Susanna L Lamers

Susanna L Lamers

Susanna L Lamers

Susanna L Lamers

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Emerging Patterns in HIV-1 gp120 Variable Domains in Anatomical Tissues in the Absence of a Plasma Viral Load.

AIDS Res Hum Retroviruses 2019 Jun 10;35(6):588-596. Epub 2019 Apr 10.

6 Departments of Laboratory Medicine, Pathology and Medicine, The University of California at San Francisco, San Francisco, California.

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http://dx.doi.org/10.1089/AID.2018.0267DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6588100PMC
June 2019

Complex patterns of Hepatitis-C virus longitudinal clustering in a high-risk population.

Infect Genet Evol 2018 03 16;58:77-82. Epub 2017 Dec 16.

Department of Medicine, Johns Hopkins University, Baltimore, MD, United States; NIAID, NIH, Baltimore, MD, United States. Electronic address:

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http://dx.doi.org/10.1016/j.meegid.2017.12.015DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5807204PMC
March 2018

Eradication of HIV from Tissue Reservoirs: Challenges for the Cure.

AIDS Res Hum Retroviruses 2018 01 7;34(1):3-8. Epub 2017 Aug 7.

5 The AIDS and Cancer Specimen Resource , San Francisco, California.

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http://www.liebertpub.com/doi/10.1089/aid.2017.0072
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http://dx.doi.org/10.1089/AID.2017.0072DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5771544PMC
January 2018

The Spleen Is an HIV-1 Sanctuary During Combined Antiretroviral Therapy.

AIDS Res Hum Retroviruses 2018 01 30;34(1):123-125. Epub 2017 Nov 30.

5 The AIDS and Cancer Specimen Resource, University of California San Francisco , San Francisco, California.

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http://dx.doi.org/10.1089/AID.2017.0254DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5771542PMC
January 2018

Low Rates of Transmitted Drug Resistance Among Newly Identified HIV-1 Seroconverters in Rural Rakai, Uganda.

AIDS Res Hum Retroviruses 2017 05 28;33(5):448-451. Epub 2016 Nov 28.

1 Division of Intramural Research, National Institute of Allergy and Infectious Diseases, National Institutes of Health , Bethesda, Maryland.

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http://dx.doi.org/10.1089/AID.2015.0370DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5439436PMC
May 2017

Identifying Transmission Clusters with Cluster Picker and HIV-TRACE.

AIDS Res Hum Retroviruses 2017 03 13;33(3):211-218. Epub 2016 Dec 13.

5 Laboratory of Immunoregulation, Division of Intramural Research, National Institute of Allergy and Infectious Diseases, National Institutes of Health , Bethesda, Maryland.

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http://dx.doi.org/10.1089/AID.2016.0205DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5333565PMC
March 2017

HIV Maintains an Evolving and Dispersed Population in Multiple Tissues during Suppressive Combined Antiretroviral Therapy in Individuals with Cancer.

J Virol 2016 10 29;90(20):8984-93. Epub 2016 Sep 29.

The AIDS and Cancer Specimen Resource, University of California at San Francisco, San Francisco, California, USA Departments of Laboratory Medicine, Pathology, and Medicine, University of California at San Francisco, San Francisco, California, USA

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http://dx.doi.org/10.1128/JVI.00684-16DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5044847PMC
October 2016

HIV DNA Is Frequently Present within Pathologic Tissues Evaluated at Autopsy from Combined Antiretroviral Therapy-Treated Patients with Undetectable Viral Loads.

J Virol 2016 10 29;90(20):8968-83. Epub 2016 Sep 29.

National Neurological AIDS Bank, Department of Neurology, David Geffen School of Medicine, University of California at Los Angeles, Los Angeles, California, USA David Geffen School of Medicine and Olive View-UCLA Medical Center, Department of Neurology, Los Angeles, California, USA.

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http://jvi.asm.org/content/90/20/8968.full.pdf
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http://dx.doi.org/10.1128/JVI.00674-16DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5044815PMC
October 2016

Correction for Rife et al., Evolution of Neuroadaptation in the Periphery and Purifying Selection in the Brain Contribute to Compartmentalization of Simian Immunodeficiency Virus (SIV) in the Brains of Rhesus Macaques with SIV-Associated Encephalitis.

J Virol 2016 10 12;90(19):8947. Epub 2016 Sep 12.

Department of Pathology, Immunology, and Laboratory Medicine, University of Florida, Gainesville, Florida, USA Emerging Pathogens Institute, University of Florida, Gainesville, Florida, USA.

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http://dx.doi.org/10.1128/JVI.01304-16DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5021433PMC
October 2016

HIV-1 Sequence Data Coverage in Central East Africa from 1959 to 2013.

AIDS Res Hum Retroviruses 2016 09 2;32(9):904-8. Epub 2016 Aug 2.

5 Department of Epidemiology, Bloomberg School of Public Health, Johns Hopkins University , Baltimore, Maryland.

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http://www.liebertpub.com/doi/10.1089/aid.2016.0079
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http://dx.doi.org/10.1089/AID.2016.0079DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5028903PMC
September 2016

HIV-1 Evolutionary Patterns Associated with Metastatic Kaposi's Sarcoma during AIDS.

Sarcoma 2016 29;2016:4510483. Epub 2016 Aug 29.

The AIDS and Cancer Specimen Resource, University of California at San Francisco and the Department of Laboratory Medicine, Pathology, and Medicine, University of California at San Francisco, 1001 Poterero Ave, Bldg 3, Rm 207, UCSF Box 1317, San Francisco, CA 94110, USA.

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http://dx.doi.org/10.1155/2016/4510483DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5019946PMC
September 2016

On the Physicochemical and Structural Modifications Associated with HIV-1 Subtype B Tropism Transition.

AIDS Res Hum Retroviruses 2016 08 1;32(8):829-40. Epub 2016 Jun 1.

4 Department of Laboratory Medicine, Pathology, and Medicine, and the AIDS and Cancer Specimen Resource, University of California , San Francisco, California.

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http://dx.doi.org/10.1089/AID.2015.0373DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4971420PMC
August 2016

The meningeal lymphatic system: a route for HIV brain migration?

J Neurovirol 2016 06 16;22(3):275-81. Epub 2015 Nov 16.

University of California and the AIDS and Cancer Specimen Resource, San Francisco, CA, USA.

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http://dx.doi.org/10.1007/s13365-015-0399-yDOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4868798PMC
June 2016

Identification of dual-tropic HIV-1 using evolved neural networks.

Biosystems 2015 Nov 28;137:12-9. Epub 2015 Sep 28.

University of California at San Francisco, Department of Laboratory Medicine and The AIDS and Cancer Specimen Resource, San Francisco, CA 94143, United States.

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http://dx.doi.org/10.1016/j.biosystems.2015.09.007DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4921197PMC
November 2015

Global Diversity within and between Human Herpesvirus 1 and 2 Glycoproteins.

J Virol 2015 Aug 27;89(16):8206-18. Epub 2015 May 27.

Laboratory of Immunoregulation, National Institute of Allergy and Infectious Diseases, National Institutes of Health, Bethesda, Maryland, USA Department of Medicine, Mount Auburn Hospital, Cambridge, Massachusetts, USA.

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http://jvi.asm.org/content/89/16/8206.full.pdf
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http://jvi.asm.org/content/early/2015/05/22/JVI.01302-15.ful
Web Search
http://jvi.asm.org/lookup/doi/10.1128/JVI.01302-15
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http://dx.doi.org/10.1128/JVI.01302-15DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4524236PMC
August 2015

Tracking the Emergence of Host-Specific Simian Immunodeficiency Virus env and nef Populations Reveals nef Early Adaptation and Convergent Evolution in Brain of Naturally Progressing Rhesus Macaques.

J Virol 2015 Aug 3;89(16):8484-96. Epub 2015 Jun 3.

Department of Pathology, Immunology, and Laboratory Medicine, University of Florida, Gainesville, Florida, USA Emerging Pathogens Institute, University of Florida, Gainesville, Florida, USA

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http://dx.doi.org/10.1128/JVI.01010-15DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4524235PMC
August 2015

Spatiotemporal dynamics of simian immunodeficiency virus brain infection in CD8+ lymphocyte-depleted rhesus macaques with neuroAIDS.

J Gen Virol 2014 Dec 9;95(Pt 12):2784-95. Epub 2014 Sep 9.

Department of Pathology, Immunology, and Laboratory Medicine, University of Florida, Gainesville, FL, USA Emerging Pathogens Institute, University of Florida, Gainesville, FL, USA

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http://dx.doi.org/10.1099/vir.0.070318-0DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4233634PMC
December 2014

HIV-associated neuropathogenesis: a systems biology perspective for modeling and therapy.

Biosystems 2014 May 13;119:53-61. Epub 2014 Apr 13.

University of Florida, 2055 Mowry Road, Department of Pathology and Laboratory Medicine, Gainesville, FL 32610, USA. Electronic address:

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http://dx.doi.org/10.1016/j.biosystems.2014.04.002DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4112533PMC
May 2014

HIV-1 nef protein structures associated with brain infection and dementia pathogenesis.

PLoS One 2011 Feb 9;6(2):e16659. Epub 2011 Feb 9.

Polytechnic Institute of New York University, New York, New York, United States of America.

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http://journals.plos.org/plosone/article?id=10.1371/journal.pone.0016659PLOS
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3036659PMC
February 2011

HIV-1 nef protein visits B-cells via macrophage nanotubes: a mechanism for AIDS-related lymphoma pathogenesis?

Curr HIV Res 2010 Dec;8(8):638-40

Polytechnic Institute of New York University, Brooklyn, NY, USA.

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http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3471533PMC
December 2010

HIV-miR-H1 evolvability during HIV pathogenesis.

Biosystems 2010 Aug 31;101(2):88-96. Epub 2010 May 31.

BioInfoExperts, Thibodaux, LA 70302, USA.

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http://dx.doi.org/10.1016/j.biosystems.2010.05.001DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3478900PMC
August 2010

Distinct patterns of HIV-1 evolution within metastatic tissues in patients with non-Hodgkins lymphoma.

PLoS One 2009 Dec 3;4(12):e8153. Epub 2009 Dec 3.

Department of Pathology Immunology and Laboratory Medicine, University of Florida, Gainesville, Florida, United States of America.

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http://journals.plos.org/plosone/article?id=10.1371/journal.pone.0008153PLOS
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2780293PMC
December 2009

Geographic HIV type 1 subtype distribution in Rakai district, Uganda.

AIDS Res Hum Retroviruses 2009 Oct;25(10):1045-8

Laboratory of Immunoregulation, Division of Intramural Research, National Institute of Allergy and Infectious Diseases, National Institutes of Health, Baltimore, MD 21205, USA.

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http://dx.doi.org/10.1089/aid.2009.0127DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2785855PMC
October 2009

High level HIV-1 DNA concentrations in brain tissues differentiate patients with post-HAART AIDS dementia complex or cardiovascular disease from those with AIDS.

Sci China C Life Sci 2009 Jul 30;52(7):651-6. Epub 2009 Jul 30.

Department of Laboratory Science of Virology, School of Public Health, Shandong University, Jinan, 250012, China.

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http://link.springer.com/10.1007/s11427-009-0085-5
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http://dx.doi.org/10.1007/s11427-009-0085-5DOI Listing
July 2009

Prediction of R5, X4, and R5X4 HIV-1 coreceptor usage with evolved neural networks.

IEEE/ACM Trans Comput Biol Bioinform 2008 Apr-Jun;5(2):291-300

BioInfoExperts, Gainesville, FL 32606, USA.

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http://dx.doi.org/10.1109/TCBB.2007.1074DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3523352PMC
July 2008