Susan V Lynch

Susan V Lynch

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Susan V Lynch

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Fecal Microbiota Transplantation in Pouchitis: Clinical, Endoscopic, Histologic, and Microbiota Results from a Pilot Study.

Dig Dis Sci 2020 Apr 13;65(4):1099-1106. Epub 2019 Jul 13.

Division of Gastroenterology, Department of Medicine, University of California, San Francisco, San Francisco, CA, USA.

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http://dx.doi.org/10.1007/s10620-019-05715-2DOI Listing
April 2020

Translating the gut microbiome: ready for the clinic?

Nat Rev Gastroenterol Hepatol 2019 11 27;16(11):656-661. Epub 2019 Sep 27.

Department of Internal Medicine I, Gastroenterology, Hepatology, Endocrinology and Metabolism, Medical University Innsbruck, Innsbruck, Austria.

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http://dx.doi.org/10.1038/s41575-019-0204-0DOI Listing
November 2019

Heterogeneity of Microbiota Dysbiosis in Chronic Rhinosinusitis: Potential Clinical Implications and Microbial Community Mechanisms Contributing to Sinonasal Inflammation.

Front Cell Infect Microbiol 2018 23;8:168. Epub 2018 May 23.

Department of Biological Sciences, Pathogen and Microbiome Institute, Northern Arizona University, Flagstaff, AZ, United States.

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https://www.frontiersin.org/article/10.3389/fcimb.2018.00168
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http://dx.doi.org/10.3389/fcimb.2018.00168DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5974464PMC
July 2019

Community ecology as a framework for human microbiome research.

Nat Med 2019 06 27;25(6):884-889. Epub 2019 May 27.

Division of Gastroenterology, Department of Medicine, University of California, San Francisco, San Francisco, CA, USA.

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http://www.nature.com/articles/s41591-019-0464-9
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http://dx.doi.org/10.1038/s41591-019-0464-9DOI Listing
June 2019

Motility and biofilm formation of the emerging gastrointestinal pathogen Campylobacter concisus differs under microaerophilic and anaerobic environments.

Gut Microbes 2019 25;10(1):34-44. Epub 2018 Sep 25.

a Department of Medicine, Division of Gastroenterology , University of California San Francisco , San Francisco , CA , USA.

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http://dx.doi.org/10.1080/19490976.2018.1472201DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6363072PMC
April 2019

The gut microbiome: Relationships with disease and opportunities for therapy.

J Exp Med 2019 01 15;216(1):20-40. Epub 2018 Oct 15.

Division of Gastroenterology, Department of Medicine, University of California, San Francisco, San Francisco, CA

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http://dx.doi.org/10.1084/jem.20180448DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6314516PMC
January 2019

Gut Microbial Metabolism and Nonalcoholic Fatty Liver Disease.

Hepatol Commun 2019 Jan 3;3(1):29-43. Epub 2018 Dec 3.

Department of Medicine, Division of Gastroenterology University of California San Francisco San Francisco CA.

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http://doi.wiley.com/10.1002/hep4.1284
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http://dx.doi.org/10.1002/hep4.1284DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6312661PMC
January 2019

Rules of engagement in the gut microbiome.

Nat Med 2018 11;24(11):1642-1644

Division of Gastroenterology, Department of Medicine, University of California, San Francisco, San Francisco, CA, USA.

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http://dx.doi.org/10.1038/s41591-018-0242-0DOI Listing
November 2018

Current understanding of the human microbiome.

Nat Med 2018 04;24(4):392-400

Department of Pediatrics, School of Medicine, University of California San Diego, La Jolla, California, USA.

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http://dx.doi.org/10.1038/nm.4517DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC7043356PMC
April 2018

Delayed gut microbiota development in high-risk for asthma infants is temporarily modifiable by Lactobacillus supplementation.

Nat Commun 2018 02 16;9(1):707. Epub 2018 Feb 16.

Division of Gastroenterology, Department of Medicine, University of California San Francisco, San Francisco, CA, 94143, USA.

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http://dx.doi.org/10.1038/s41467-018-03157-4DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5816017PMC
February 2018

Role of the lung microbiome in HIV pathogenesis.

Curr Opin HIV AIDS 2018 Jan;13(1):45-52

Division of Gastroenterology, Department of Medicine, University of California, San Francisco (UCSF), San Francisco, California, USA.

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http://dx.doi.org/10.1097/COH.0000000000000427DOI Listing
January 2018

Limited engraftment of donor microbiome via one-time fecal microbial transplantation in treated HIV-infected individuals.

Gut Microbes 2017 09 25;8(5):440-450. Epub 2017 May 25.

c Division of Gastroenterology , University of California , San Francisco, San Francisco , CA , United States.

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http://dx.doi.org/10.1080/19490976.2017.1334034DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5628639PMC
September 2017

Breast Milk Transforming Growth Factor β Is Associated With Neonatal Gut Microbial Composition.

J Pediatr Gastroenterol Nutr 2017 09;65(3):e60-e67

*Department of Public Health Sciences, Henry Ford Health System, Detroit, MI †Division of Gastroenterology, University of California, San Francisco, CA ‡Department of Internal Medicine, Division of Allergy and Immunology, Henry Ford Health System, Detroit, MI §Department of Pediatrics, Georgia Regents University, Augusta, GA.

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http://Insights.ovid.com/crossref?an=00005176-201709000-0002
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http://dx.doi.org/10.1097/MPG.0000000000001585DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5596927PMC
September 2017

Promotion of Epithelial Barrier Integrity Via Probiotic-derived Products.

J Pediatr Gastroenterol Nutr 2017 03;64(3):335-336

Division of Gastroenterology, Department of Medicine, University of California San Francisco, San Francisco.

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http://dx.doi.org/10.1097/MPG.0000000000001350DOI Listing
March 2017

A chronic rhinosinusitis-derived isolate of Pseudomonas aeruginosa induces acute and pervasive effects on the murine upper airway microbiome and host immune response.

Int Forum Allergy Rhinol 2016 12 6;6(12):1229-1237. Epub 2016 Sep 6.

Division of Division of Gastroenterology, Department of Medicine, University of California, San Francisco, San Francisco, CA.

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http://doi.wiley.com/10.1002/alr.21819
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http://dx.doi.org/10.1002/alr.21819DOI Listing
December 2016

The Human Intestinal Microbiome in Health and Disease.

N Engl J Med 2016 Dec;375(24):2369-2379

From the Division of Gastroenterology, Department of Medicine, University of California, San Francisco, San Francisco (S.V.L.); and the Novo Nordisk Foundation Center for Basic Metabolic Research, Faculty of Health and Medical Science, University of Copenhagen, Copenhagen (O.P.).

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http://dx.doi.org/10.1056/NEJMra1600266DOI Listing
December 2016

The Lung Microbiome and Airway Disease.

Authors:
Susan V Lynch

Ann Am Thorac Soc 2016 12;13 Suppl 2:S462-S465

Division of Gastroenterology, Department of Medicine, University of California San Francisco, San Francisco, California.

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http://dx.doi.org/10.1513/AnnalsATS.201605-356AWDOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5291470PMC
December 2016

Disease Severity and Immune Activity Relate to Distinct Interkingdom Gut Microbiome States in Ethnically Distinct Ulcerative Colitis Patients.

mBio 2016 08 16;7(4). Epub 2016 Aug 16.

Division of Gastroenterology, Department of Medicine, University of California, San Francisco, San Francisco, California, USA

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http://dx.doi.org/10.1128/mBio.01072-16DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4992973PMC
August 2016

Nasopharyngeal microbiota composition of children is related to the frequency of upper respiratory infection and acute sinusitis.

Microbiome 2016 07 1;4(1):34. Epub 2016 Jul 1.

Division of Gastroenterology, Department of Medicine, University of California San Francisco, San Francisco, CA, 94143, USA.

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http://dx.doi.org/10.1186/s40168-016-0179-9DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4929776PMC
July 2016

Airway Microbiota and the Implications of Dysbiosis in Asthma.

Curr Allergy Asthma Rep 2016 07;16(8):52

Department of Medicine, Division of Gastroenterology, University of California, San Francisco, CA, USA.

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http://dx.doi.org/10.1007/s11882-016-0631-8DOI Listing
July 2016

Clinical Features, Virus Identification, and Sinusitis as a Complication of Upper Respiratory Tract Illness in Children Ages 4-7 Years.

J Pediatr 2016 Apr 16;171:133-9.e1. Epub 2016 Jan 16.

Department of Pediatrics, University of Wisconsin School of Medicine and Public Health, Madison, WI.

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http://dx.doi.org/10.1016/j.jpeds.2015.12.034DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4808614PMC
April 2016

The microbiome and development of allergic disease.

Curr Opin Allergy Clin Immunol 2016 Apr;16(2):165-71

aDivision of Gastroenterology bDivision of Pulmonary/Critical Care and Allergy/Immunology, Department of Medicine, University of California San Francisco, San Francisco, California, USA.

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http://dx.doi.org/10.1097/ACI.0000000000000255DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5378446PMC
April 2016

Use of 16S rRNA gene for identification of a broad range of clinically relevant bacterial pathogens.

PLoS One 2015 6;10(2):e0117617. Epub 2015 Feb 6.

University of California San Francisco, Department of Medicine, Gastroenterology Division, 513 Parnassus Ave, San Francisco, CA 94143-0538, United States of America.

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http://journals.plos.org/plosone/article?id=10.1371/journal.pone.0117617PLOS
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4319838PMC
March 2016

Gut Microbiota and Allergic Disease. New Insights.

Authors:
Susan V Lynch

Ann Am Thorac Soc 2016 Mar;13 Suppl 1:S51-4

Division of Gastroenterology, University of California San Francisco, San Francisco, California.

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http://dx.doi.org/10.1513/AnnalsATS.201507-451MGDOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5015732PMC
March 2016

The airway microbiome in patients with severe asthma: Associations with disease features and severity.

J Allergy Clin Immunol 2015 Oct 26;136(4):874-84. Epub 2015 Jul 26.

Division of Pulmonary, Critical Care, Allergy & Sleep Medicine, University of California San Francisco, San Francisco, Calif.

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http://dx.doi.org/10.1016/j.jaci.2015.05.044DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4600429PMC
October 2015

Influence and effect of the human microbiome in allergy and asthma.

Curr Opin Rheumatol 2015 Jul;27(4):373-80

Division of Gastroenterology, Department of Medicine, University of California San Francisco, San Francisco, California, USA.

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http://content.wkhealth.com/linkback/openurl?sid=WKPTLP:land
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http://dx.doi.org/10.1097/BOR.0000000000000191DOI Listing
July 2015

Microbiota in allergy and asthma and the emerging relationship with the gut microbiome.

Cell Host Microbe 2015 May;17(5):592-602

Division of Gastroenterology, Department of Medicine, University of California, San Francisco, 513 Parnassus Avenue, San Francisco, CA 94143, USA. Electronic address:

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http://dx.doi.org/10.1016/j.chom.2015.04.007DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4443817PMC
May 2015

Fecal Microbiota Transplantation for Recurrent Clostridium difficile Infection in Pediatric Patients: Encouragement Wrapped in Caution.

Authors:
Susan V Lynch

J Pediatr Gastroenterol Nutr 2015 Jan;60(1):1-3

Division of Gastroenterology, Department of Medicine, University of California, San Francisco.

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http://dx.doi.org/10.1097/MPG.0000000000000612DOI Listing
January 2015

Breast-fed and bottle-fed infant rhesus macaques develop distinct gut microbiotas and immune systems.

Sci Transl Med 2014 Sep;6(252):252ra120

California National Primate Research Center, University of California, Davis, Davis, CA 95616, USA. Department of Medical Microbiology and Immunology, University of California, Davis, Davis, CA 95616, USA. Division of Experimental Medicine, Department of Medicine, University of California, San Francisco, San Francisco, CA 94143, USA.

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http://dx.doi.org/10.1126/scitranslmed.3008791DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4362692PMC
September 2014

Fecal microbial therapy: promises and pitfalls.

J Pediatr Gastroenterol Nutr 2014 Aug;59(2):157-61

*Department of Family Medicine, Georgetown University Medical Center, Washington, DC †Division of Gastroenterology, Department of Medicine, University of California, San Francisco.

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http://dx.doi.org/10.1097/MPG.0000000000000415DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4669049PMC
August 2014

Airway microbiome dynamics in exacerbations of chronic obstructive pulmonary disease.

J Clin Microbiol 2014 Aug 21;52(8):2813-23. Epub 2014 May 21.

Division of Gastroenterology, Department of Medicine, University of California, San Francisco, San Francisco, California, USA.

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http://dx.doi.org/10.1128/JCM.00035-14DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4136157PMC
August 2014

Amelioration of DSS-induced murine colitis by VSL#3 supplementation is primarily associated with changes in ileal microbiota composition.

Gut Microbes 2014 Jul 4;5(4):494-503. Epub 2014 Aug 4.

Division of Gastroenterology, Department of Medicine, University of California, San Francisco, CA.

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http://dx.doi.org/10.4161/gmic.32147DOI Listing
July 2014

House dust exposure mediates gut microbiome Lactobacillus enrichment and airway immune defense against allergens and virus infection.

Proc Natl Acad Sci U S A 2014 Jan 16;111(2):805-10. Epub 2013 Dec 16.

Divisions of Gastroenterology and Pulmonary and Critical Care Medicine, University of California, San Francisco, CA 94143.

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http://dx.doi.org/10.1073/pnas.1310750111DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3896155PMC
January 2014

Viruses and microbiome alterations.

Authors:
Susan V Lynch

Ann Am Thorac Soc 2014 Jan;11 Suppl 1:S57-60

1 Division of Gastroenterology, University of California San Francisco, San Francisco, California.

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http://dx.doi.org/10.1513/AnnalsATS.201306-158MGDOI Listing
January 2014

Probiotic strategies for treatment of respiratory diseases.

Trends Microbiol 2013 Sep 23;21(9):485-92. Epub 2013 May 23.

Division of Gastroenterology, Department of Medicine, University of California, San Francisco, 513 Parnassus Avenue, San Francisco, CA 94143, USA.

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http://dx.doi.org/10.1016/j.tim.2013.04.008DOI Listing
September 2013

Cystic fibrosis transmembrane conductance regulator knockout mice exhibit aberrant gastrointestinal microbiota.

Gut Microbes 2013 Jan-Feb;4(1):41-7. Epub 2012 Oct 12.

Colitis and Crohn's Disease Center, Division of Gastroenterology, Department of Medicine University of California, San Francisco, San Francisco, CA, USA.

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http://dx.doi.org/10.4161/gmic.22430DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3555885PMC
July 2013

The cystic fibrosis airway microbiome.

Cold Spring Harb Perspect Med 2013 Mar 1;3(3):a009738. Epub 2013 Mar 1.

Colitis and Crohn's Disease Microbiome Research Center, Division of Gastroenterology, Department of Medicine, University of California, San Francisco, San Francisco, CA 94143, USA.

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http://dx.doi.org/10.1101/cshperspect.a009738DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3579208PMC
March 2013

Gut dysbiosis in cystic fibrosis.

J Cyst Fibros 2012 Sep 24;11(5):454-5. Epub 2012 Apr 24.

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http://dx.doi.org/10.1016/j.jcf.2012.03.007DOI Listing
September 2012

Oral and airway microbiota in HIV-infected pneumonia patients.

J Clin Microbiol 2012 Sep 3;50(9):2995-3002. Epub 2012 Jul 3.

University of California San Francisco, San Francisco, California, USA.

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http://dx.doi.org/10.1128/JCM.00278-12DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3421777PMC
September 2012

Role of the microbiota in inflammatory bowel diseases.

Inflamm Bowel Dis 2012 May 20;18(5):968-84. Epub 2011 Sep 20.

Colitis and Crohn's Disease Microbiome Research Core, Division of Gastroenterology, University of California, San Francisco, Calfornia 94143-0538, USA.

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http://dx.doi.org/10.1002/ibd.21866DOI Listing
May 2012

Significance of the microbiome in obstructive lung disease.

Thorax 2012 May 8;67(5):456-63. Epub 2012 Feb 8.

Division of Pulmonary and Critical Care Medicine, University of Michigan Health System, 3916 Taubman Center, Box 5360, 1500 E. Medical Center Drive, Ann Arbor, MI 48109-5360, USA.

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http://thorax.bmj.com/lookup/doi/10.1136/thoraxjnl-2011-2011
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http://dx.doi.org/10.1136/thoraxjnl-2011-201183DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3578398PMC
May 2012

Strain-dependent induction of neutrophil histamine production and cell death by Pseudomonas aeruginosa.

J Leukoc Biol 2012 Feb 10;91(2):275-84. Epub 2011 Nov 10.

Department of Medicine, University of California at San Francisco, San Francisco, California, USA.

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http://doi.wiley.com/10.1189/jlb.0711356
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http://dx.doi.org/10.1189/jlb.0711356DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3290427PMC
February 2012

The emerging relationship between the airway microbiota and chronic respiratory disease: clinical implications.

Expert Rev Respir Med 2011 Dec;5(6):809-21

Division of Pulmonary and Critical Care Medicine, Department of Medicine, University of California San Francisco, 513 Parnassus Avenue, Med Sci S357, San Francisco, CA 94143, USA.

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http://dx.doi.org/10.1586/ers.11.76DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3359942PMC
December 2011

Effect of prenatal indoor pet exposure on the trajectory of total IgE levels in early childhood.

J Allergy Clin Immunol 2011 Oct 5;128(4):880-885.e4. Epub 2011 Aug 5.

Department of Public Health Sciences, Henry Ford Hospital, Detroit, MI 48202, USA.

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http://dx.doi.org/10.1016/j.jaci.2011.06.039DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3185205PMC
October 2011

Nucleic acid extraction efficiency and bacterial recovery from maxillary sinus mucosal samples obtained by brushing or biopsy.

Am J Rhinol Allergy 2010 Jul-Aug;24(4):263-5

Department of Otolaryngology-Head and Neck Surgery, University of California, San Francisco, California 94143, USA.

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http://journals.sagepub.com/doi/10.2500/ajra.2010.24.3472
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http://dx.doi.org/10.2500/ajra.2010.24.3472DOI Listing
March 2011

Probiotic manipulation of the gastrointestinal microbiota.

Gut Microbes 2010 Sep 27;1(5):335-338. Epub 2010 Jul 27.

Colitis and Crohn's Disease Center; Division of Gastroenterology; Department of Medicine; University of California at San Francisco; San Francisco, CA USA.

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http://dx.doi.org/10.4161/gmic.1.5.13169DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3023619PMC
September 2010

Comparative analyses of the bacterial microbiota of the human nostril and oropharynx.

mBio 2010 Jun 22;1(3). Epub 2010 Jun 22.

Division of Infectious Diseases, Children's Hospital, Harvard Medical School, Boston, Massachusetts, USA.

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http://dx.doi.org/10.1128/mBio.00129-10DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2925076PMC
June 2010

Role of the gut microbiota in defining human health.

Expert Rev Anti Infect Ther 2010 Apr;8(4):435-54

Colitis and Crohn's Disease Center, Gastroenterology Division, Department of Medicine, University of California, San Francisco, San Francisco, CA 94143, USA.

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http://dx.doi.org/10.1586/eri.10.14DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2881665PMC
April 2010

A persistent and diverse airway microbiota present during chronic obstructive pulmonary disease exacerbations.

OMICS 2010 Feb;14(1):9-59

Division of Pulmonary and Critical Care Medicine, Department of Medicine, University of California San Francisco, San Francisco, California 94143-0538, USA.

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http://dx.doi.org/10.1089/omi.2009.0100DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3116451PMC
February 2010

Lactobacillus casei abundance is associated with profound shifts in the infant gut microbiome.

PLoS One 2010 Jan 18;5(1):e8745. Epub 2010 Jan 18.

Division of Gastroenterology, University of California San Francisco, San Francisco, California, United States of America.

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http://journals.plos.org/plosone/article?id=10.1371/journal.pone.0008745PLOS
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2807455PMC
January 2010

Matrix metalloproteases in bronchoalveolar lavage fluid of patients with type III Pseudomonas aeruginosa pneumonia.

J Infect 2009 Jul 23;59(1):49-55. Epub 2009 May 23.

The Veterans Affairs Western New York Healthcare System, Medical Research Building 20, 3495 Bailey Avenue, Buffalo, NY 14215-1199, USA.

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http://dx.doi.org/10.1016/j.jinf.2009.05.004DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2756421PMC
July 2009

Novel strategies to combat bacterial virulence.

Curr Opin Crit Care 2008 Oct;14(5):593-9

Department of Anesthesia and Perioperative Care, University of California San Francisco, San Francisco, California 94143, USA.

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http://dx.doi.org/10.1097/MCC.0b013e32830f1dd5DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2859961PMC
October 2008

Persistent infection with Pseudomonas aeruginosa in ventilator-associated pneumonia.

Am J Respir Crit Care Med 2008 Sep 8;178(5):513-9. Epub 2008 May 8.

Western New York Respiratory Research Center, Department of Medicine, State University of New York at Buffalo School of Medicine and Biomedical Sciences, Buffalo, New York 14215, USA.

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http://dx.doi.org/10.1164/rccm.200802-239OCDOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2542430PMC
September 2008

Role of integrin alphav beta6 in acute lung injury induced by Pseudomonas aeruginosa.

Infect Immun 2008 Jun 31;76(6):2325-32. Epub 2008 Mar 31.

Department of Anesthesia and Perioperative Care, University of California, San Francisco, California, USA.

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http://dx.doi.org/10.1128/IAI.01431-07DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2423078PMC
June 2008

Microbial manipulation of immune function for asthma prevention: inferences from clinical trials.

Proc Am Thorac Soc 2007 Jul;4(3):277-82

Division of Allergy and Immunology, Department of Medcine, University of California, San Francisco, 505 Parnassus Avenue, San Francisco, CA 94143-0130, USA.

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http://dx.doi.org/10.1513/pats.200702-033AWDOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2647630PMC
July 2007