Suyash S Shringarpure

Suyash S Shringarpure

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Suyash S Shringarpure

Suyash S Shringarpure

Publications by authors named "Suyash S Shringarpure"

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Spectrum and prevalence of genetic predisposition in medulloblastoma: a retrospective genetic study and prospective validation in a clinical trial cohort.

Authors:
Sebastian M Waszak Paul A Northcott Ivo Buchhalter Giles W Robinson Christian Sutter Susanne Groebner Kerstin B Grund Laurence Brugières David T W Jones Kristian W Pajtler A Sorana Morrissy Marcel Kool Dominik Sturm Lukas Chavez Aurelie Ernst Sebastian Brabetz Michael Hain Thomas Zichner Maia Segura-Wang Joachim Weischenfeldt Tobias Rausch Balca R Mardin Xin Zhou Cristina Baciu Christian Lawerenz Jennifer A Chan Pascale Varlet Lea Guerrini-Rousseau Daniel W Fults Wiesława Grajkowska Peter Hauser Nada Jabado Young-Shin Ra Karel Zitterbart Suyash S Shringarpure Francisco M De La Vega Carlos D Bustamante Ho-Keung Ng Arie Perry Tobey J MacDonald Pablo Hernáiz Driever Anne E Bendel Daniel C Bowers Geoffrey McCowage Murali M Chintagumpala Richard Cohn Timothy Hassall Gudrun Fleischhack Tone Eggen Finn Wesenberg Maria Feychting Birgitta Lannering Joachim Schüz Christoffer Johansen Tina V Andersen Martin Röösli Claudia E Kuehni Michael Grotzer Kristina Kjaerheim Camelia M Monoranu Tenley C Archer Elizabeth Duke Scott L Pomeroy Redmond Shelagh Stephan Frank David Sumerauer Wolfram Scheurlen Marina V Ryzhova Till Milde Christian P Kratz David Samuel Jinghui Zhang David A Solomon Marco Marra Roland Eils Claus R Bartram Katja von Hoff Stefan Rutkowski Vijay Ramaswamy Richard J Gilbertson Andrey Korshunov Michael D Taylor Peter Lichter David Malkin Amar Gajjar Jan O Korbel Stefan M Pfister

Lancet Oncol 2018 06 9;19(6):785-798. Epub 2018 May 9.

Department of Pediatric Hematology and Oncology, Heidelberg University Hospital, Heidelberg, Germany; Division of Pediatric Neurooncology, German Cancer Consortium (DKTK), German Cancer Research Center (DKFZ), Heidelberg, Germany; Hopp Children's Cancer Center at the NCT Heidelberg, Heidelberg, Germany. Electronic address:

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https://linkinghub.elsevier.com/retrieve/pii/S14702045183024
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http://dx.doi.org/10.1016/S1470-2045(18)30242-0DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5984248PMC
June 2018

Using genotype array data to compare multi- and single-sample variant calls and improve variant call sets from deep coverage whole-genome sequencing data.

Authors:
Suyash S Shringarpure Rasika A Mathias Ryan D Hernandez Timothy D O'Connor Zachary A Szpiech Raul Torres Francisco M De La Vega Carlos D Bustamante Kathleen C Barnes Margaret A Taub

Bioinformatics 2017 04;33(8):1147-1153

Biomedical Sciences Graduate Program, University of California, San Francisco, San Francisco, CA, USA.

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http://dx.doi.org/10.1093/bioinformatics/btw786DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5408850PMC
April 2017

A continuum of admixture in the Western Hemisphere revealed by the African Diaspora genome.

Authors:
Rasika Ann Mathias Margaret A Taub Christopher R Gignoux Wenqing Fu Shaila Musharoff Timothy D O'Connor Candelaria Vergara Dara G Torgerson Maria Pino-Yanes Suyash S Shringarpure Lili Huang Nicholas Rafaels Meher Preethi Boorgula Henry Richard Johnston Victor E Ortega Albert M Levin Wei Song Raul Torres Badri Padhukasahasram Celeste Eng Delmy-Aracely Mejia-Mejia Trevor Ferguson Zhaohui S Qin Alan F Scott Maria Yazdanbakhsh James G Wilson Javier Marrugo Leslie A Lange Rajesh Kumar Pedro C Avila L Keoki Williams Harold Watson Lorraine B Ware Christopher Olopade Olufunmilayo Olopade Ricardo Oliveira Carole Ober Dan L Nicolae Deborah Meyers Alvaro Mayorga Jennifer Knight-Madden Tina Hartert Nadia N Hansel Marilyn G Foreman Jean G Ford Mezbah U Faruque Georgia M Dunston Luis Caraballo Esteban G Burchard Eugene Bleecker Maria Ilma Araujo Edwin Francisco Herrera-Paz Kimberly Gietzen Wendy E Grus Michael Bamshad Carlos D Bustamante Eimear E Kenny Ryan D Hernandez Terri H Beaty Ingo Ruczinski Joshua Akey Kathleen C Barnes

Nat Commun 2016 10 11;7:12522. Epub 2016 Oct 11.

Department of Medicine, Johns Hopkins University, Baltimore, Maryland 21224, USA.

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http://dx.doi.org/10.1038/ncomms12522DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5062574PMC
October 2016

Efficient analysis of large datasets and sex bias with ADMIXTURE.

Authors:
Suyash S Shringarpure Carlos D Bustamante Kenneth Lange David H Alexander

BMC Bioinformatics 2016 May 23;17:218. Epub 2016 May 23.

Pacific Biosciences, Menlo Park, California, USA.

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http://dx.doi.org/10.1186/s12859-016-1082-xDOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4877806PMC
May 2016

Inexpensive and Highly Reproducible Cloud-Based Variant Calling of 2,535 Human Genomes.

Authors:
Suyash S Shringarpure Andrew Carroll Francisco M De La Vega Carlos D Bustamante

PLoS One 2015 25;10(6):e0129277. Epub 2015 Jun 25.

Department of Genetics, Stanford University, Stanford, California 94305, USA.

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http://journals.plos.org/plosone/article?id=10.1371/journal.pone.0129277PLOS
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4482534PMC
April 2016

Privacy Risks from Genomic Data-Sharing Beacons.

Authors:
Suyash S Shringarpure Carlos D Bustamante

Am J Hum Genet 2015 Nov 29;97(5):631-46. Epub 2015 Oct 29.

Department of Genetics, Stanford University, Stanford, CA 94305, USA. Electronic address:

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https://linkinghub.elsevier.com/retrieve/pii/S00029297150037
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http://dx.doi.org/10.1016/j.ajhg.2015.09.010DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4667107PMC
November 2015

POPULATION GENETICS. Genomic evidence for the Pleistocene and recent population history of Native Americans.

Authors:
Maanasa Raghavan Matthias Steinrücken Kelley Harris Stephan Schiffels Simon Rasmussen Michael DeGiorgio Anders Albrechtsen Cristina Valdiosera María C Ávila-Arcos Anna-Sapfo Malaspinas Anders Eriksson Ida Moltke Mait Metspalu Julian R Homburger Jeff Wall Omar E Cornejo J Víctor Moreno-Mayar Thorfinn S Korneliussen Tracey Pierre Morten Rasmussen Paula F Campos Peter de Barros Damgaard Morten E Allentoft John Lindo Ene Metspalu Ricardo Rodríguez-Varela Josefina Mansilla Celeste Henrickson Andaine Seguin-Orlando Helena Malmström Thomas Stafford Suyash S Shringarpure Andrés Moreno-Estrada Monika Karmin Kristiina Tambets Anders Bergström Yali Xue Vera Warmuth Andrew D Friend Joy Singarayer Paul Valdes Francois Balloux Ilán Leboreiro Jose Luis Vera Hector Rangel-Villalobos Davide Pettener Donata Luiselli Loren G Davis Evelyne Heyer Christoph P E Zollikofer Marcia S Ponce de León Colin I Smith Vaughan Grimes Kelly-Anne Pike Michael Deal Benjamin T Fuller Bernardo Arriaza Vivien Standen Maria F Luz Francois Ricaut Niede Guidon Ludmila Osipova Mikhail I Voevoda Olga L Posukh Oleg Balanovsky Maria Lavryashina Yuri Bogunov Elza Khusnutdinova Marina Gubina Elena Balanovska Sardana Fedorova Sergey Litvinov Boris Malyarchuk Miroslava Derenko M J Mosher David Archer Jerome Cybulski Barbara Petzelt Joycelynn Mitchell Rosita Worl Paul J Norman Peter Parham Brian M Kemp Toomas Kivisild Chris Tyler-Smith Manjinder S Sandhu Michael Crawford Richard Villems David Glenn Smith Michael R Waters Ted Goebel John R Johnson Ripan S Malhi Mattias Jakobsson David J Meltzer Andrea Manica Richard Durbin Carlos D Bustamante Yun S Song Rasmus Nielsen Eske Willerslev

Science 2015 Aug 21;349(6250):aab3884. Epub 2015 Jul 21.

Centre for GeoGenetics, Natural History Museum of Denmark, University of Copenhagen, Øster Voldgade 5-7, 1350 Copenhagen, Denmark.

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http://dx.doi.org/10.1126/science.aab3884DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4733658PMC
August 2015