Publications by authors named "Sylvan Baca"

16Publications

Author Correction: Detection of renal cell carcinoma using plasma and urine cell-free DNA methylomes.

Authors:
Pier Vitale Nuzzo Jacob E Berchuck Keegan Korthauer Sandor Spisak Amin H Nassar Sarah Abou Alaiwi Ankur Chakravarthy Shu Yi Shen Ziad Bakouny Francesco Boccardo John Steinharter Gabrielle Bouchard Catherine R Curran Wenting Pan Sylvan C Baca Ji-Heui Seo Gwo-Shu Mary Lee M Dror Michaelson Steven L Chang Sushrut S Waikar Guru Sonpavde Rafael A Irizarry Mark Pomerantz Daniel D De Carvalho Toni K Choueiri Matthew L Freedman

Nat Med 2020 Oct;26(10):1663

Department of Medical Oncology, The Lank Center for Genitourinary Oncology, Dana-Farber Cancer Institute, Harvard Medical School, Boston, MA, USA.

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October 2020

Prostate cancer reactivates developmental epigenomic programs during metastatic progression.

Authors:
Mark M Pomerantz Xintao Qiu Yanyun Zhu David Y Takeda Wenting Pan Sylvan C Baca Alexander Gusev Keegan D Korthauer Tesa M Severson Gavin Ha Srinivas R Viswanathan Ji-Heui Seo Holly M Nguyen Baohui Zhang Bogdan Pasaniuc Claudia Giambartolomei Sarah A Alaiwi Connor A Bell Edward P O'Connor Matthew S Chabot David R Stillman Rosina Lis Alba Font-Tello Lewyn Li Paloma Cejas Andries M Bergman Joyce Sanders Henk G van der Poel Simon A Gayther Kate Lawrenson Marcos A S Fonseca Jessica Reddy Rosario I Corona Gleb Martovetsky Brian Egan Toni Choueiri Leigh Ellis Isla P Garraway Gwo-Shu Mary Lee Eva Corey Henry W Long Wilbert Zwart Matthew L Freedman

Nat Genet 2020 08 20;52(8):790-799. Epub 2020 Jul 20.

Department of Medical Oncology, Dana-Farber Cancer Institute, Harvard Medical School, Boston, MA, USA.

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August 2020

Detection of renal cell carcinoma using plasma and urine cell-free DNA methylomes.

Authors:
Pier Vitale Nuzzo Jacob E Berchuck Keegan Korthauer Sandor Spisak Amin H Nassar Sarah Abou Alaiwi Ankur Chakravarthy Shu Yi Shen Ziad Bakouny Francesco Boccardo John Steinharter Gabrielle Bouchard Catherine R Curran Wenting Pan Sylvan C Baca Ji-Heui Seo Gwo-Shu Mary Lee M Dror Michaelson Steven L Chang Sushrut S Waikar Guru Sonpavde Rafael A Irizarry Mark Pomerantz Daniel D De Carvalho Toni K Choueiri Matthew L Freedman

Nat Med 2020 07 22;26(7):1041-1043. Epub 2020 Jun 22.

Department of Medical Oncology, The Lank Center for Genitourinary Oncology, Dana-Farber Cancer Institute, Harvard Medical School, Boston, MA, USA.

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July 2020

Mammalian SWI/SNF Complex Genomic Alterations and Immune Checkpoint Blockade in Solid Tumors.

Authors:
Sarah Abou Alaiwi Amin H Nassar Wanling Xie Ziad Bakouny Jacob E Berchuck David A Braun Sylvan C Baca Pier Vitale Nuzzo Ronan Flippot Tarek H Mouhieddine Liam F Spurr Yvonne Y Li Taiwen Li Abdallah Flaifel John A Steinharter Claire A Margolis Natalie I Vokes Heng Du Sachet A Shukla Andrew D Cherniack Guru Sonpavde Robert I Haddad Mark M Awad Marios Giannakis F Stephen Hodi X Shirley Liu Sabina Signoretti Cigall Kadoch Matthew L Freedman David J Kwiatkowski Eliezer M Van Allen Toni K Choueiri

Cancer Immunol Res 2020 08 22;8(8):1075-1084. Epub 2020 Apr 22.

Lank Center for Genitourinary Oncology, Dana-Farber Cancer Institute, Boston, Massachusetts.

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August 2020

CDK7 Inhibition Suppresses Castration-Resistant Prostate Cancer through MED1 Inactivation.

Authors:
Reyaz Ur Rasool Ramakrishnan Natesan Qu Deng Shweta Aras Priti Lal Samuel Sander Effron Erick Mitchell-Velasquez Jessica M Posimo Shannon Carskadon Sylvan C Baca Mark M Pomerantz Javed Siddiqui Lauren E Schwartz Daniel J Lee Nallasivam Palanisamy Goutham Narla Robert B Den Matthew L Freedman Donita C Brady Irfan A Asangani

Cancer Discov 2019 11 29;9(11):1538-1555. Epub 2019 Aug 29.

Department of Cancer Biology, Perelman School of Medicine, University of Pennsylvania, Philadelphia, Pennsylvania.

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November 2019

Erratum to: Unraveling the clonal hierarchy of somatic genomic aberrations.

Authors:
Davide Prandi Sylvan C Baca Alessandro Romanel Christopher E Barbieri Juan-Miguel Mosquera Jacqueline Fontugne Himisha Beltran Andrea Sboner Levi A Garraway Mark A Rubin Francesca Demichelis

Genome Biol 2017 05 2;18(1):80. Epub 2017 May 2.

Centre for Integrative Biology, University of Trento, Povo Trento, 38123, Italy.

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May 2017

Qualifiers of atypia in the cytologic diagnosis of thyroid nodules are associated with different Afirma gene expression classifier results and clinical outcomes.

Authors:
Sylvan C Baca Kristine S Wong Kyle C Strickland Howard T Heller Matthew I Kim Justine A Barletta Edmund S Cibas Jeffrey F Krane Ellen Marqusee Trevor E Angell

Cancer Cytopathol 2017 05 2;125(5):313-322. Epub 2017 Feb 2.

Thyroid Section, Division of Endocrinology, Hypertension, and Diabetes, The Brigham and Women's Hospital and Harvard Medical School, Boston, Massachusetts.

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May 2017

Complementary genomic approaches highlight the PI3K/mTOR pathway as a common vulnerability in osteosarcoma.

Authors:
Jennifer A Perry Adam Kiezun Peter Tonzi Eliezer M Van Allen Scott L Carter Sylvan C Baca Glenn S Cowley Ami S Bhatt Esther Rheinbay Chandra Sekhar Pedamallu Elena Helman Amaro Taylor-Weiner Aaron McKenna David S DeLuca Michael S Lawrence Lauren Ambrogio Carrie Sougnez Andrey Sivachenko Loren D Walensky Nikhil Wagle Jaume Mora Carmen de Torres Cinzia Lavarino Simone Dos Santos Aguiar Jose Andres Yunes Silvia Regina Brandalise Gabriela Elisa Mercado-Celis Jorge Melendez-Zajgla Rocío Cárdenas-Cardós Liliana Velasco-Hidalgo Charles W M Roberts Levi A Garraway Carlos Rodriguez-Galindo Stacey B Gabriel Eric S Lander Todd R Golub Stuart H Orkin Gad Getz Katherine A Janeway

Proc Natl Acad Sci U S A 2014 Dec 15;111(51):E5564-73. Epub 2014 Dec 15.

Department of Pediatric Oncology, Dana-Farber/Boston Children's Cancer and Blood Disorders Center, Boston, MA 02215; Department of Pediatrics,

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December 2014

Prostate cancer. Ubiquitylome analysis identifies dysregulation of effector substrates in SPOP-mutant prostate cancer.

Authors:
Jean-Philippe P Theurillat Namrata D Udeshi Wesley J Errington Tanya Svinkina Sylvan C Baca Marius Pop Peter J Wild Mirjam Blattner Anna C Groner Mark A Rubin Holger Moch Gilbert G Prive Steven A Carr Levi A Garraway

Science 2014 Oct 2;346(6205):85-89. Epub 2014 Oct 2.

The Broad Institute of Harvard and MIT, Cambridge, MA 02142, USA.

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October 2014

Unraveling the clonal hierarchy of somatic genomic aberrations.

Authors:
Davide Prandi Sylvan C Baca Alessandro Romanel Christopher E Barbieri Juan-Miguel Mosquera Jacqueline Fontugne Himisha Beltran Andrea Sboner Levi A Garraway Mark A Rubin Francesca Demichelis

Genome Biol 2014 Aug 26;15(8):439. Epub 2014 Aug 26.

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August 2014

Mutational heterogeneity in cancer and the search for new cancer-associated genes.

Authors:
Michael S Lawrence Petar Stojanov Paz Polak Gregory V Kryukov Kristian Cibulskis Andrey Sivachenko Scott L Carter Chip Stewart Craig H Mermel Steven A Roberts Adam Kiezun Peter S Hammerman Aaron McKenna Yotam Drier Lihua Zou Alex H Ramos Trevor J Pugh Nicolas Stransky Elena Helman Jaegil Kim Carrie Sougnez Lauren Ambrogio Elizabeth Nickerson Erica Shefler Maria L Cortés Daniel Auclair Gordon Saksena Douglas Voet Michael Noble Daniel DiCara Pei Lin Lee Lichtenstein David I Heiman Timothy Fennell Marcin Imielinski Bryan Hernandez Eran Hodis Sylvan Baca Austin M Dulak Jens Lohr Dan-Avi Landau Catherine J Wu Jorge Melendez-Zajgla Alfredo Hidalgo-Miranda Amnon Koren Steven A McCarroll Jaume Mora Brian Crompton Robert Onofrio Melissa Parkin Wendy Winckler Kristin Ardlie Stacey B Gabriel Charles W M Roberts Jaclyn A Biegel Kimberly Stegmaier Adam J Bass Levi A Garraway Matthew Meyerson Todd R Golub Dmitry A Gordenin Shamil Sunyaev Eric S Lander Gad Getz

Nature 2013 Jul 16;499(7457):214-218. Epub 2013 Jun 16.

The Broad Institute of MIT and Harvard, Cambridge, MA, 02141, USA.

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July 2013

Punctuated evolution of prostate cancer genomes.

Authors:
Sylvan C Baca Davide Prandi Michael S Lawrence Juan Miguel Mosquera Alessandro Romanel Yotam Drier Kyung Park Naoki Kitabayashi Theresa Y MacDonald Mahmoud Ghandi Eliezer Van Allen Gregory V Kryukov Andrea Sboner Jean-Philippe Theurillat T David Soong Elizabeth Nickerson Daniel Auclair Ashutosh Tewari Himisha Beltran Robert C Onofrio Gunther Boysen Candace Guiducci Christopher E Barbieri Kristian Cibulskis Andrey Sivachenko Scott L Carter Gordon Saksena Douglas Voet Alex H Ramos Wendy Winckler Michelle Cipicchio Kristin Ardlie Philip W Kantoff Michael F Berger Stacey B Gabriel Todd R Golub Matthew Meyerson Eric S Lander Olivier Elemento Gad Getz Francesca Demichelis Mark A Rubin Levi A Garraway

Cell 2013 Apr;153(3):666-77

Harvard Medical School, Boston, MA 02115, USA.

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April 2013

Gastrointestinal adenocarcinomas of the esophagus, stomach, and colon exhibit distinct patterns of genome instability and oncogenesis.

Authors:
Austin M Dulak Steven E Schumacher Jasper van Lieshout Yu Imamura Cameron Fox Byoungyong Shim Alex H Ramos Gordon Saksena Sylvan C Baca Jose Baselga Josep Tabernero Jordi Barretina Peter C Enzinger Giovanni Corso Franco Roviello Lin Lin Santhoshi Bandla James D Luketich Arjun Pennathur Matthew Meyerson Shuji Ogino Ramesh A Shivdasani David G Beer Tony E Godfrey Rameen Beroukhim Adam J Bass

Cancer Res 2012 Sep 2;72(17):4383-93. Epub 2012 Jul 2.

Departments of Medical Oncology, Cancer Biology and Center for Cancer Genome Discovery, Dana-Farber Cancer Institute, Boston, MA 02215, USA.

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September 2012

The genomic landscape of prostate cancer.

Authors:
Sylvan C Baca Levi A Garraway

Front Endocrinol (Lausanne) 2012 16;3:69. Epub 2012 May 16.

Harvard Medical School, Boston, MA, USA.

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July 2012

Exome sequencing identifies recurrent SPOP, FOXA1 and MED12 mutations in prostate cancer.

Authors:
Christopher E Barbieri Sylvan C Baca Michael S Lawrence Francesca Demichelis Mirjam Blattner Jean-Philippe Theurillat Thomas A White Petar Stojanov Eliezer Van Allen Nicolas Stransky Elizabeth Nickerson Sung-Suk Chae Gunther Boysen Daniel Auclair Robert C Onofrio Kyung Park Naoki Kitabayashi Theresa Y MacDonald Karen Sheikh Terry Vuong Candace Guiducci Kristian Cibulskis Andrey Sivachenko Scott L Carter Gordon Saksena Douglas Voet Wasay M Hussain Alex H Ramos Wendy Winckler Michelle C Redman Kristin Ardlie Ashutosh K Tewari Juan Miguel Mosquera Niels Rupp Peter J Wild Holger Moch Colm Morrissey Peter S Nelson Philip W Kantoff Stacey B Gabriel Todd R Golub Matthew Meyerson Eric S Lander Gad Getz Mark A Rubin Levi A Garraway

Nat Genet 2012 May 20;44(6):685-9. Epub 2012 May 20.

Department of Pathology and Laboratory Medicine, Weill Cornell Medical College, New York, New York, USA.

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May 2012

Determining membrane capacitance by dynamic control of droplet interface bilayer area.

Authors:
Linda C M Gross Andrew J Heron Sylvan C Baca Mark I Wallace

Langmuir 2011 Dec 2;27(23):14335-42. Epub 2011 Nov 2.

Department of Chemistry, University of Oxford, Chemistry Research Laboratory, Mansfield Road, Oxford OX1 3TA.

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December 2011