Publications by authors named "Susanna Repo"

17Publications

Reports from CAGI: The Critical Assessment of Genome Interpretation.

Hum Mutat 2017 09;38(9):1039-1041

Department of Plant and Microbial Biology, University of California, Berkeley, California.

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http://dx.doi.org/10.1002/humu.23290DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5606199PMC
September 2017

Association of gut microbiota with post-operative clinical course in Crohn's disease.

BMC Gastroenterol 2013 Aug 22;13:131. Epub 2013 Aug 22.

Department of Medicine, Division of Gastroenterology, University of California, San Francisco, 513 Parnassus Avenue, Room S-357, San Francisco, CA 94143-0538, USA.

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http://dx.doi.org/10.1186/1471-230X-13-131DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3848607PMC
August 2013

A large-scale evaluation of computational protein function prediction.

Authors:
Predrag Radivojac Wyatt T Clark Tal Ronnen Oron Alexandra M Schnoes Tobias Wittkop Artem Sokolov Kiley Graim Christopher Funk Karin Verspoor Asa Ben-Hur Gaurav Pandey Jeffrey M Yunes Ameet S Talwalkar Susanna Repo Michael L Souza Damiano Piovesan Rita Casadio Zheng Wang Jianlin Cheng Hai Fang Julian Gough Patrik Koskinen Petri Törönen Jussi Nokso-Koivisto Liisa Holm Domenico Cozzetto Daniel W A Buchan Kevin Bryson David T Jones Bhakti Limaye Harshal Inamdar Avik Datta Sunitha K Manjari Rajendra Joshi Meghana Chitale Daisuke Kihara Andreas M Lisewski Serkan Erdin Eric Venner Olivier Lichtarge Robert Rentzsch Haixuan Yang Alfonso E Romero Prajwal Bhat Alberto Paccanaro Tobias Hamp Rebecca Kaßner Stefan Seemayer Esmeralda Vicedo Christian Schaefer Dominik Achten Florian Auer Ariane Boehm Tatjana Braun Maximilian Hecht Mark Heron Peter Hönigschmid Thomas A Hopf Stefanie Kaufmann Michael Kiening Denis Krompass Cedric Landerer Yannick Mahlich Manfred Roos Jari Björne Tapio Salakoski Andrew Wong Hagit Shatkay Fanny Gatzmann Ingolf Sommer Mark N Wass Michael J E Sternberg Nives Škunca Fran Supek Matko Bošnjak Panče Panov Sašo Džeroski Tomislav Šmuc Yiannis A I Kourmpetis Aalt D J van Dijk Cajo J F ter Braak Yuanpeng Zhou Qingtian Gong Xinran Dong Weidong Tian Marco Falda Paolo Fontana Enrico Lavezzo Barbara Di Camillo Stefano Toppo Liang Lan Nemanja Djuric Yuhong Guo Slobodan Vucetic Amos Bairoch Michal Linial Patricia C Babbitt Steven E Brenner Christine Orengo Burkhard Rost Sean D Mooney Iddo Friedberg

Nat Methods 2013 Mar 27;10(3):221-7. Epub 2013 Jan 27.

School of Informatics and Computing, Indiana University, Bloomington, Indiana, USA.

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http://dx.doi.org/10.1038/nmeth.2340DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3584181PMC
March 2013

Phylogenetic molecular function annotation.

J Phys Conf Ser 2009 ;180(1):12024

EECS Department, University of California, Berkeley, CA, USA.

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http://dx.doi.org/10.1088/1742-6596/180/1/012024DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2909777PMC
January 2009

Somatic mutations of ErbB4: selective loss-of-function phenotype affecting signal transduction pathways in cancer.

J Biol Chem 2009 Feb 19;284(9):5582-91. Epub 2008 Dec 19.

MediCity Research Laboratory and Department of Medical Biochemistry and Genetics, University of Turku, Turku, Finland.

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http://dx.doi.org/10.1074/jbc.M805438200DOI Listing
February 2009

Ligand specificity of constitutive androstane receptor as probed by induced-fit docking and mutagenesis.

J Med Chem 2008 Nov;51(22):7119-31

Structural Bioinformatics Laboratory, Department of Biochemistry and Pharmacy, Abo Akademi University, Tykistökatu 6, FI-20520 Turku, Finland.

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http://dx.doi.org/10.1021/jm800337rDOI Listing
November 2008

Functional classification of amino acid decarboxylases from the alanine racemase structural family by phylogenetic studies.

Mol Biol Evol 2007 Jan 22;24(1):79-89. Epub 2006 Sep 22.

Department of Biochemistry and Pharmacy, Abo Akademi University, Turku, Finland.

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https://academic.oup.com/mbe/article-lookup/doi/10.1093/molb
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http://dx.doi.org/10.1093/molbev/msl133DOI Listing
January 2007

The major conformational IgE-binding epitopes of hevein (Hev b6.02) are identified by a novel chimera-based allergen epitope mapping strategy.

J Biol Chem 2002 Jun 21;277(25):22656-61. Epub 2002 Mar 21.

Department of Biological and Environmental Science, University of Jyväskylä, P. O. Box 35 (YAB), FIN-40014 University of Jyvaskyla, Finland.

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http://dx.doi.org/10.1074/jbc.M201076200DOI Listing
June 2002