Sylvain V Costes

Sylvain V Costes

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Sylvain V Costes

Sylvain V Costes

Publications by authors named "Sylvain V Costes"

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FAIRness and Usability for Open-access Omics Data Systems.

AMIA Annu Symp Proc 2018 5;2018:232-241. Epub 2018 Dec 5.

NASA.

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http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6371294PMC
September 2019

Dose, LET and Strain Dependence of Radiation-Induced 53BP1 Foci in 15 Mouse Strains Introducing Novel DNA Damage Metrics.

Radiat Res 2019 07 13;192(1):1-12. Epub 2019 May 13.

a Biological Systems and Engineering Division, Lawrence Berkeley National Laboratory, Berkeley, California 94720.

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http://dx.doi.org/10.1667/RR15338.1DOI Listing
July 2019

GeneLab: Omics database for spaceflight experiments.

Bioinformatics 2019 May;35(10):1753-1759

Space Biosciences Division, NASA Ames Research Center, Moffett Field, CA, USA.

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https://academic.oup.com/bioinformatics/advance-article/doi/
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http://dx.doi.org/10.1093/bioinformatics/bty884DOI Listing
May 2019

A microRNA signature and TGF-β1 response were identified as the key master regulators for spaceflight response.

PLoS One 2018 25;13(7):e0199621. Epub 2018 Jul 25.

NASA Ames Research Center, Space Biosciences Division, Moffett Field, California, United States of America.

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http://journals.plos.org/plosone/article?id=10.1371/journal.pone.0199621PLOS
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6059388PMC
January 2019

Persistence of Gamma-H2AX Foci in Bronchial Cells Correlates with Susceptibility to Radiation Associated Lung Cancer in Mice.

Radiat Res 2019 01 6;191(1):67-75. Epub 2018 Nov 6.

a   Department of Environmental and Radiological Health Sciences, Colorado State University, Fort Collins, Colorado.

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http://www.rrjournal.org/doi/10.1667/RR14979.1
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http://dx.doi.org/10.1667/RR14979.1DOI Listing
January 2019

Central Nervous System Responses to Simulated Galactic Cosmic Rays.

Int J Mol Sci 2018 Nov 20;19(11). Epub 2018 Nov 20.

Space Biosciences Division, NASA Ames Research Center, Moffett Field, CA 94035, USA.

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http://dx.doi.org/10.3390/ijms19113669DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6275046PMC
November 2018

Comparing Photon and Charged Particle Therapy Using DNA Damage Biomarkers.

Int J Part Ther 2018 21;5(1):15-24. Epub 2018 Sep 21.

NASA Ames Research Center, Moffett Field, CA, USA.

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http://dx.doi.org/10.14338/IJPT-18-00018.1DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6871597PMC
September 2018

NASA GeneLab Project: Bridging Space Radiation Omics with Ground Studies.

Radiat Res 2018 06 13;189(6):553-559. Epub 2018 Apr 13.

d   NASA Ames Research Center, Space Biosciences Division, Moffett Field, California 94035.

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http://dx.doi.org/10.1667/RR15062.1DOI Listing
June 2018

Drosophila Histone Demethylase KDM4A Has Enzymatic and Non-enzymatic Roles in Controlling Heterochromatin Integrity.

Dev Cell 2017 07;42(2):156-169.e5

Biological Systems and Engineering, Lawrence Berkeley National Laboratory, Berkeley, CA 94720, USA; Department of Molecular and Cellular Biology, University of California, Berkeley, CA 94720, USA.

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http://dx.doi.org/10.1016/j.devcel.2017.06.014DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5572651PMC
July 2017

The composition and organization of Drosophila heterochromatin are heterogeneous and dynamic.

Elife 2016 08 11;5. Epub 2016 Aug 11.

Division of Biological Systems and Engineering, Lawrence Berkeley National Laboratory, Berkeley, United States.

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http://dx.doi.org/10.7554/eLife.16096DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4981497PMC
August 2016

Genetic Background Modulates lncRNA-Coordinated Tissue Response to Low Dose Ionizing Radiation.

Int J Genomics 2015 23;2015:461038. Epub 2015 Feb 23.

Life Sciences Division, Lawrence Berkeley National Laboratory, 1 Cyclotron Road MS977, Berkeley, CA 94720, USA.

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http://dx.doi.org/10.1155/2015/461038DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4353441PMC
March 2015

Densely ionizing radiation acts via the microenvironment to promote aggressive Trp53-null mammary carcinomas.

Cancer Res 2014 Dec 10;74(23):7137-48. Epub 2014 Oct 10.

Department of Radiation Oncology, New York University School of Medicine, New York, New York.

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http://dx.doi.org/10.1158/0008-5472.CAN-14-1212DOI Listing
December 2014

Combinatorial DNA damage pairing model based on X-ray-induced foci predicts the dose and LET dependence of cell death in human breast cells.

Radiat Res 2014 Sep 30;182(3):273-81. Epub 2014 Jul 30.

a  Massachusetts Institute of Technology, Cambridge, Massachusetts 02139.

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http://dx.doi.org/10.1667/RR13792.1DOI Listing
September 2014

Nuclear dynamics of radiation-induced foci in euchromatin and heterochromatin.

Mutat Res 2013 Oct 16;750(1-2):56-66. Epub 2013 Aug 16.

University of Southern California, 1050 Childs Way, Los Angeles, CA, United States. Electronic address:

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http://dx.doi.org/10.1016/j.mrfmmm.2013.08.001DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3838906PMC
October 2013

The cell cycle timing of centromeric chromatin assembly in Drosophila meiosis is distinct from mitosis yet requires CAL1 and CENP-C.

PLoS Biol 2012 27;10(12):e1001460. Epub 2012 Dec 27.

Department of Genome Dynamics, Life Sciences Division, Lawrence Berkeley National Laboratory, Berkeley, California, USA.

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http://dx.doi.org/10.1371/journal.pbio.1001460DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3531500PMC
May 2013

Rapid and automated multidimensional fluorescence microscopy profiling of 3D human breast cultures.

Integr Biol (Camb) 2013 Apr 13;5(4):681-91. Epub 2013 Feb 13.

Life Sciences Division, Lawrence Berkeley National Laboratory, Berkeley, CA 94720, USA.

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http://dx.doi.org/10.1039/c3ib20275eDOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3641787PMC
April 2013

Evidence for formation of DNA repair centers and dose-response nonlinearity in human cells.

Proc Natl Acad Sci U S A 2012 Jan 19;109(2):443-8. Epub 2011 Dec 19.

Institute of Radiation Protection, German Research Center for Environmental Health (GmbH), Ingolstädter Landstrasse 1, 85764 Neuherberg, Germany.

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http://dx.doi.org/10.1073/pnas.1117849108DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3258602PMC
January 2012

Interplay between BRCA1 and RHAMM regulates epithelial apicobasal polarization and may influence risk of breast cancer.

Authors:
Christopher A Maxwell Javier Benítez Laia Gómez-Baldó Ana Osorio Núria Bonifaci Ricardo Fernández-Ramires Sylvain V Costes Elisabet Guinó Helen Chen Gareth J R Evans Pooja Mohan Isabel Català Anna Petit Helena Aguilar Alberto Villanueva Alvaro Aytes Jordi Serra-Musach Gad Rennert Flavio Lejbkowicz Paolo Peterlongo Siranoush Manoukian Bernard Peissel Carla B Ripamonti Bernardo Bonanni Alessandra Viel Anna Allavena Loris Bernard Paolo Radice Eitan Friedman Bella Kaufman Yael Laitman Maya Dubrovsky Roni Milgrom Anna Jakubowska Cezary Cybulski Bohdan Gorski Katarzyna Jaworska Katarzyna Durda Grzegorz Sukiennicki Jan Lubiński Yin Yao Shugart Susan M Domchek Richard Letrero Barbara L Weber Frans B L Hogervorst Matti A Rookus J Margriet Collee Peter Devilee Marjolijn J Ligtenberg Rob B van der Luijt Cora M Aalfs Quinten Waisfisz Juul Wijnen Cornelis E P van Roozendaal Douglas F Easton Susan Peock Margaret Cook Clare Oliver Debra Frost Patricia Harrington D Gareth Evans Fiona Lalloo Rosalind Eeles Louise Izatt Carol Chu Diana Eccles Fiona Douglas Carole Brewer Heli Nevanlinna Tuomas Heikkinen Fergus J Couch Noralane M Lindor Xianshu Wang Andrew K Godwin Maria A Caligo Grazia Lombardi Niklas Loman Per Karlsson Hans Ehrencrona Anna von Wachenfeldt Rosa Bjork Barkardottir Ute Hamann Muhammad U Rashid Adriana Lasa Trinidad Caldés Raquel Andrés Michael Schmitt Volker Assmann Kristen Stevens Kenneth Offit João Curado Hagen Tilgner Roderic Guigó Gemma Aiza Joan Brunet Joan Castellsagué Griselda Martrat Ander Urruticoechea Ignacio Blanco Laima Tihomirova David E Goldgar Saundra Buys Esther M John Alexander Miron Melissa Southey Mary B Daly Rita K Schmutzler Barbara Wappenschmidt Alfons Meindl Norbert Arnold Helmut Deissler Raymonda Varon-Mateeva Christian Sutter Dieter Niederacher Evgeny Imyamitov Olga M Sinilnikova Dominique Stoppa-Lyonne Sylvie Mazoyer Carole Verny-Pierre Laurent Castera Antoine de Pauw Yves-Jean Bignon Nancy Uhrhammer Jean-Philippe Peyrat Philippe Vennin Sandra Fert Ferrer Marie-Agnès Collonge-Rame Isabelle Mortemousque Amanda B Spurdle Jonathan Beesley Xiaoqing Chen Sue Healey Mary Helen Barcellos-Hoff Marc Vidal Stephen B Gruber Conxi Lázaro Gabriel Capellá Lesley McGuffog Katherine L Nathanson Antonis C Antoniou Georgia Chenevix-Trench Markus C Fleisch Víctor Moreno Miguel Angel Pujana

PLoS Biol 2011 Nov 15;9(11):e1001199. Epub 2011 Nov 15.

Translational Research Laboratory, Catalan Institute of Oncology, Bellvitge Biomedical Research Institute-IDIBELL, L'Hospitalet, Catalonia, Spain.

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http://dx.doi.org/10.1371/journal.pbio.1001199DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3217025PMC
November 2011

Persistence of γ-H2AX and 53BP1 foci in proliferating and non-proliferating human mammary epithelial cells after exposure to γ-rays or iron ions.

Int J Radiat Biol 2011 Jul 27;87(7):696-710. Epub 2011 Jan 27.

Lawrence Berkeley National Laboratory, Life Sciences Division, Department of Cancer and DNA Damage Responses, Berkeley, CA 94720, USA.

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http://dx.doi.org/10.3109/09553002.2010.549535DOI Listing
July 2011

Phenotypic transition maps of 3D breast acini obtained by imaging-guided agent-based modeling.

Integr Biol (Camb) 2011 Apr 4;3(4):408-21. Epub 2011 Mar 4.

Life Sciences Division, Lawrence Berkeley National Laboratory, Berkeley, CA 94720, USA.

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http://dx.doi.org/10.1039/c0ib00092bDOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4009383PMC
April 2011

Mesenchymal cells stimulate capillary morphogenesis via distinct proteolytic mechanisms.

Exp Cell Res 2010 Mar 11;316(5):813-25. Epub 2010 Jan 11.

Department of Biomedical Engineering, University of California, Irvine, Irvine, CA 92697, USA.

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http://dx.doi.org/10.1016/j.yexcr.2010.01.013DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2845480PMC
March 2010

Stochastic properties of radiation-induced DSB: DSB distributions in large scale chromatin loops, the HPRT gene and within the visible volumes of DNA repair foci.

Int J Radiat Biol 2008 Nov;84(11):916-29

The Universities Space Research Association, Division of Space Life Sciences, Houston, Texas, USA.

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http://dx.doi.org/10.1080/09553000802499212DOI Listing
November 2008

Image-based modeling reveals dynamic redistribution of DNA damage into nuclear sub-domains.

PLoS Comput Biol 2007 Aug;3(8):e155

Life Sciences Division, Lawrence Berkeley National Laboratory, Berkeley, California, United States of America.

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http://dx.doi.org/10.1371/journal.pcbi.0030155DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC1937017PMC
August 2007

Intensity-based signal separation algorithm for accurate quantification of clustered centrosomes in tissue sections.

Microsc Res Tech 2006 Dec;69(12):964-72

Life Sciences Division, Lawrence Berkeley National Laboratory, Berkeley, California 94720, USA.

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http://dx.doi.org/10.1002/jemt.20372DOI Listing
December 2006

A systems biology approach to multicellular and multi-generational radiation responses.

Mutat Res 2006 May 18;597(1-2):32-8. Epub 2006 Jan 18.

Life Sciences Division, Lawrence Berkeley National Laboratory, 1 Cyclotron Road, Building 74-355, Berkeley, CA 94705, USA.

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http://dx.doi.org/10.1016/j.mrfmmm.2005.09.008DOI Listing
May 2006

Imaging features that discriminate between foci induced by high- and low-LET radiation in human fibroblasts.

Radiat Res 2006 May;165(5):505-15

Life Sciences Division, Lawrence Berkeley National Laboratory, Berkeley, California 94720, USA.

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http://dx.doi.org/10.1667/RR3538.1DOI Listing
May 2006

Kinetic and molecular analysis of nuclear export factor CRM1 association with its cargo in vivo.

Mol Cell Biol 2005 Jan;25(2):728-39

Rega Institute for Medical Research, Katholieke Universiteit Leuven, Minderbroedersstraat 10, 3000 Leuven, Belgium.

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http://dx.doi.org/10.1128/MCB.25.2.728-739.2005DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC543413PMC
January 2005

In vivo HIV-1 Rev multimerization in the nucleolus and cytoplasm identified by fluorescence resonance energy transfer.

J Biol Chem 2004 Nov 3;279(48):50167-75. Epub 2004 Aug 3.

Human Retrovirus Section, Basic Research Laboratory and Image Analysis Laboratory, Science Application International Corporation, NCI-Frederick, Frederick, Maryland 21702-1201, USA.

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http://dx.doi.org/10.1074/jbc.M407713200DOI Listing
November 2004

Human CD8+ T cells store RANTES in a unique secretory compartment and release it rapidly after TcR stimulation.

Immunity 2004 Feb;20(2):219-30

Experimental Immunology Branch, National Cancer Institute, National Institutes of Health, Bethesda, MD 20892, USA.

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http://dx.doi.org/10.1016/s1074-7613(04)00027-5DOI Listing
February 2004