Szymon M Kielbasa

Szymon M Kielbasa

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Szymon M Kielbasa

Szymon M Kielbasa

Publications by authors named "Szymon M Kielbasa"

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Deacetylation Inhibition Reverses PABPN1-Dependent Muscle Wasting.

iScience 2019 Feb 22;12:318-332. Epub 2019 Jan 22.

Department of Human Genetics, Leiden University Medical Center, Leiden, The Netherlands. Electronic address:

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http://dx.doi.org/10.1016/j.isci.2019.01.024DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6370712PMC
February 2019

RNA-seq analysis of Lgr6 stem cells and identification of an Lgr6 isoform.

Exp Dermatol 2018 10 20;27(10):1172-1175. Epub 2017 Dec 20.

Department of Dermatology, Leiden University Medical Center, Leiden, The Netherlands.

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http://dx.doi.org/10.1111/exd.13453DOI Listing
October 2018

The distinct transcriptomes of slow and fast adult muscles are delineated by noncoding RNAs.

FASEB J 2018 03 3;32(3):1579-1590. Epub 2018 Jan 3.

Department of Human Genetics, Leiden University Medical Center, Leiden, The Netherlands.

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http://dx.doi.org/10.1096/fj.201700861RDOI Listing
March 2018

Selection patterns of B-cell receptors and the natural history of follicular lymphoma.

Br J Haematol 2016 12 21;175(5):972-975. Epub 2015 Dec 21.

Department of Haematology, Leiden University Medical Centre, Leiden, The Netherlands.

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http://dx.doi.org/10.1111/bjh.13901DOI Listing
December 2016

CpG deamination creates transcription factor-binding sites with high efficiency.

Genome Biol Evol 2011 19;3:1304-11. Epub 2011 Oct 19.

Department of Computational Molecular Biology, Max Planck Institute for Molecular Genetics, Berlin, Germany.

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http://dx.doi.org/10.1093/gbe/evr107DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3228489PMC
March 2012

Adaptive seeds tame genomic sequence comparison.

Genome Res 2011 Mar 5;21(3):487-93. Epub 2011 Jan 5.

Department of Computational Biology, Max Planck Institute for Molecular Genetics, Berlin D-14195, Germany.

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http://dx.doi.org/10.1101/gr.113985.110DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3044862PMC
March 2011

Targetfinder.org: a resource for systematic discovery of transcription factor target genes.

Nucleic Acids Res 2010 Jul 11;38(Web Server issue):W233-8. Epub 2010 May 11.

Max Planck Institute of Molecular Genetics, Ihnestrasse 73, D-14195 Berlin, Germany.

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http://dx.doi.org/10.1093/nar/gkq374DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2896086PMC
July 2010

TransFind--predicting transcriptional regulators for gene sets.

Nucleic Acids Res 2010 Jul 28;38(Web Server issue):W275-80. Epub 2010 May 28.

Max Planck Institute for Molecular Genetics, Ihnestrasse 73, D-14195 Berlin, Germany.

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http://dx.doi.org/10.1093/nar/gkq438DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2896106PMC
July 2010

Methylation and deamination of CpGs generate p53-binding sites on a genomic scale.

Trends Genet 2009 Feb 26;25(2):63-6. Epub 2008 Dec 26.

Department of Computational Molecular Biology, Max-Planck-Institute for Molecular Genetics, Ihnestrasse 73, D-14195 Berlin, Germany.

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http://dx.doi.org/10.1016/j.tig.2008.11.005DOI Listing
February 2009

Transcriptional autoregulatory loops are highly conserved in vertebrate evolution.

PLoS One 2008 Sep 15;3(9):e3210. Epub 2008 Sep 15.

Max Planck Institute for Molecular Genetics, Berlin, Germany.

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http://journals.plos.org/plosone/article?id=10.1371/journal.pone.0003210PLOS
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2527657PMC
September 2008

Regulatory elements of marine cyanobacteria.

Genome Inform 2007 ;18:1-11

Max Planck Institute for Molecular Genetics, Ihnestrasse 73, D-14195 Berlin, Germany.

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August 2008

Promoter analysis of Mammalian clock controlled genes.

Genome Inform 2007 ;18:65-74

Institute for Theoretical Biology, Humboldt University, Invalidenstrasse 43, D-10115 Berlin, Germany.

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August 2008

Measuring similarities between transcription factor binding sites.

BMC Bioinformatics 2005 Sep 28;6:237. Epub 2005 Sep 28.

Institute for Theoretical Biology, Humboldt University, Invalidenstrasse 43, D-10115 Berlin, Germany.

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http://dx.doi.org/10.1186/1471-2105-6-237DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC1261160PMC
September 2005

Inferring combinatorial regulation of transcription in silico.

Nucleic Acids Res 2005 12;33(1):272-9. Epub 2005 Jan 12.

Humboldt University, Institute for Theoretical Biology Invalidenstrasse 43, 10115 Berlin, Germany.

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http://dx.doi.org/10.1093/nar/gki167DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC546154PMC
February 2005

HuSiDa--the human siRNA database: an open-access database for published functional siRNA sequences and technical details of efficient transfer into recipient cells.

Nucleic Acids Res 2005 Jan;33(Database issue):D108-11

Department of Pediatrics, Laboratory for Molecular Biology, Institute of Pathology, Charité, Universitätsmedizin-Berlin, Germany.

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http://dx.doi.org/10.1093/nar/gki131DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC540085PMC
January 2005

SeqVISTA: a new module of integrated computational tools for studying transcriptional regulation.

Nucleic Acids Res 2004 Jul;32(Web Server issue):W235-41

Bioinformatics Program, Boston University, 44 Cummington Street, Boston, MA 02215, USA.

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http://dx.doi.org/10.1093/nar/gkh483DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC441621PMC
July 2004

HOMGL-comparing genelists across species and with different accession numbers.

Bioinformatics 2004 Jan;20(1):125-6

Institute for Theoretical Biology, Humboldt University Berlin, Invalidenstrasse 43, Berlin, D-10115, Germany.

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http://dx.doi.org/10.1093/bioinformatics/btg379DOI Listing
January 2004