Swapan K Nath

Swapan K Nath

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Swapan K Nath

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Identification of Proteins Interacting with Single Nucleotide Polymorphisms (SNPs) by DNA Pull-Down Assay.

Methods Mol Biol 2019 ;1855:355-362

Arthritis and Clinical Immunology Program, Oklahoma Medical Research Foundation, Oklahoma City, OK, USA.

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http://link.springer.com/10.1007/978-1-4939-8793-1_30
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http://dx.doi.org/10.1007/978-1-4939-8793-1_30DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6613650PMC
June 2019

A plausibly causal functional lupus-associated risk variant in the STAT1-STAT4 locus.

Hum Mol Genet 2018 Jul;27(13):2392-2404

Center for Autoimmune Genomics and Etiology, Cincinnati Children's Hospital Medical Center, Cincinnati, OH 45229, USA.

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http://dx.doi.org/10.1093/hmg/ddy140DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6005081PMC
July 2018

Genetic variants in systemic lupus erythematosus susceptibility loci, XKR6 and GLT1D1 are associated with childhood-onset SLE in a Korean cohort.

Sci Rep 2018 Jul 2;8(1):9962. Epub 2018 Jul 2.

Department of Rheumatology, Hanyang University Hospital for Rheumatic Diseases, Seoul, Republic of Korea.

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http://dx.doi.org/10.1038/s41598-018-28128-zDOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6028392PMC
July 2018

Interleukin-17F and interleukin-6 gene polymorphisms in Asian Indian patients with Takayasu arteritis.

Hum Immunol 2017 Jul - Aug;78(7-8):515-520. Epub 2017 Apr 22.

Arthritis & Clinical Immunology Program, Oklahoma Medical Research Foundation, 825 NE 13th St., Oklahoma City, OK 73104, United States. Electronic address:

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http://dx.doi.org/10.1016/j.humimm.2017.04.008DOI Listing
April 2018

Transancestral mapping and genetic load in systemic lupus erythematosus.

Authors:
Carl D Langefeld Hannah C Ainsworth Deborah S Cunninghame Graham Jennifer A Kelly Mary E Comeau Miranda C Marion Timothy D Howard Paula S Ramos Jennifer A Croker David L Morris Johanna K Sandling Jonas Carlsson Almlöf Eduardo M Acevedo-Vásquez Graciela S Alarcón Alejandra M Babini Vicente Baca Anders A Bengtsson Guillermo A Berbotto Marc Bijl Elizabeth E Brown Hermine I Brunner Mario H Cardiel Luis Catoggio Ricard Cervera Jorge M Cucho-Venegas Solbritt Rantapää Dahlqvist Sandra D'Alfonso Berta Martins Da Silva Iñigo de la Rúa Figueroa Andrea Doria Jeffrey C Edberg Emőke Endreffy Jorge A Esquivel-Valerio Paul R Fortin Barry I Freedman Johan Frostegård Mercedes A García Ignacio García de la Torre Gary S Gilkeson Dafna D Gladman Iva Gunnarsson Joel M Guthridge Jennifer L Huggins Judith A James Cees G M Kallenberg Diane L Kamen David R Karp Kenneth M Kaufman Leah C Kottyan László Kovács Helle Laustrup Bernard R Lauwerys Quan-Zhen Li Marco A Maradiaga-Ceceña Javier Martín Joseph M McCune David R McWilliams Joan T Merrill Pedro Miranda José F Moctezuma Swapan K Nath Timothy B Niewold Lorena Orozco Norberto Ortego-Centeno Michelle Petri Christian A Pineau Bernardo A Pons-Estel Janet Pope Prithvi Raj Rosalind Ramsey-Goldman John D Reveille Laurie P Russell José M Sabio Carlos A Aguilar-Salinas Hugo R Scherbarth Raffaella Scorza Michael F Seldin Christopher Sjöwall Elisabet Svenungsson Susan D Thompson Sergio M A Toloza Lennart Truedsson Teresa Tusié-Luna Carlos Vasconcelos Luis M Vilá Daniel J Wallace Michael H Weisman Joan E Wither Tushar Bhangale Jorge R Oksenberg John D Rioux Peter K Gregersen Ann-Christine Syvänen Lars Rönnblom Lindsey A Criswell Chaim O Jacob Kathy L Sivils Betty P Tsao Laura E Schanberg Timothy W Behrens Earl D Silverman Marta E Alarcón-Riquelme Robert P Kimberly John B Harley Edward K Wakeland Robert R Graham Patrick M Gaffney Timothy J Vyse

Nat Commun 2017 07 17;8:16021. Epub 2017 Jul 17.

Divisions of Genetics and Molecular Medicine and Immunology, Infection and Inflammatory Diseases, King's College London, Guy's Hospital, London SE1 9RT, UK.

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http://dx.doi.org/10.1038/ncomms16021DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5520018PMC
July 2017

Evaluation of 10 SLE susceptibility loci in Asian populations, which were initially identified in European populations.

Sci Rep 2017 01 27;7:41399. Epub 2017 Jan 27.

Renal Division, Peking University First Hospital, Peking University Institute of Nephrology, Key Laboratory of Renal Disease, Ministry of Health of China, Key Laboratory of Chronic Kidney Disease Prevention and Treatment (Peking University), Ministry of Education, Beijing, People's Republic of China.

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http://dx.doi.org/10.1038/srep41399DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5269754PMC
January 2017

Novel identified associations of RGS1 and RASGRP1 variants in IgA Nephropathy.

Sci Rep 2016 11 2;6:35781. Epub 2016 Nov 2.

Renal Division, Peking University First Hospital; Peking University Institute of Nephrology; Key Laboratory of Renal Disease, Ministry of Health of China; and Key Laboratory of Chronic Kidney Disease Prevention and Treatment (Peking University), Ministry of Education; Beijing, 100034, People's Republic of China.

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http://dx.doi.org/10.1038/srep35781DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5090199PMC
November 2016

GDF15(MIC1) H6D Polymorphism Does Not Influence Cardiovascular Disease in a Latin American Population with Rheumatoid Arthritis.

J Immunol Res 2015 18;2015:270763. Epub 2015 May 18.

Center for Autoimmune Diseases Research (CREA), School of Medicine and Health Sciences, Universidad del Rosario, Carrera 24 No. 63C-69, Bogotá, Colombia.

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http://dx.doi.org/10.1155/2015/270763DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4451155PMC
March 2016

Association of variants in CCR6 with susceptibility to lupus nephritis in Chinese.

Arthritis Rheumatol 2015 Nov;67(11):3091-3

Peking University First Hospital, Peking University Institute of Nephrology, Key Laboratory of Renal Disease, Ministry of Health and Key Laboratory of Chronic Kidney Disease, Prevention and Treatment, Ministry of Education, Beijing, China.

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http://doi.wiley.com/10.1002/art.39268
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http://dx.doi.org/10.1002/art.39268DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5385840PMC
November 2015

An HLA-C amino-acid variant in addition to HLA-B*27 confers risk for ankylosing spondylitis in the Korean population.

Arthritis Res Ther 2015 Nov 27;17:342. Epub 2015 Nov 27.

Department of Rheumatology, Hanyang University Hospital for Rheumatic Diseases, 222-1, Wangsimni-ro, Seongdong-gu, Seoul, 04763, Republic of Korea.

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http://dx.doi.org/10.1186/s13075-015-0855-3DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4662802PMC
November 2015

The IRF5-TNPO3 association with systemic lupus erythematosus has two components that other autoimmune disorders variably share.

Hum Mol Genet 2015 Jan 8;24(2):582-96. Epub 2014 Sep 8.

Division of Rheumatology, Center for Autoimmune Genomics and Etiology and US Department of Veterans Affairs Medical Center, Cincinnati, OH, USA.

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http://dx.doi.org/10.1093/hmg/ddu455DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4275071PMC
January 2015

Brief Report: identification of MTMR3 as a novel susceptibility gene for lupus nephritis in northern Han Chinese by shared-gene analysis with IgA nephropathy.

Arthritis Rheumatol 2014 Oct;66(10):2842-8

Peking University First Hospital, Peking University Institute of Nephrology, Key Laboratory of Renal Disease, Ministry of Health of China, and Key Laboratory of Chronic Kidney Disease Prevention and Treatment at Peking University, Ministry of Education of China, Beijing, China.

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http://dx.doi.org/10.1002/art.38749DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4180767PMC
October 2014

Evaluation of SLE Susceptibility Genes in Malaysians.

Autoimmune Dis 2014 18;2014:305436. Epub 2014 Feb 18.

Arthritis and Clinical Immunology Research Program, Oklahoma Medical Research Foundation, 1025 NE 13th Street, Oklahoma City, OK 73104, USA.

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http://downloads.hindawi.com/journals/ad/2014/305436.pdf
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http://www.hindawi.com/journals/ad/2014/305436/
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http://dx.doi.org/10.1155/2014/305436DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3948475PMC
April 2014

Oxidative stress and its biomarkers in systemic lupus erythematosus.

J Biomed Sci 2014 Mar 17;21:23. Epub 2014 Mar 17.

Center for Translational Medicine, Thomas Jefferson University, Philadelphia, PA 19107, USA.

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http://dx.doi.org/10.1186/1423-0127-21-23DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3995422PMC
March 2014

Interaction between glutathione and apoptosis in systemic lupus erythematosus.

Autoimmun Rev 2013 May 29;12(7):741-51. Epub 2012 Dec 29.

Center for Translational Medicine, Thomas Jefferson University, Philadelphia, PA 19107, USA.

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http://dx.doi.org/10.1016/j.autrev.2012.12.007DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3625500PMC
May 2013

Gene network analysis of small molecules with autoimmune disease associated genes predicts a novel strategy for drug efficacy.

Autoimmun Rev 2013 Feb 18;12(4):510-22. Epub 2012 Sep 18.

Arthritis and Clinical Immunology Research Program, Oklahoma Medical Research Foundation, 825 N.E. 13th Street, Oklahoma City, OK 73104, United States.

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http://linkinghub.elsevier.com/retrieve/pii/S156899721200210
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http://dx.doi.org/10.1016/j.autrev.2012.09.001DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3577986PMC
February 2013

Multiple Autoantibodies Display Association with Lymphopenia, Proteinuria, and Cellular Casts in a Large, Ethnically Diverse SLE Patient Cohort.

Autoimmune Dis 2012 4;2012:819634. Epub 2012 Sep 4.

Arthritis and Clinical Immunology, Oklahoma Medical Research Foundation, Oklahoma City, OK 73104, USA ; Department of Medicine and Department of Pathology, University of Oklahoma Health Sciences Center, Oklahoma City, OK 73104, USA.

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http://dx.doi.org/10.1155/2012/819634DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3439936PMC
September 2012

Gene-gene interaction of BLK, TNFSF4, TRAF1, TNFAIP3, and REL in systemic lupus erythematosus.

Arthritis Rheum 2012 Jan;64(1):222-31

Peking University First Hospital, Peking University Institute of Nephrology, and Key Laboratory of Renal Disease, Ministry of Health of China, Beijing, China.

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http://dx.doi.org/10.1002/art.33318DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3994469PMC
January 2012

Evaluation of 19 autoimmune disease-associated loci with rheumatoid arthritis in a Colombian population: evidence for replication and gene-gene interaction.

J Rheumatol 2011 Sep 15;38(9):1866-70. Epub 2011 Jul 15.

Genetic Epidemiology Unit, Arthritis and Immunology Research Program, Oklahoma Medical Research Foundation, 825 NE 13th Street, Oklahoma City, OK 73104, USA.

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http://dx.doi.org/10.3899/jrheum.110199DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3170719PMC
September 2011

Genome-wide association scan of Dupuytren's disease.

J Hand Surg Am 2010 Dec 25;35(12):2039-45. Epub 2010 Oct 25.

Department of Arthritis and Immunology, Oklahoma Medical Research Foundation, Oklahoma City, OK, USA.

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http://dx.doi.org/10.1016/j.jhsa.2010.08.008DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2998563PMC
December 2010

Clinical implications of novel activating EGFR mutations in malignant peritoneal mesothelioma.

World J Surg Oncol 2010 Oct 13;8:88. Epub 2010 Oct 13.

Department of Surgery, Creighton Cancer Center, Creighton University, Omaha, NE, USA.

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http://dx.doi.org/10.1186/1477-7819-8-88DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2970593PMC
October 2010

Replication of association between a common variant near melanocortin-4 receptor gene and obesity-related traits in Asian Sikhs.

Obesity (Silver Spring) 2010 Feb 13;18(2):425-9. Epub 2009 Aug 13.

Department of Pediatrics, University of Oklahoma Health Sciences Center, Oklahoma City, Oklahoma, USA.

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http://dx.doi.org/10.1038/oby.2009.254DOI Listing
February 2010

A genome-wide ordered-subset linkage analysis for rheumatoid arthritis.

BMC Proc 2007 18;1 Suppl 1:S101. Epub 2007 Dec 18.

Genetic Epidemiology Unit, Arthritis and Immunology Research Program, Oklahoma Medical Research Foundation, 825 Northeast 13th Street, Oklahoma City, Oklahoma 73104, USA.

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http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2367502PMC
http://dx.doi.org/10.1186/1753-6561-1-s1-s101DOI Listing
December 2009

Replication of recently identified associated single-nucleotide polymorphisms from six autoimmune diseases in Genetic Analysis Workshop 16 rheumatoid arthritis data.

BMC Proc 2009 Dec 15;3 Suppl 7:S31. Epub 2009 Dec 15.

Genetic Epidemiology Unit, Arthritis and Immunology Research Program, Oklahoma Medical Research Foundation, 825 Northeast 13th Street, Oklahoma City, Oklahoma 73104 USA.

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http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2795929PMC
http://dx.doi.org/10.1186/1753-6561-3-s7-s31DOI Listing
December 2009

Localization of a gene for keratoconus to a 5.6-Mb interval on 13q32.

Invest Ophthalmol Vis Sci 2009 Apr 14;50(4):1531-9. Epub 2008 Nov 14.

Basic Medical Sciences Program, Washington, Wyoming, Alaska, Montana, and Idaho, Washington State University, Spokane, Washington 99210-1495, USA.

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http://dx.doi.org/10.1167/iovs.08-2173DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4547351PMC
April 2009

Current status of lupus genetics.

Arthritis Res Ther 2007 ;9(3):210

Oklahoma Medical Research Foundation, Arthritis and Immunology Research Program, 825 NE 13th St, Oklahoma City, Oklahoma 73104, USA.

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http://dx.doi.org/10.1186/ar2176DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2206359PMC
January 2008

Meta-analysis of TNF-alpha promoter -308 A/G polymorphism and SLE susceptibility.

Eur J Hum Genet 2006 Mar;14(3):364-71

Division of Rheumatology, Korea University, Seoul, Korea.

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http://dx.doi.org/10.1038/sj.ejhg.5201566DOI Listing
March 2006

Systemic lupus erythematosus susceptibility loci defined by genome scan meta-analysis.

Hum Genet 2005 Dec 6;118(3-4):434-43. Epub 2005 Oct 6.

Division of Rheumatology, Korea University, Seou, Korea.

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http://link.springer.com/10.1007/s00439-005-0073-1
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http://dx.doi.org/10.1007/s00439-005-0073-1DOI Listing
December 2005

Polymorphisms of complement receptor 1 and interleukin-10 genes and systemic lupus erythematosus: a meta-analysis.

Hum Genet 2005 Nov 15;118(2):225-34. Epub 2005 Nov 15.

Arthritis and Immunology Research Program, Oklahoma Medical Research Foundation, Oklahoma City, OK, USA.

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http://dx.doi.org/10.1007/s00439-005-0044-6DOI Listing
November 2005

Linkage at 5q14.3-15 in multiplex systemic lupus erythematosus pedigrees stratified by autoimmune thyroid disease.

Arthritis Rheum 2005 Nov;52(11):3646-50

Oklahoma Medical Research Foundation, 825 NE 13th Street, Oklahoma City, OK 73104, USA.

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http://dx.doi.org/10.1002/art.21413DOI Listing
November 2005

Genetics of systemic lupus erythematosus: how far have we come?

Rheum Dis Clin North Am 2005 May;31(2):223-44, v

Department of Arthritis and Immunology, Oklahoma Medical Research Foundation, Oklahoma City, OK 73003, USA.

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http://dx.doi.org/10.1016/j.rdc.2005.01.005DOI Listing
May 2005

CTLA-4 polymorphisms and systemic lupus erythematosus (SLE): a meta-analysis.

Hum Genet 2005 Apr 2;116(5):361-7. Epub 2005 Feb 2.

Arthritis and Immunology Research Program, Oklahoma Medical Research Foundation, 825 N.E. 13th Street, Oklahoma City, OK 73104, USA.

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http://dx.doi.org/10.1007/s00439-004-1244-1DOI Listing
April 2005

Mapping the systematic lupus erythematosus susceptibility genes.

Methods Mol Med 2004 ;102:11-29

Arthritis and Immunology Program, Oklahoma Medical Research Foundation, Oklahoma City, OK, USA.

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http://link.springer.com/10.1385/1-59259-805-6:011
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http://dx.doi.org/10.1385/1-59259-805-6:011DOI Listing
March 2005

Genetics of human systemic lupus erythematosus: the emerging picture.

Curr Opin Immunol 2004 Dec;16(6):794-800

Arthritis and Immunology Program, Oklahoma Medical Research Foundation, 825 NE 13th Street, Oklahoma City, Oklahoma 73104, USA.

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http://linkinghub.elsevier.com/retrieve/pii/S095279150400153
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http://dx.doi.org/10.1016/j.coi.2004.09.007DOI Listing
December 2004

Human fetal, cord blood, and adult lymphocyte progenitors have similar potential for generating B cells with a diverse immunoglobulin repertoire.

Blood 2004 Nov 15;104(9):2981-7. Epub 2004 Jul 15.

Program in Molecular Immunogenetics, Oklahoma Medical Research Foundation, Oklahoma City, OK 73104, USA.

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http://www.bloodjournal.org/cgi/doi/10.1182/blood-2003-11-39
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http://dx.doi.org/10.1182/blood-2003-11-3961DOI Listing
November 2004

Genetic admixture of European FRDA genes is the cause of Friedreich ataxia in the Mexican population.

Genomics 2004 Nov;84(5):779-84

Department of Biochemistry & Molecular Biology, University of Oklahoma Health Sciences Center, 975 NE, 10th Street, BRC458, Oklahoma City, OK 73104, USA.

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http://dx.doi.org/10.1016/j.ygeno.2004.07.014DOI Listing
November 2004

Systemic lupus erythematosus (SLE) and chromosome 16: confirmation of linkage to 16q12-13 and evidence for genetic heterogeneity.

Eur J Hum Genet 2004 Aug;12(8):668-72

Arthritis and Immunology Research Program, Oklahoma Medical Research Foundation, Oklahoma City, Oklahoma 73104, USA.

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http://dx.doi.org/10.1038/sj.ejhg.5201209DOI Listing
August 2004

Linkage at 12q24 with systemic lupus erythematosus (SLE) is established and confirmed in Hispanic and European American families.

Am J Hum Genet 2004 Jan 4;74(1):73-82. Epub 2003 Dec 4.

Arthritis and Immunology Research Program and Genetic Epidemiology Unit, Oklahoma Medical Research Foundation, Oklahoma City, OK 73104, USA.

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http://linkinghub.elsevier.com/retrieve/pii/S000292970761946
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http://www.ncbi.nlm.nih.gov/pmc/articles/PMC1181914PMC
http://dx.doi.org/10.1086/380913DOI Listing
January 2004

A candidate region on 11p13 for systemic lupus erythematosus: a linkage identified in African-American families.

J Investig Dermatol Symp Proc 2004 Jan;9(1):64-7

Genetic Epidemiology Unit, Oklahoma Medical Research Foundation, Oklahoma City, Oklahoma 73104, USA.

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http://linkinghub.elsevier.com/retrieve/pii/S0022202X1552984
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http://dx.doi.org/10.1111/j.1087-0024.2004.00830.xDOI Listing
January 2004

Segregation analysis of blood pressure and body mass index in a rural US community.

Hum Biol 2002 Feb;74(1):11-23

Arthritis and Immunology Research Program, Oklahoma Medical Research Foundation, Oklahoma City, USA.

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February 2002