Quackenbush Yasushi Okazaki Yoshihide Hayashizaki Winston Hide Ranajit Chakraborty Ken Nishikawa Hideaki Sugawara Yoshio Tateno Zhu Chen Michio Oishi Peter Tonellato Rolf Apweiler Kousaku Okubo Lukas Wagner Stefan Wiemann Robert L Strausberg Takao Isogai Charles Auffray Nobuo Nomura Takashi Gojobori Sumio Sugano

PLoS Biol 2004 Jun 20;2(6):e162. Epub 2004 Apr 20.

Integrated Database Group, Biological Information Research Center, National Institute of Advanced Industrial Science and Technology, Tokyo, Japan.

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http://dx.doi.org/10.1371/journal.pbio.0020162DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC393292PMC
June 2004