Susana Campino

Susana Campino

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Susana Campino

Susana Campino

Publications by authors named "Susana Campino"

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Using genomics to understand the origin and dispersion of multidrug and extensively drug resistant tuberculosis in Portugal.

Sci Rep 2020 Feb 13;10(1):2600. Epub 2020 Feb 13.

Research Institute for Medicines (iMed.ULisboa), Faculdade de Farmácia, Universidade de Lisboa, Lisboa, Portugal.

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http://dx.doi.org/10.1038/s41598-020-59558-3DOI Listing
February 2020

Machine Learning Predicts Accurately Drug Resistance From Whole Genome Sequencing Data.

Front Genet 2019 26;10:922. Epub 2019 Sep 26.

Faculties of Epidemiology & Population Health and Infectious & Tropical Diseases, London School of Hygiene & Tropical Medicine, London, United Kingdom.

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http://dx.doi.org/10.3389/fgene.2019.00922DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6775242PMC
September 2019

SV-Pop: population-based structural variant analysis and visualization.

BMC Bioinformatics 2019 Mar 13;20(1):136. Epub 2019 Mar 13.

Department of Pathogen Molecular Biology, London School of Hygiene and Tropical Medicine, London, WC1E 7HT, UK.

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http://dx.doi.org/10.1186/s12859-019-2718-4DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6417133PMC
March 2019

PrimedRPA: primer design for recombinase polymerase amplification assays.

Bioinformatics 2019 02;35(4):682-684

Pathogen Molecular Biology Department, London School of Hygiene and Tropical Medicine (LSHTM), London, UK.

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http://dx.doi.org/10.1093/bioinformatics/bty701DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6379019PMC
February 2019

A reference genome and methylome for the Plasmodium knowlesi A1-H.1 line.

Int J Parasitol 2018 03 16;48(3-4):191-196. Epub 2017 Dec 16.

Faculty of Infectious and Tropical Diseases, London School of Hygiene and Tropical Medicine, London, United Kingdom; Faculty of Epidemiology and Population Health, London School of Hygiene and Tropical Medicine, London, United Kingdom. Electronic address:

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http://dx.doi.org/10.1016/j.ijpara.2017.09.008DOI Listing
March 2018

The role of the red blood cell in host defence against falciparum malaria: an expanding repertoire of evolutionary alterations.

Br J Haematol 2017 11 23;179(4):543-556. Epub 2017 Aug 23.

MRC International Nutrition Group at Keneba, MRC Unit The Gambia, Banjul, The Gambia.

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http://dx.doi.org/10.1111/bjh.14886DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5922454PMC
November 2017

Genetic diversity of next generation antimalarial targets: A baseline for drug resistance surveillance programmes.

Int J Parasitol Drugs Drug Resist 2017 08 9;7(2):174-180. Epub 2017 Mar 9.

Faculty of Infectious and Tropical Diseases, London School of Hygiene and Tropical Medicine, London, UK. Electronic address:

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http://dx.doi.org/10.1016/j.ijpddr.2017.03.001DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5379905PMC
August 2017

Characterisation of the opposing effects of G6PD deficiency on cerebral malaria and severe malarial anaemia.

Elife 2017 01 9;6. Epub 2017 Jan 9.

Wellcome Trust Centre for Human Genetics, University of Oxford, Oxford, United Kingdom.

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http://dx.doi.org/10.7554/eLife.15085DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5222559PMC
January 2017

The variability and reproducibility of whole genome sequencing technology for detecting resistance to anti-tuberculous drugs.

Genome Med 2016 12 22;8(1):132. Epub 2016 Dec 22.

Department of Pathogen Molecular Biology, Faculty of Infectious and Tropical Diseases, London School of Hygiene & Tropical Medicine, Keppel Street, WC1E 7HT, London, UK.

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http://dx.doi.org/10.1186/s13073-016-0385-xDOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5178084PMC
December 2016

PhyTB: Phylogenetic tree visualisation and sample positioning for M. tuberculosis.

BMC Bioinformatics 2015 May 13;16:155. Epub 2015 May 13.

Faculty of Infectious and Tropical Diseases, London School of Hygiene & Tropical Medicine, Keppel St, London, UK.

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http://dx.doi.org/10.1186/s12859-015-0603-3DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4429496PMC
May 2015

K13-propeller polymorphisms in Plasmodium falciparum parasites from sub-Saharan Africa.

J Infect Dis 2015 Apr 2;211(8):1352-5. Epub 2014 Nov 2.

Wellcome Trust Sanger Institute, Hinxton Malaria Research and Training Centre, Department of Epidemiology of Parasitic Diseases, Faculty of Pharmacy, University of Science, Techniques and Technologies of Bamako, Mali.

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http://dx.doi.org/10.1093/infdis/jiu608DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4827505PMC
April 2015

Optimized whole-genome amplification strategy for extremely AT-biased template.

DNA Res 2014 Dec 19;21(6):661-71. Epub 2014 Sep 19.

Wellcome Trust Sanger Institute, Hinxton, UK MRC Centre for Genomics and Global Health, University of Oxford, Oxford OX3 7BN, UK Wellcome Trust Centre for Human Genetics, University of Oxford, Oxford OX3 7BN, UK.

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http://dx.doi.org/10.1093/dnares/dsu028DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4263299PMC
December 2014

Glucose-6-phosphate dehydrogenase polymorphisms and susceptibility to mild malaria in Dogon and Fulani, Mali.

Malar J 2014 Jul 11;13:270. Epub 2014 Jul 11.

Malaria Research and Training Centre, Department of Epidemiology of Parasitic Diseases, Faculty of Medicine, Pharmacy and Odonto - Stomatology, USTTB, BP 1805 Bamako, Mali.

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http://dx.doi.org/10.1186/1475-2875-13-270DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4110528PMC
July 2014

Human candidate polymorphisms in sympatric ethnic groups differing in malaria susceptibility in Mali.

PLoS One 2013 2;8(10):e75675. Epub 2013 Oct 2.

Malaria Research and Training Center / Department of Epidemiology of Parasitic Diseases / Faculty of Medicine, Pharmacy and Odonto - Stomatology, BP 1805, Bamako, USTTB, Mali ; Department of Molecular Biosciences, The Wenner-Gren Institute, Stockholm University, Stockholm, Sweden.

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http://journals.plos.org/plosone/article?id=10.1371/journal.pone.0075675PLOS
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3788813PMC
June 2014

estMOI: estimating multiplicity of infection using parasite deep sequencing data.

Bioinformatics 2014 May 17;30(9):1292-4. Epub 2014 Jan 17.

London School of Hygiene and Tropical Medicine, WC1E 7HT, London, UK, Wellcome Trust Sanger Institute, CB10 1SA, Hinxton, UK and Malawi-Liverpool-Wellcome Trust Clinical Research Programme, Box 30096 BT3, Blantyre, Malawia.

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https://academic.oup.com/bioinformatics/article-lookup/doi/1
Publisher Site
http://dx.doi.org/10.1093/bioinformatics/btu005DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3998131PMC
May 2014

A transcriptional switch underlies commitment to sexual development in malaria parasites.

Nature 2014 Mar 23;507(7491):248-52. Epub 2014 Feb 23.

1] Lewis-Sigler Institute for Integrative Genomics, Princeton University, Princeton, New Jersey 08544, USA [2] Department of Molecular Biology, Princeton University, Princeton, New Jersey 08544, USA [3] Division of Basic Sciences, Fred Hutchinson Cancer Research Center, Seattle, Washington 98109, USA (B.F.C.K.); Department of Molecular Biology and Center for Infectious Disease Dynamics, The Pennsylvania State University, State College, Pennsylvania 16802, USA (V.M.C., M.L.).

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http://dx.doi.org/10.1038/nature12920DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4040541PMC
March 2014

VarB: a variation browsing and analysis tool for variants derived from next-generation sequencing data.

Bioinformatics 2012 Nov 13;28(22):2983-5. Epub 2012 Sep 13.

Faculties of Epidemiology & Population Health and Infectious & Tropical Diseases, London School of Hygiene and Tropical Medicine, London WC1E 7HT, UK.

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http://dx.doi.org/10.1093/bioinformatics/bts557DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3496337PMC
November 2012

SnoopCGH: software for visualizing comparative genomic hybridization data.

Bioinformatics 2009 Oct 16;25(20):2732-3. Epub 2009 Aug 16.

Wellcome Trust Sanger Institute, Hinxton, The Weatherall Institute of Molecular Medicine and Wellcome Trust Centre for Human Genetics, University of Oxford, Oxford, UK.

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https://academic.oup.com/bioinformatics/article-lookup/doi/1
Publisher Site
http://dx.doi.org/10.1093/bioinformatics/btp488DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2759554PMC
October 2009

Genome-wide and fine-resolution association analysis of malaria in West Africa.

Nat Genet 2009 Jun 24;41(6):657-65. Epub 2009 May 24.

MRC Laboratories, Fajara, Banjul, Gambia.

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http://dx.doi.org/10.1038/ng.388DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2889040PMC
June 2009

Localization of a long-range cis-regulatory element of IL13 by allelic transcript ratio mapping.

Genome Res 2007 Jan 29;17(1):82-7. Epub 2006 Nov 29.

Department of Paediatrics, Oxford University, Oxford OX3 7BN, United Kingdom.

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http://dx.doi.org/10.1101/gr.5663007DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC1716271PMC
January 2007

Mendelian and complex genetics of susceptibility and resistance to parasitic infections.

Semin Immunol 2006 Dec 4;18(6):411-22. Epub 2006 Oct 4.

Wellcome Trust Centre for Human Genetics, University of Oxford, Roosevelt Drive, Oxford OX3 7BN, UK.

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http://dx.doi.org/10.1016/j.smim.2006.07.011DOI Listing
December 2006

Prevention of diabetes in nonobese diabetic mice mediated by CD1d-restricted nonclassical NKT cells.

J Immunol 2004 Sep;173(5):3112-8

Department of Medical Biosciences, Medical and Clinical Genetics, Umeå University, Umeå, Sweden.

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http://dx.doi.org/10.4049/jimmunol.173.5.3112DOI Listing
September 2004

Identification of two cerebral malaria resistance loci using an inbred wild-derived mouse strain.

Proc Natl Acad Sci U S A 2002 Jul 11;99(15):9919-23. Epub 2002 Jul 11.

Unité Immunophysiopathologie Infectieuse, Institut Pasteur, Centre National de la Recherche Scientifique, Unité de Recherche Associée 1961, and Université Pierre et Marie Curie, 75005 Paris, France.

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http://dx.doi.org/10.1073/pnas.152215199DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC126600PMC
July 2002