Susmita Datta

Susmita Datta

UNVERIFIED PROFILE

Are you Susmita Datta?   Register this Author

Register author
Susmita Datta

Susmita Datta

Publications by authors named "Susmita Datta"

Are you Susmita Datta?   Register this Author

68Publications

1083Reads

9Profile Views

Identification of city specific important bacterial signature for the MetaSUB CAMDA challenge microbiome data.

Biol Direct 2019 07 24;14(1):11. Epub 2019 Jul 24.

Department of Biostatistics, University of Florida, 2004 Mowry Rd, Gainesville, FL, 32610, USA.

View Article

Download full-text PDF

Source
http://dx.doi.org/10.1186/s13062-019-0243-zDOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6657067PMC
July 2019

Detection of differentially expressed genes in discrete single-cell RNA sequencing data using a hurdle model with correlated random effects.

Biometrics 2019 Apr 22. Epub 2019 Apr 22.

Department of Biostatistics, University of Florida, Gainesville, Florida.

View Article

Download full-text PDF

Source
http://dx.doi.org/10.1111/biom.13074DOI Listing
April 2019

Medical schools, primary care and family medicine: clerkship directors' perceptions of the current environment.

Fam Pract 2019 Apr 25. Epub 2019 Apr 25.

Department of Community Health and Family Medicine, University of Florida College of Medicine, Gainesville, FL, USA.

View Article

Download full-text PDF

Source
http://dx.doi.org/10.1093/fampra/cmz015DOI Listing
April 2019

Unraveling bacterial fingerprints of city subways from microbiome 16S gene profiles.

Biol Direct 2018 05 22;13(1):10. Epub 2018 May 22.

Department of Biostatistics, University of Florida, 2004 Mowry Rd, Gainesville, FL, 32610, USA.

View Article

Download full-text PDF

Source
http://dx.doi.org/10.1186/s13062-018-0215-8DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5964687PMC
May 2018

Predicting survival times for neuroblastoma patients using RNA-seq expression profiles.

Biol Direct 2018 05 30;13(1):11. Epub 2018 May 30.

Department of BiostatisticsUniversity of Florida, 2004 Mowry Rd, Gainesville, 32611, USA.

View Article

Download full-text PDF

Source
http://dx.doi.org/10.1186/s13062-018-0213-xDOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5977759PMC
May 2018

Profiling the effects of short time-course cold ischemia on tumor protein phosphorylation using a Bayesian approach.

Biometrics 2018 03 25;74(1):331-341. Epub 2017 Jul 25.

Department of Biostatistics, University of Florida, Gainesville, Florida, U.S.A.

View Article

Download full-text PDF

Source
http://dx.doi.org/10.1111/biom.12742DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5992063PMC
March 2018

The subgingival microbiome in patients with established rheumatoid arthritis.

Rheumatology (Oxford) 2018 Mar 19. Epub 2018 Mar 19.

Department of Internal Medicine, College of Medicine, University of Nebraska Medical Center, USA.

View Article

Download full-text PDF

Source
http://dx.doi.org/10.1093/rheumatology/key052DOI Listing
March 2018

Bayesian Hierarchical Model for Protein Identifications.

J Appl Stat 2019 25;46(1):30-46. Epub 2018 Mar 25.

Department of Biostatistics, University of Florida, Gainesville, FL 32611.

View Article

Download full-text PDF

Source
http://dx.doi.org/10.1080/02664763.2018.1454893DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6519717PMC
March 2018

EAMA: Empirically adjusted meta-analysis for large-scale simultaneous hypothesis testing in genomic experiments.

PLoS One 2017 31;12(10):e0187287. Epub 2017 Oct 31.

Department of Biostatistics, University of Florida, Gainesville, Florida, United States of America.

View Article

Download full-text PDF

Source
http://journals.plos.org/plosone/article?id=10.1371/journal.pone.0187287PLOS
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5663489PMC
November 2017

optCluster: An R Package for Determining the Optimal Clustering Algorithm.

Bioinformation 2017 31;13(3):101-103. Epub 2017 Mar 31.

Department of Biostatistics, University of Florida, Gainesville, Florida, 32611, USA.

View Article

Download full-text PDF

Source
http://dx.doi.org/10.6026/97320630013101DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5450252PMC
March 2017

Monotonic single-index models to assess drug interactions.

Stat Med 2017 02 2;36(4):655-670. Epub 2016 Nov 2.

Department of Bioinformatics and Biostatistics, SPHIS, University of Louisville, Louisville, KY, U.S.A.

View Article

Download full-text PDF

Source
http://dx.doi.org/10.1002/sim.7158DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5217167PMC
February 2017

A novel statistical approach for identification of the master regulator transcription factor.

BMC Bioinformatics 2017 Feb 2;18(1):79. Epub 2017 Feb 2.

Department of Biostatistics, University of Florida, Gainesville, FL, 32611, USA.

View Article

Download full-text PDF

Source
http://dx.doi.org/10.1186/s12859-017-1499-xDOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5288875PMC
February 2017

Exploring the importance of cancer pathways by meta-analysis of differential protein expression networks in three different cancers.

Biol Direct 2016 12 20;11(1):65. Epub 2016 Dec 20.

Department of Biostatistics, University of Florida, Gainesville, FL, 32611, USA.

View Article

Download full-text PDF

Source
http://dx.doi.org/10.1186/s13062-016-0168-8DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5168844PMC
December 2016

Inter-platform concordance of gene expression data for the prediction of chemical mode of action.

Biol Direct 2016 12 20;11(1):67. Epub 2016 Dec 20.

Department of Biostatistics, University of Florida, Gainesville, 32603, FL, USA.

View Article

Download full-text PDF

Source
http://dx.doi.org/10.1186/s13062-016-0167-9DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5168706PMC
December 2016

Temporal Prediction of Future State Occupation in a Multistate Model from High-Dimensional Baseline Covariates via Pseudo-Value Regression.

J Stat Comput Simul 2017 20;87(7):1363-1378. Epub 2016 Dec 20.

Department of Biostatistics, University of Florida, Gainesville, FL, USA.

View Article

Download full-text PDF

Source
http://dx.doi.org/10.1080/00949655.2016.1263992DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5714309PMC
December 2016

Differential network analysis with multiply imputed lipidomic data.

PLoS One 2015 30;10(3):e0121449. Epub 2015 Mar 30.

Department of Bioinformatics and Biostatistics, University of Louisville, Louisville, Kentucky, USA.

View Article

Download full-text PDF

Source
http://journals.plos.org/plosone/article?id=10.1371/journal.pone.0121449PLOS
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4378983PMC
April 2016

New data and an old puzzle: the negative association between schizophrenia and rheumatoid arthritis.

Authors:
S Hong Lee Enda M Byrne Christina M Hultman Anna Kähler Anna A E Vinkhuyzen Stephan Ripke Ole A Andreassen Thomas Frisell Alexander Gusev Xinli Hu Robert Karlsson Vasilis X Mantzioris John J McGrath Divya Mehta Eli A Stahl Qiongyi Zhao Kenneth S Kendler Patrick F Sullivan Alkes L Price Michael O'Donovan Yukinori Okada Bryan J Mowry Soumya Raychaudhuri Naomi R Wray William Byerley Wiepke Cahn Rita M Cantor Sven Cichon Paul Cormican David Curtis Srdjan Djurovic Valentina Escott-Price Pablo V Gejman Lyudmila Georgieva Ina Giegling Thomas F Hansen Andrés Ingason Yunjung Kim Bettina Konte Phil H Lee Andrew McIntosh Andrew McQuillin Derek W Morris Markus M Nöthen Colm O'Dushlaine Ann Olincy Line Olsen Carlos N Pato Michele T Pato Benjamin S Pickard Danielle Posthuma Henrik B Rasmussen Marcella Rietschel Dan Rujescu Thomas G Schulze Jeremy M Silverman Srinivasa Thirumalai Thomas Werge Ingrid Agartz Farooq Amin Maria H Azevedo Nicholas Bass Donald W Black Douglas H R Blackwood Richard Bruggeman Nancy G Buccola Khalid Choudhury Robert C Cloninger Aiden Corvin Nicholas Craddock Mark J Daly Susmita Datta Gary J Donohoe Jubao Duan Frank Dudbridge Ayman Fanous Robert Freedman Nelson B Freimer Marion Friedl Michael Gill Hugh Gurling Lieuwe De Haan Marian L Hamshere Annette M Hartmann Peter A Holmans René S Kahn Matthew C Keller Elaine Kenny George K Kirov Lydia Krabbendam Robert Krasucki Jacob Lawrence Todd Lencz Douglas F Levinson Jeffrey A Lieberman Dan-Yu Lin Don H Linszen Patrik K E Magnusson Wolfgang Maier Anil K Malhotra Manuel Mattheisen Morten Mattingsdal Steven A McCarroll Helena Medeiros Ingrid Melle Vihra Milanova Inez Myin-Germeys Benjamin M Neale Roel A Ophoff Michael J Owen Jonathan Pimm Shaun M Purcell Vinay Puri Digby J Quested Lizzy Rossin Douglas Ruderfer Alan R Sanders Jianxin Shi Pamela Sklar David St Clair T Scott Stroup Jim Van Os Peter M Visscher Durk Wiersma Stanley Zammit S Louis Bridges Hyon K Choi Marieke J H Coenen Niek de Vries Philippe Dieud Jeffrey D Greenberg Tom W J Huizinga Leonid Padyukov Katherine A Siminovitch Paul P Tak Jane Worthington Philip L De Jager Joshua C Denny Peter K Gregersen Lars Klareskog Xavier Mariette Robert M Plenge Mart van Laar Piet van Riel

Int J Epidemiol 2015 Oct;44(5):1706-21

View Article

Download full-text PDF

Source
http://dx.doi.org/10.1093/ije/dyv136DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4881824PMC
October 2015

Differential network analysis in human cancer research.

Curr Pharm Des 2014 ;20(1):4-10

Department of Bioinformatics and Biostatistics, University of Louisville, Louisville, KY, 40202, USA.

View Article

Download full-text PDF

Source
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4868626PMC
http://dx.doi.org/10.2174/138161282001140113122316DOI Listing
September 2014

dna: An R package for differential network analysis.

Bioinformation 2014 23;10(4):233-4. Epub 2014 Apr 23.

Department of Bioinformatics and Biostatistics, University of Louisville, Louisville, KY 40292 USA.

View Article

Download full-text PDF

Source
http://dx.doi.org/10.6026/97320630010233DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4070055PMC
June 2014

COUP-TFII inhibits NFkappaB activation in endocrine-resistant breast cancer cells.

Mol Cell Endocrinol 2014 Jan 17;382(1):358-367. Epub 2013 Oct 17.

Department of Biochemistry & Molecular Biology, Center for Genetics and Molecular Medicine, University of Louisville School of Medicine, Louisville, KY 40292, USA. Electronic address:

View Article

Download full-text PDF

Source
https://linkinghub.elsevier.com/retrieve/pii/S03037207130045
Publisher Site
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5089806PMC
http://dx.doi.org/10.1016/j.mce.2013.10.010DOI Listing
January 2014

Feature selection and machine learning with mass spectrometry data.

Authors:
Susmita Datta

Methods Mol Biol 2013 ;1007:237-62

Department of Bioinformatics and Biostatistics, School of Public Health and Information Sciences, University of Louisville, Louisville, KY, USA.

View Article

Download full-text PDF

Source
http://dx.doi.org/10.1007/978-1-62703-392-3_10DOI Listing
December 2013

Genetic relationship between five psychiatric disorders estimated from genome-wide SNPs.

Authors:
S Hong Lee Stephan Ripke Benjamin M Neale Stephen V Faraone Shaun M Purcell Roy H Perlis Bryan J Mowry Anita Thapar Michael E Goddard John S Witte Devin Absher Ingrid Agartz Huda Akil Farooq Amin Ole A Andreassen Adebayo Anjorin Richard Anney Verneri Anttila Dan E Arking Philip Asherson Maria H Azevedo Lena Backlund Judith A Badner Anthony J Bailey Tobias Banaschewski Jack D Barchas Michael R Barnes Thomas B Barrett Nicholas Bass Agatino Battaglia Michael Bauer Mònica Bayés Frank Bellivier Sarah E Bergen Wade Berrettini Catalina Betancur Thomas Bettecken Joseph Biederman Elisabeth B Binder Donald W Black Douglas H R Blackwood Cinnamon S Bloss Michael Boehnke Dorret I Boomsma Gerome Breen René Breuer Richard Bruggeman Paul Cormican Nancy G Buccola Jan K Buitelaar William E Bunney Joseph D Buxbaum William F Byerley Enda M Byrne Sian Caesar Wiepke Cahn Rita M Cantor Miguel Casas Aravinda Chakravarti Kimberly Chambert Khalid Choudhury Sven Cichon C Robert Cloninger David A Collier Edwin H Cook Hilary Coon Bru Cormand Aiden Corvin William H Coryell David W Craig Ian W Craig Jennifer Crosbie Michael L Cuccaro David Curtis Darina Czamara Susmita Datta Geraldine Dawson Richard Day Eco J De Geus Franziska Degenhardt Srdjan Djurovic Gary J Donohoe Alysa E Doyle Jubao Duan Frank Dudbridge Eftichia Duketis Richard P Ebstein Howard J Edenberg Josephine Elia Sean Ennis Bruno Etain Ayman Fanous Anne E Farmer I Nicol Ferrier Matthew Flickinger Eric Fombonne Tatiana Foroud Josef Frank Barbara Franke Christine Fraser Robert Freedman Nelson B Freimer Christine M Freitag Marion Friedl Louise Frisén Louise Gallagher Pablo V Gejman Lyudmila Georgieva Elliot S Gershon Daniel H Geschwind Ina Giegling Michael Gill Scott D Gordon Katherine Gordon-Smith Elaine K Green Tiffany A Greenwood Dorothy E Grice Magdalena Gross Detelina Grozeva Weihua Guan Hugh Gurling Lieuwe De Haan Jonathan L Haines Hakon Hakonarson Joachim Hallmayer Steven P Hamilton Marian L Hamshere Thomas F Hansen Annette M Hartmann Martin Hautzinger Andrew C Heath Anjali K Henders Stefan Herms Ian B Hickie Maria Hipolito Susanne Hoefels Peter A Holmans Florian Holsboer Witte J Hoogendijk Jouke-Jan Hottenga Christina M Hultman Vanessa Hus Andrés Ingason Marcus Ising Stéphane Jamain Edward G Jones Ian Jones Lisa Jones Jung-Ying Tzeng Anna K Kähler René S Kahn Radhika Kandaswamy Matthew C Keller James L Kennedy Elaine Kenny Lindsey Kent Yunjung Kim George K Kirov Sabine M Klauck Lambertus Klei James A Knowles Martin A Kohli Daniel L Koller Bettina Konte Ania Korszun Lydia Krabbendam Robert Krasucki Jonna Kuntsi Phoenix Kwan Mikael Landén Niklas Långström Mark Lathrop Jacob Lawrence William B Lawson Marion Leboyer David H Ledbetter Phil H Lee Todd Lencz Klaus-Peter Lesch Douglas F Levinson Cathryn M Lewis Jun Li Paul Lichtenstein Jeffrey A Lieberman Dan-Yu Lin Don H Linszen Chunyu Liu Falk W Lohoff Sandra K Loo Catherine Lord Jennifer K Lowe Susanne Lucae Donald J MacIntyre Pamela A F Madden Elena Maestrini Patrik K E Magnusson Pamela B Mahon Wolfgang Maier Anil K Malhotra Shrikant M Mane Christa L Martin Nicholas G Martin Manuel Mattheisen Keith Matthews Morten Mattingsdal Steven A McCarroll Kevin A McGhee James J McGough Patrick J McGrath Peter McGuffin Melvin G McInnis Andrew McIntosh Rebecca McKinney Alan W McLean Francis J McMahon William M McMahon Andrew McQuillin Helena Medeiros Sarah E Medland Sandra Meier Ingrid Melle Fan Meng Jobst Meyer Christel M Middeldorp Lefkos Middleton Vihra Milanova Ana Miranda Anthony P Monaco Grant W Montgomery Jennifer L Moran Daniel Moreno-De-Luca Gunnar Morken Derek W Morris Eric M Morrow Valentina Moskvina Pierandrea Muglia Thomas W Mühleisen Walter J Muir Bertram Müller-Myhsok Michael Murtha Richard M Myers Inez Myin-Germeys Michael C Neale Stan F Nelson Caroline M Nievergelt Ivan Nikolov Vishwajit Nimgaonkar Willem A Nolen Markus M Nöthen John I Nurnberger Evaristus A Nwulia Dale R Nyholt Colm O'Dushlaine Robert D Oades Ann Olincy Guiomar Oliveira Line Olsen Roel A Ophoff Urban Osby Michael J Owen Aarno Palotie Jeremy R Parr Andrew D Paterson Carlos N Pato Michele T Pato Brenda W Penninx Michele L Pergadia Margaret A Pericak-Vance Benjamin S Pickard Jonathan Pimm Joseph Piven Danielle Posthuma James B Potash Fritz Poustka Peter Propping Vinay Puri Digby J Quested Emma M Quinn Josep Antoni Ramos-Quiroga Henrik B Rasmussen Soumya Raychaudhuri Karola Rehnström Andreas Reif Marta Ribasés John P Rice Marcella Rietschel Kathryn Roeder Herbert Roeyers Lizzy Rossin Aribert Rothenberger Guy Rouleau Douglas Ruderfer Dan Rujescu Alan R Sanders Stephan J Sanders Susan L Santangelo Joseph A Sergeant Russell Schachar Martin Schalling Alan F Schatzberg William A Scheftner Gerard D Schellenberg Stephen W Scherer Nicholas J Schork Thomas G Schulze Johannes Schumacher Markus Schwarz Edward Scolnick Laura J Scott Jianxin Shi Paul D Shilling Stanley I Shyn Jeremy M Silverman Susan L Slager Susan L Smalley Johannes H Smit Erin N Smith Edmund J S Sonuga-Barke David St Clair Matthew State Michael Steffens Hans-Christoph Steinhausen John S Strauss Jana Strohmaier T Scott Stroup James S Sutcliffe Peter Szatmari Szabocls Szelinger Srinivasa Thirumalai Robert C Thompson Alexandre A Todorov Federica Tozzi Jens Treutlein Manfred Uhr Edwin J C G van den Oord Gerard Van Grootheest Jim Van Os Astrid M Vicente Veronica J Vieland John B Vincent Peter M Visscher Christopher A Walsh Thomas H Wassink Stanley J Watson Myrna M Weissman Thomas Werge Thomas F Wienker Ellen M Wijsman Gonneke Willemsen Nigel Williams A Jeremy Willsey Stephanie H Witt Wei Xu Allan H Young Timothy W Yu Stanley Zammit Peter P Zandi Peng Zhang Frans G Zitman Sebastian Zöllner Bernie Devlin John R Kelsoe Pamela Sklar Mark J Daly Michael C O'Donovan Nicholas Craddock Patrick F Sullivan Jordan W Smoller Kenneth S Kendler Naomi R Wray

Nat Genet 2013 Sep 11;45(9):984-94. Epub 2013 Aug 11.

The University of Queensland, Queensland Brain Institute, Brisbane, Queensland, Australia.

View Article

Download full-text PDF

Source
http://dx.doi.org/10.1038/ng.2711DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3800159PMC
September 2013

svapls: an R package to correct for hidden factors of variability in gene expression studies.

BMC Bioinformatics 2013 Jul 24;14:236. Epub 2013 Jul 24.

Department of Bioinformatics and Biostatistics, University of Louisville, Louisville, KY-40202, USA.

View Article

Download full-text PDF

Source
http://dx.doi.org/10.1186/1471-2105-14-236DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3733742PMC
July 2013

Surrogate variable analysis using partial least squares (SVA-PLS) in gene expression studies.

Bioinformatics 2012 Mar 11;28(6):799-806. Epub 2012 Jan 11.

Department of Bioinformatics and Biostatistics, University of Louisville, Louisville, KY 40202, USA.

View Article

Download full-text PDF

Source
http://dx.doi.org/10.1093/bioinformatics/bts022DOI Listing
March 2012

Differential expression of microRNA expression in tamoxifen-sensitive MCF-7 versus tamoxifen-resistant LY2 human breast cancer cells.

Cancer Lett 2011 Dec 10;313(1):26-43. Epub 2011 Sep 10.

Department of Biochemistry and Molecular Biology, Center for Genetics and Molecular Medicine, University of Louisville School of Medicine, Louisville, KY 40292, USA.

View Article

Download full-text PDF

Source
http://dx.doi.org/10.1016/j.canlet.2011.08.018DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3214732PMC
December 2011

Modeling microRNA-mRNA interactions using PLS regression in human colon cancer.

BMC Med Genomics 2011 May 19;4:44. Epub 2011 May 19.

Department of Bioinformatics and Biostatistics, University of Louisville, Louisville, KY 40202, USA.

View Article

Download full-text PDF

Source
http://dx.doi.org/10.1186/1755-8794-4-44DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3123543PMC
May 2011

Statistical inference methods for sparse biological time series data.

BMC Syst Biol 2011 Apr 25;5:57. Epub 2011 Apr 25.

Department of Bioinformatics and Biostatistics, School of Public Health and Information Sciences, University of Louisville, Louisville, KY 40202, USA.

View Article

Download full-text PDF

Source
http://dx.doi.org/10.1186/1752-0509-5-57DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3114728PMC
April 2011

An adaptive optimal ensemble classifier via bagging and rank aggregation with applications to high dimensional data.

BMC Bioinformatics 2010 Aug 18;11:427. Epub 2010 Aug 18.

Department of Bioinformatics and Biostatistics, University of Louisville, Louisville, KY, USA.

View Article

Download full-text PDF

Source
http://dx.doi.org/10.1186/1471-2105-11-427DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2933716PMC
August 2010

Statistical Analyses of Next Generation Sequence Data: A Partial Overview.

J Proteomics Bioinform 2010 Jun;3(6):183-190

Department of Bioinformatics and Biostatistics, University of Louisville, Louisville, KY 40202, USA.

View Article

Download full-text PDF

Source
https://www.omicsonline.com/ArchiveJPB/2010/June/03/JPB-03-1
Publisher Site
http://dx.doi.org/10.4172/jpb.1000138DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2989618PMC
June 2010

Feature selection and machine learning with mass spectrometry data.

Methods Mol Biol 2010 ;593:205-29

Department of Bioinformatics and Biostatistics, School of Public Health and Information Sciences, University of Louisville, Louisville, KY, USA.

View Article

Download full-text PDF

Source
http://dx.doi.org/10.1007/978-1-60327-194-3_11DOI Listing
February 2010

A statistical framework for differential network analysis from microarray data.

BMC Bioinformatics 2010 Feb 19;11:95. Epub 2010 Feb 19.

Department of Mathematics, University of Louisville, Louisville, KY 40292, USA.

View Article

Download full-text PDF

Source
http://bmcbioinformatics.biomedcentral.com/articles/10.1186/
Publisher Site
http://dx.doi.org/10.1186/1471-2105-11-95DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2838870PMC
February 2010

Evidence for the association of the DAOA (G72) gene with schizophrenia and bipolar disorder but not for the association of the DAO gene with schizophrenia.

Behav Brain Funct 2009 Jul 8;5:28. Epub 2009 Jul 8.

Molecular Psychiatry Laboratory, Research Department of Mental Health Sciences, University College London Medical School, Windeyer Institute of Medical Sciences, 46 Cleveland Street, London, W1T 4JF, UK.

View Article

Download full-text PDF

Source
http://dx.doi.org/10.1186/1744-9081-5-28DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2717980PMC
July 2009

RankAggreg, an R package for weighted rank aggregation.

BMC Bioinformatics 2009 Feb 19;10:62. Epub 2009 Feb 19.

Department of Bioinformatics and Biostatistics, University of Louisville, Louisville, KY, USA.

View Article

Download full-text PDF

Source
http://dx.doi.org/10.1186/1471-2105-10-62DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2669484PMC
February 2009

Computational biology touches all bases. A report of the 6th Annual Rocky Mountain Bioinformatics Conference, Aspen, USA, 4-7 December 2008.

Genome Biol 2009 Feb 17;10(2):303. Epub 2009 Feb 17.

Department of Bioinformatics and Biostatistics, School of Public Health and Information Sciences, University of Louisville, Louisville, KY 40292, USA.

View Article

Download full-text PDF

Source
http://genomebiology.biomedcentral.com/articles/10.1186/gb-2
Publisher Site
http://dx.doi.org/10.1186/gb-2009-10-2-303DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2688279PMC
February 2009

Finding common genes in multiple cancer types through meta-analysis of microarray experiments: a rank aggregation approach.

Genomics 2008 Dec 20;92(6):400-3. Epub 2008 Jun 20.

Department of Bioinformatics and Biostatistics, University of Louisville, Louisville, KY 40292, USA.

View Article

Download full-text PDF

Source
http://dx.doi.org/10.1016/j.ygeno.2008.05.003DOI Listing
December 2008

Confirmation of the genetic association between the U2AF homology motif (UHM) kinase 1 (UHMK1) gene and schizophrenia on chromosome 1q23.3.

Eur J Hum Genet 2008 Oct 16;16(10):1275-82. Epub 2008 Apr 16.

Molecular Psychiatry Laboratory, Department of Mental Health Sciences, University College London Medical School, Windeyer Institute of Medical Sciences, London, UK.

View Article

Download full-text PDF

Source
http://dx.doi.org/10.1038/ejhg.2008.76DOI Listing
October 2008

Fetal alcohol syndrome (FAS) in C57BL/6 mice detected through proteomics screening of the amniotic fluid.

Birth Defects Res A Clin Mol Teratol 2008 Apr;82(4):177-86

Department of Bioinformatics and Biostatistics, School of Public Health and Information Science, University of Louisville, Louisville, Kentucky 40292, USA.

View Article

Download full-text PDF

Source
http://dx.doi.org/10.1002/bdra.20440DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2803677PMC
April 2008

Biologically supervised hierarchical clustering algorithms for gene expression data.

Conf Proc IEEE Eng Med Biol Soc 2006 ;1:5515-8

Kidney Disease program and Clinical Proteomics Center, University of Louisville, KY, USA.

View Article

Download full-text PDF

Source
http://dx.doi.org/10.1109/IEMBS.2006.260308DOI Listing
March 2008

Reconstruction of genetic association networks from microarray data: a partial least squares approach.

Bioinformatics 2008 Feb 18;24(4):561-8. Epub 2008 Jan 18.

Department of Bioinformatics and Biostatistics, University of Louisville, Louisville, KY 40292, USA.

View Article

Download full-text PDF

Source
http://dx.doi.org/10.1093/bioinformatics/btm640DOI Listing
February 2008

Weighted rank aggregation of cluster validation measures: a Monte Carlo cross-entropy approach.

Bioinformatics 2007 Jul 5;23(13):1607-15. Epub 2007 May 5.

Department of Bioinformatics and Biostatistics, University of Louisville, Louisville, KY 40202, USA.

View Article

Download full-text PDF

Source
http://dx.doi.org/10.1093/bioinformatics/btm158DOI Listing
July 2007

Incorporation of biological knowledge into distance for clustering genes.

Bioinformation 2007 Apr 10;1(10):396-405. Epub 2007 Apr 10.

Clinical Proteomics Center, University of Louisville, Louisville, KY 40202, USA.

View Article

Download full-text PDF

Source
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC1896054PMC
http://dx.doi.org/10.6026/97320630001396DOI Listing
April 2007

Predicting patient survival from microarray data by accelerated failure time modeling using partial least squares and LASSO.

Biometrics 2007 Mar;63(1):259-71

Department of Bioinformatics and Biostatistics, University of Louisville, Louisville, Kentucky 40202, USA.

View Article

Download full-text PDF

Source
http://dx.doi.org/10.1111/j.1541-0420.2006.00660.xDOI Listing
March 2007

Evaluation of clustering algorithms for gene expression data.

BMC Bioinformatics 2006 Dec 12;7 Suppl 4:S17. Epub 2006 Dec 12.

Department of Bioinformatics and Biostatistics, University of Louisville, Louisville, KY 40202, USA.

View Article

Download full-text PDF

Source
http://dx.doi.org/10.1186/1471-2105-7-S4-S17DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC1780133PMC
December 2006

Methods for evaluating clustering algorithms for gene expression data using a reference set of functional classes.

BMC Bioinformatics 2006 Aug 31;7:397. Epub 2006 Aug 31.

Department of Bioinformatics and Biostatistics, University of Louisville, Louisville, KY 40202, USA.

View Article

Download full-text PDF

Source
http://dx.doi.org/10.1186/1471-2105-7-397DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC1590054PMC
August 2006

Failure to confirm allelic association between markers at the CAPON gene locus and schizophrenia in a British sample.

Biol Psychiatry 2006 Jan 3;59(2):195-7. Epub 2005 Oct 3.

Molecular Psychiatry Laboratory, Department of Mental Health Sciences, Royal Free and University College London Medical School, Windeyer Institute of Medical Sciences, London, W1T 4JF, UK.

View Article

Download full-text PDF

Source
http://dx.doi.org/10.1016/j.biopsych.2005.08.015DOI Listing
January 2006

Empirical Bayes screening of many p-values with applications to microarray studies.

Bioinformatics 2005 May 2;21(9):1987-94. Epub 2005 Feb 2.

Department of Mathematics and Statistics, Department of Biology, Georgia State University, Atlanta, 30303, USA.

View Article

Download full-text PDF

Source
http://bioinformatics.oxfordjournals.org/content/21/9/1987.f
Web Search
http://bioinformatics.oxfordjournals.org/cgi/doi/10.1093/bio
Publisher Site
http://dx.doi.org/10.1093/bioinformatics/bti301DOI Listing
May 2005

The Epsin 4 gene on chromosome 5q, which encodes the clathrin-associated protein enthoprotin, is involved in the genetic susceptibility to schizophrenia.

Am J Hum Genet 2005 May 25;76(5):902-7. Epub 2005 Mar 25.

Molecular Psychiatry Laboratory, Department of Mental Health Sciences, University College London Medical School, Windeyer Institute of Medical Sciences, London, United Kingdom.

View Article

Download full-text PDF

Source
http://dx.doi.org/10.1086/430095DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC1199380PMC
May 2005

An empirical bayes adjustment to increase the sensitivity of detecting differentially expressed genes in microarray experiments.

Bioinformatics 2004 Jan;20(2):235-42

Department of Mathematics and Statistics, Georgia State University, Atlanta, GA 30303, USA.

View Article

Download full-text PDF

Source
http://dx.doi.org/10.1093/bioinformatics/btg396DOI Listing
January 2004

Whole-genome DNA microarray analysis of a hyperthermophile and an archaeon: Pyrococcus furiosus grown on carbohydrates or peptides.

J Bacteriol 2003 Jul;185(13):3935-47

Department of Biochemistry and Molecular Biology and Center for Metalloenzyme Studies, University of Georgia, Athens, Georgia 30602, USA.

View Article

Download full-text PDF

Source
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC161589PMC
http://dx.doi.org/10.1128/jb.185.13.3935-3947.2003DOI Listing
July 2003

Comparisons and validation of statistical clustering techniques for microarray gene expression data.

Bioinformatics 2003 Mar;19(4):459-66

Department of Mathematics and Statistics and Department of Biology, Georgia State University, Atlanta, GA 30303, USA.

View Article

Download full-text PDF

Source
http://dx.doi.org/10.1093/bioinformatics/btg025DOI Listing
March 2003

Genetic mapping of variation in spatial learning in the mouse.

J Neurosci 2003 Mar;23(6):2426-33

Wellcome Trust Centre for Human Genetics, Oxford, OX3 7BN, United Kingdom.

View Article

Download full-text PDF

Source
March 2003