Taane G Clark

Taane G Clark

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Taane G Clark

Taane G Clark

Publications by authors named "Taane G Clark"

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Genetic diversity and risk factors for the transmission of antimicrobial resistance across human, animals and environmental compartments in East Africa: a review.

Antimicrob Resist Infect Control 2020 Aug 6;9(1):127. Epub 2020 Aug 6.

Department of Microbiology and Immunology, School of Medicine, Muhimbili University of Health and Allied Sciences, Dar es Salaam, Tanzania.

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http://dx.doi.org/10.1186/s13756-020-00786-7DOI Listing
August 2020

Differences in the frequency of genetic variants associated with iron imbalance among global populations.

PLoS One 2020 1;15(7):e0235141. Epub 2020 Jul 1.

Faculty of Infectious and Tropical Diseases, London School of Hygiene & Tropical Medicine, London, United Kingdom.

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http://journals.plos.org/plosone/article?id=10.1371/journal.pone.0235141PLOS
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC7329092PMC
July 2020

Development and Validation of a Nomogram for Assessing Survival in Patients with COVID-19 Pneumonia.

Clin Infect Dis 2020 Jul 10. Epub 2020 Jul 10.

Shanxi Bethune Hospital, Shanxi Academy of Medical Sciences, Shanxi Medical University; Shanxi Tongji Hospital, Tongji Medical College, Huazhong University of Science and Technology, Taiyuan, China.

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http://dx.doi.org/10.1093/cid/ciaa963DOI Listing
July 2020

Bacterial and host determinants of cough aerosol culture positivity in patients with drug-resistant versus drug-susceptible tuberculosis.

Nat Med 2020 Jun 29. Epub 2020 Jun 29.

Centre for Lung Infection and Immunity, Division of Pulmonology, Department of Medicine and UCT Lung Institute & South African MRC/UCT Centre for the Study of Antimicrobial Resistance, University of Cape Town, Cape Town, South Africa.

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http://dx.doi.org/10.1038/s41591-020-0940-2DOI Listing
June 2020

Machine Learning Predicts Accurately Drug Resistance From Whole Genome Sequencing Data.

Front Genet 2019 26;10:922. Epub 2019 Sep 26.

Faculties of Epidemiology & Population Health and Infectious & Tropical Diseases, London School of Hygiene & Tropical Medicine, London, United Kingdom.

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http://dx.doi.org/10.3389/fgene.2019.00922DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6775242PMC
September 2019

Diverticulosis and nine connective tissue disorders: epidemiological support for an association.

Connect Tissue Res 2019 07 5;60(4):389-398. Epub 2019 Feb 5.

f Waitemata District Health Board , University of Auckland, and Geriatrician , Auckland , New Zealand.

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http://dx.doi.org/10.1080/03008207.2019.1570169DOI Listing
July 2019

SV-Pop: population-based structural variant analysis and visualization.

BMC Bioinformatics 2019 Mar 13;20(1):136. Epub 2019 Mar 13.

Department of Pathogen Molecular Biology, London School of Hygiene and Tropical Medicine, London, WC1E 7HT, UK.

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http://dx.doi.org/10.1186/s12859-019-2718-4DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6417133PMC
March 2019

Genome-wide analysis of Mycobacterium tuberculosis polymorphisms reveals lineage-specific associations with drug resistance.

BMC Genomics 2019 Mar 29;20(1):252. Epub 2019 Mar 29.

Pathogen Molecular Biology Department, Faculty of Infectious and Tropical Diseases, London School of Hygiene and Tropical Medicine, Keppel Street, London, WC1E 7HT, UK.

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http://dx.doi.org/10.1186/s12864-019-5615-3DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6440112PMC
March 2019

PrimedRPA: primer design for recombinase polymerase amplification assays.

Bioinformatics 2019 02;35(4):682-684

Pathogen Molecular Biology Department, London School of Hygiene and Tropical Medicine (LSHTM), London, UK.

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http://dx.doi.org/10.1093/bioinformatics/bty701DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6379019PMC
February 2019

Genetic Diversity of , Coding for a Main Efflux Pump of .

Front Genet 2018 9;9:710. Epub 2019 Jan 9.

Global Health and Tropical Medicine, Instituto de Higiene e Medicina Tropical, Universidade NOVA de Lisboa, Lisbon, Portugal.

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http://dx.doi.org/10.3389/fgene.2018.00710DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6333699PMC
January 2019

Hand Grip Strength as a Clinical Biomarker for ME/CFS and Disease Severity.

Front Neurol 2018 27;9:992. Epub 2018 Nov 27.

Department of Clinical Research, Faculty of Infectious and Tropical Diseases, International Centre for Evidence in Disability, London School of Hygiene and Tropical Medicine, London, United Kingdom.

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http://dx.doi.org/10.3389/fneur.2018.00992DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6277492PMC
November 2018

Understanding molecular consequences of putative drug resistant mutations in Mycobacterium tuberculosis.

Sci Rep 2018 10 18;8(1):15356. Epub 2018 Oct 18.

Department of Pathogen Molecular Biology, London School of Hygiene and Tropical Medicine, Keppel Street, London, WC1E 7HT, UK.

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http://www.nature.com/articles/s41598-018-33370-6
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http://dx.doi.org/10.1038/s41598-018-33370-6DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6193939PMC
October 2018

Use of whole genome sequencing in surveillance of drug resistant tuberculosis.

Expert Rev Anti Infect Ther 2018 05 9;16(5):433-442. Epub 2018 May 9.

c Faculty of Infectious and Tropical Diseases and Faculty of Epidemiology and Population Health , London School of Hygiene & Tropical Medicine , London , United Kingdom.

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http://dx.doi.org/10.1080/14787210.2018.1472577DOI Listing
May 2018

A reference genome and methylome for the Plasmodium knowlesi A1-H.1 line.

Int J Parasitol 2018 03 16;48(3-4):191-196. Epub 2017 Dec 16.

Faculty of Infectious and Tropical Diseases, London School of Hygiene and Tropical Medicine, London, United Kingdom; Faculty of Epidemiology and Population Health, London School of Hygiene and Tropical Medicine, London, United Kingdom. Electronic address:

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http://dx.doi.org/10.1016/j.ijpara.2017.09.008DOI Listing
March 2018

Single nucleotide polymorphisms in efflux pumps genes in extensively drug resistant Mycobacterium tuberculosis isolates from Pakistan.

Tuberculosis (Edinb) 2017 12 3;107:20-30. Epub 2017 Aug 3.

Department of Pathology and Laboratory Medicine, Aga Khan University Hospital, Karachi, Pakistan. Electronic address:

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http://dx.doi.org/10.1016/j.tube.2017.07.012DOI Listing
December 2017

A multiple genome analysis of Mycobacterium tuberculosis reveals specific novel genes and mutations associated with pyrazinamide resistance.

BMC Genomics 2017 Oct 11;18(1):769. Epub 2017 Oct 11.

Laboratorio de Bioinformática y Biología Molecular. Laboratorios de Investigación y Desarrollo, Facultad de Ciencias y Filosofía, Universidad Peruana Cayetano Heredia, Av. Honorio Delgado 430, San Martín de Porras, 31, Lima, Peru.

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http://dx.doi.org/10.1186/s12864-017-4146-zDOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5637355PMC
October 2017

Genome-wide mutagenesis and multi-drug resistance in American trypanosomes induced by the front-line drug benznidazole.

Sci Rep 2017 10 31;7(1):14407. Epub 2017 Oct 31.

Department of Pathogen Molecular Biology, London School of Hygiene and Tropical Medicine, Keppel Street, London, WC1E 7HT, UK.

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http://dx.doi.org/10.1038/s41598-017-14986-6DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5663738PMC
October 2017

Genetic diversity of next generation antimalarial targets: A baseline for drug resistance surveillance programmes.

Int J Parasitol Drugs Drug Resist 2017 08 9;7(2):174-180. Epub 2017 Mar 9.

Faculty of Infectious and Tropical Diseases, London School of Hygiene and Tropical Medicine, London, UK. Electronic address:

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http://dx.doi.org/10.1016/j.ijpddr.2017.03.001DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5379905PMC
August 2017

Primary macrophages and J774 cells respond differently to infection with Mycobacterium tuberculosis.

Sci Rep 2017 02 8;7:42225. Epub 2017 Feb 8.

Pathogen Molecular Biology Department, London School of Hygiene and Tropical Medicine, London, UK.

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http://dx.doi.org/10.1038/srep42225DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5296737PMC
February 2017

The UK ME/CFS Biobank for biomedical research on Myalgic Encephalomyelitis/Chronic Fatigue Syndrome (ME/CFS) and Multiple Sclerosis.

Open J Bioresour 2017 20;4. Epub 2017 Feb 20.

CureME Research Team, International Centre for Evidence in Disability (ICED), Department of Clinical Research (CRD), Faculty of Infectious and Tropical Diseases at the London School of Hygiene & Tropical Medicine, Keppel St, London WC1E 7HT, UK.

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http://dx.doi.org/10.5334/ojb.28DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5482226PMC
February 2017

Characterisation of the opposing effects of G6PD deficiency on cerebral malaria and severe malarial anaemia.

Elife 2017 01 9;6. Epub 2017 Jan 9.

Wellcome Trust Centre for Human Genetics, University of Oxford, Oxford, United Kingdom.

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http://dx.doi.org/10.7554/eLife.15085DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5222559PMC
January 2017

The variability and reproducibility of whole genome sequencing technology for detecting resistance to anti-tuberculous drugs.

Genome Med 2016 12 22;8(1):132. Epub 2016 Dec 22.

Department of Pathogen Molecular Biology, Faculty of Infectious and Tropical Diseases, London School of Hygiene & Tropical Medicine, Keppel Street, WC1E 7HT, London, UK.

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http://dx.doi.org/10.1186/s13073-016-0385-xDOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5178084PMC
December 2016

Alternate efflux pump mechanism may contribute to drug resistance in extensively drug-resistant isolates of Mycobacterium tuberculosis.

Int J Mycobacteriol 2016 Dec 22;5 Suppl 1:S97-S98. Epub 2016 Nov 22.

Department of Pathology and Laboratory Medicine, The Aga Khan University, Stadium Road, Karachi 74800, Pakistan. Electronic address:

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http://dx.doi.org/10.1016/j.ijmyco.2016.09.064DOI Listing
December 2016

Turkish and Japanese Mycobacterium tuberculosis sublineages share a remote common ancestor.

Infect Genet Evol 2016 11 14;45:461-473. Epub 2016 Oct 14.

Institute for Integrative Biology of the Cell (I2BC), CEA, CNRS, Univ Paris-Sud, Université Paris-Saclay, 91198, Gif-sur-Yvette cedex, France.

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http://dx.doi.org/10.1016/j.meegid.2016.10.009DOI Listing
November 2016

Genome-scale comparison of expanded gene families in Plasmodium ovale wallikeri and Plasmodium ovale curtisi with Plasmodium malariae and with other Plasmodium species.

Int J Parasitol 2016 10 5;46(11):685-96. Epub 2016 Jul 5.

Pathogen Genomics Laboratory, Biological and Environmental Sciences and Engineering (BESE) Division, King Abdullah University of Science and Technology (KAUST), Thuwal, Jeddah 23955-6900, Saudi Arabia; Global Station for Zoonosis Control, Global Institution for Collaborative Research and Education (GI-CoRE), Hokkaido University, N20 W10 Kita-ku, Sapporo 001-0020, Japan. Electronic address:

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http://dx.doi.org/10.1016/j.ijpara.2016.05.009DOI Listing
October 2016

Further Evidence of Increasing Diversity of Plasmodium vivax in the Republic of Korea in Recent Years.

PLoS One 2016 18;11(3):e0151514. Epub 2016 Mar 18.

Global and Tropical Health Division, Menzies School of Health Research and Charles Darwin University, Darwin, NT 0810, Australia.

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http://journals.plos.org/plosone/article?id=10.1371/journal.pone.0151514PLOS
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4798397PMC
August 2016

Whole Genome Sequencing Shows a Low Proportion of Tuberculosis Disease Is Attributable to Known Close Contacts in Rural Malawi.

PLoS One 2015 16;10(7):e0132840. Epub 2015 Jul 16.

Faculty of Epidemiology and Population Health, London School of Hygiene & Tropical Medicine, London, United Kingdom; Faculty of Infectious and Tropical Diseases, London School of Hygiene & Tropical Medicine, London, United Kingdom.

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http://journals.plos.org/plosone/article?id=10.1371/journal.pone.0132840PLOS
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4504505PMC
April 2016

The draft genome of Mycobacterium aurum, a potential model organism for investigating drugs against Mycobacterium tuberculosis and Mycobacterium leprae.

Int J Mycobacteriol 2015 09 4;4(3):207-16. Epub 2015 Jun 4.

Faculty of Infectious and Tropical Diseases, London School of Hygiene & Tropical Medicine, Keppel Street, London WC1E 7HT, United Kingdom; Faculty of Epidemiology and Population Health, London School of Hygiene & Tropical Medicine, Keppel Street, London WC1E 7HT, United Kingdom.

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http://dx.doi.org/10.1016/j.ijmyco.2015.05.001DOI Listing
September 2015

PhyTB: Phylogenetic tree visualisation and sample positioning for M. tuberculosis.

BMC Bioinformatics 2015 May 13;16:155. Epub 2015 May 13.

Faculty of Infectious and Tropical Diseases, London School of Hygiene & Tropical Medicine, Keppel St, London, UK.

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http://dx.doi.org/10.1186/s12859-015-0603-3DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4429496PMC
May 2015

Imputation-based population genetics analysis of Plasmodium falciparum malaria parasites.

PLoS Genet 2015 Apr 30;11(4):e1005131. Epub 2015 Apr 30.

Faculty of Infectious and Tropical Diseases, London School of Hygiene and Tropical Medicine, London, United Kingdom; Faculty of Epidemiology and Population Health, London School of Hygiene and Tropical Medicine, London, United Kingdom.

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http://dx.doi.org/10.1371/journal.pgen.1005131DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4415759PMC
April 2015

African glucose-6-phosphate dehydrogenase alleles associated with protection from severe malaria in heterozygous females in Tanzania.

PLoS Genet 2015 Feb 11;11(2):e1004960. Epub 2015 Feb 11.

Pathogen Molecular Biology Department, Faculty of Infectious and Tropical Diseases, London School of Hygiene and Tropical Medicine, London, United Kingdom; Department of Infectious Disease Epidemiology, Faculty of Epidemiology and Population Health, London School of Hygiene and Tropical Medicine, London, United Kingdom.

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http://dx.doi.org/10.1371/journal.pgen.1004960DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4335500PMC
February 2015

A robust SNP barcode for typing Mycobacterium tuberculosis complex strains.

Nat Commun 2014 Sep 1;5:4812. Epub 2014 Sep 1.

1] Faculty of Infectious and Tropical Diseases, London School of Hygiene and Tropical Medicine, London WC1E 7HT, UK [2] Faculty of Epidemiology and Population Health, London School of Hygiene and Tropical Medicine, London WC1E 7HT, UK.

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http://dx.doi.org/10.1038/ncomms5812DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4166679PMC
September 2014