Susan R Wessler

Susan R Wessler

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Susan R Wessler

Susan R Wessler

Publications by authors named "Susan R Wessler"

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Origin of spontaneous mutations in maize has been hiding in plain sight.

Authors:
Susan R Wessler

Proc Natl Acad Sci U S A 2019 May 14;116(22):10617-10619. Epub 2019 May 14.

Department of Botany and Plant Sciences, University of California, Riverside, CA 92521

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http://dx.doi.org/10.1073/pnas.1906035116DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6561184PMC
May 2019

Tracking the origin of two genetic components associated with transposable element bursts in domesticated rice.

Nat Commun 2019 02 7;10(1):641. Epub 2019 Feb 7.

Department of Botany and Plant Sciences, University of California, Riverside, CA, 92521, USA.

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http://dx.doi.org/10.1038/s41467-019-08451-3DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6367367PMC
February 2019

Tracking the genome-wide outcomes of a transposable element burst over decades of amplification.

Proc Natl Acad Sci U S A 2017 12 20;114(49):E10550-E10559. Epub 2017 Nov 20.

Department of Botany and Plant Sciences, University of California, Riverside CA 92521;

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http://dx.doi.org/10.1073/pnas.1716459114DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5724284PMC
December 2017

Transposition of Mutator-like transposable elements (MULEs) resembles hAT and Transib elements and V(D)J recombination.

Nucleic Acids Res 2017 Jun;45(11):6644-6655

Department of Botany and Plant Sciences, University of California, Riverside, CA 92521, USA.

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http://dx.doi.org/10.1093/nar/gkx357DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5499845PMC
June 2017

Functional characterization of the active like transposable element, from the mosquito .

Mob DNA 2017 11;8. Epub 2017 Jan 11.

Department of Botany and Plant Sciences, University of California, Riverside, CA 92521 USA.

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http://dx.doi.org/10.1186/s13100-016-0084-6DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5225508PMC
January 2017

RelocaTE2: a high resolution transposable element insertion site mapping tool for population resequencing.

PeerJ 2017 26;5:e2942. Epub 2017 Jan 26.

Department of Plant Pathology & Microbiology, University of California, Riverside, CA, United States; Institute for Integrative Genome Biology, University of California, Riverside, CA, United States.

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http://dx.doi.org/10.7717/peerj.2942DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5274521PMC
January 2017

Fine-scale variation in meiotic recombination in Mimulus inferred from population shotgun sequencing.

Proc Natl Acad Sci U S A 2013 Nov 13;110(48):19478-82. Epub 2013 Nov 13.

Department of Energy Joint Genome Institute, Walnut Creek, CA 94598.

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http://dx.doi.org/10.1073/pnas.1319032110DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3845195PMC
November 2013

The use of RelocaTE and unassembled short reads to produce high-resolution snapshots of transposable element generated diversity in rice.

G3 (Bethesda) 2013 Jun 21;3(6):949-57. Epub 2013 Jun 21.

Department of Plant Pathology & Microbiology, University of California-Riverside, California 92521, USA.

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http://dx.doi.org/10.1534/g3.112.005348DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3689806PMC
June 2013

Transposing from the laboratory to the classroom to generate authentic research experiences for undergraduates.

Genetics 2013 Feb 19;193(2):367-75. Epub 2012 Nov 19.

Department of Botany and Plant Sciences, University of California, Riverside, CA 92521, USA.

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http://dx.doi.org/10.1534/genetics.112.147355DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3567729PMC
February 2013

Comparison of class 2 transposable elements at superfamily resolution reveals conserved and distinct features in cereal grass genomes.

BMC Genomics 2013 Jan 31;14:71. Epub 2013 Jan 31.

Department of Plant Biology, University of Georgia, Athens, GA 30602, USA.

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http://dx.doi.org/10.1186/1471-2164-14-71DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3579700PMC
January 2013

The rice miniature inverted repeat transposable element mPing is an effective insertional mutagen in soybean.

Plant Physiol 2011 Oct 15;157(2):552-62. Epub 2011 Aug 15.

Institute for Plant Breeding, Genetics and Genomics/Center for Applied Genetic Technologies, University of Georgia, Athens, Georgia 30602, USA.

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http://dx.doi.org/10.1104/pp.111.181206DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3192579PMC
October 2011

The catalytic domain of all eukaryotic cut-and-paste transposase superfamilies.

Proc Natl Acad Sci U S A 2011 May 25;108(19):7884-9. Epub 2011 Apr 25.

Department of Plant Biology, University of Georgia, Athens, GA 30602, USA.

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http://dx.doi.org/10.1073/pnas.1104208108DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3093488PMC
May 2011

MITE-Hunter: a program for discovering miniature inverted-repeat transposable elements from genomic sequences.

Nucleic Acids Res 2010 Dec 29;38(22):e199. Epub 2010 Sep 29.

Department of Plant Biology, University of Georgia, Athens, GA 30602, USA.

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https://academic.oup.com/nar/article-lookup/doi/10.1093/nar/
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http://dx.doi.org/10.1093/nar/gkq862DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3001096PMC
December 2010

The B73 maize genome: complexity, diversity, and dynamics.

Authors:
Patrick S Schnable Doreen Ware Robert S Fulton Joshua C Stein Fusheng Wei Shiran Pasternak Chengzhi Liang Jianwei Zhang Lucinda Fulton Tina A Graves Patrick Minx Amy Denise Reily Laura Courtney Scott S Kruchowski Chad Tomlinson Cindy Strong Kim Delehaunty Catrina Fronick Bill Courtney Susan M Rock Eddie Belter Feiyu Du Kyung Kim Rachel M Abbott Marc Cotton Andy Levy Pamela Marchetto Kerri Ochoa Stephanie M Jackson Barbara Gillam Weizu Chen Le Yan Jamey Higginbotham Marco Cardenas Jason Waligorski Elizabeth Applebaum Lindsey Phelps Jason Falcone Krishna Kanchi Thynn Thane Adam Scimone Nay Thane Jessica Henke Tom Wang Jessica Ruppert Neha Shah Kelsi Rotter Jennifer Hodges Elizabeth Ingenthron Matt Cordes Sara Kohlberg Jennifer Sgro Brandon Delgado Kelly Mead Asif Chinwalla Shawn Leonard Kevin Crouse Kristi Collura Dave Kudrna Jennifer Currie Ruifeng He Angelina Angelova Shanmugam Rajasekar Teri Mueller Rene Lomeli Gabriel Scara Ara Ko Krista Delaney Marina Wissotski Georgina Lopez David Campos Michele Braidotti Elizabeth Ashley Wolfgang Golser HyeRan Kim Seunghee Lee Jinke Lin Zeljko Dujmic Woojin Kim Jayson Talag Andrea Zuccolo Chuanzhu Fan Aswathy Sebastian Melissa Kramer Lori Spiegel Lidia Nascimento Theresa Zutavern Beth Miller Claude Ambroise Stephanie Muller Will Spooner Apurva Narechania Liya Ren Sharon Wei Sunita Kumari Ben Faga Michael J Levy Linda McMahan Peter Van Buren Matthew W Vaughn Kai Ying Cheng-Ting Yeh Scott J Emrich Yi Jia Ananth Kalyanaraman An-Ping Hsia W Brad Barbazuk Regina S Baucom Thomas P Brutnell Nicholas C Carpita Cristian Chaparro Jer-Ming Chia Jean-Marc Deragon James C Estill Yan Fu Jeffrey A Jeddeloh Yujun Han Hyeran Lee Pinghua Li Damon R Lisch Sanzhen Liu Zhijie Liu Dawn Holligan Nagel Maureen C McCann Phillip SanMiguel Alan M Myers Dan Nettleton John Nguyen Bryan W Penning Lalit Ponnala Kevin L Schneider David C Schwartz Anupma Sharma Carol Soderlund Nathan M Springer Qi Sun Hao Wang Michael Waterman Richard Westerman Thomas K Wolfgruber Lixing Yang Yeisoo Yu Lifang Zhang Shiguo Zhou Qihui Zhu Jeffrey L Bennetzen R Kelly Dawe Jiming Jiang Ning Jiang Gernot G Presting Susan R Wessler Srinivas Aluru Robert A Martienssen Sandra W Clifton W Richard McCombie Rod A Wing Richard K Wilson

Science 2009 Nov;326(5956):1112-5

Center for Plant Genomics, Iowa State University, Ames, IA 50011, USA.

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http://www.dawelab.org/wp-content/uploads/2011/03/schnable-2
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http://www.sciencemag.org/cgi/doi/10.1126/science.1178534
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http://dx.doi.org/10.1126/science.1178534DOI Listing
November 2009

Unexpected consequences of a sudden and massive transposon amplification on rice gene expression.

Nature 2009 Oct;461(7267):1130-4

Department of Plant Biology, University of Georgia, Athens, Georgia 30602, USA.

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http://dx.doi.org/10.1038/nature08479DOI Listing
October 2009

Tuned for transposition: molecular determinants underlying the hyperactivity of a Stowaway MITE.

Science 2009 Sep;325(5946):1391-4

Department of Plant Biology, University of Georgia, Athens, GA 30602, USA.

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http://dx.doi.org/10.1126/science.1175688DOI Listing
September 2009

TARGeT: a web-based pipeline for retrieving and characterizing gene and transposable element families from genomic sequences.

Nucleic Acids Res 2009 Jun 8;37(11):e78. Epub 2009 May 8.

Department of Plant Biology, University of Georgia, Athens, GA 30602, USA.

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http://dx.doi.org/10.1093/nar/gkp295DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2699529PMC
June 2009

High potential of a transposon mPing as a marker system in japonica x japonica cross in rice.

DNA Res 2009 Apr 6;16(2):131-40. Epub 2009 Mar 6.

Plant Breeding Laboratory, Division of Agronomy and Horticulture Science, Graduate School of Agriculture, Kyoto University, Kyoto, Japan.

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http://dx.doi.org/10.1093/dnares/dsp004DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2671205PMC
April 2009

QTL analysis of floral traits in Louisiana iris hybrids.

Evolution 2007 Oct 23;61(10):2308-19. Epub 2007 Aug 23.

Department of Genetics, The University of Georgia, Athens, GA 30602, USA.

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http://dx.doi.org/10.1111/j.1558-5646.2007.00214.xDOI Listing
October 2007

Transposition of the rice miniature inverted repeat transposable element mPing in Arabidopsis thaliana.

Proc Natl Acad Sci U S A 2007 Jun 19;104(26):10962-7. Epub 2007 Jun 19.

Department of Plant Biology, University of Georgia, Athens, GA 30602, USA.

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http://dx.doi.org/10.1073/pnas.0702080104DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC1904124PMC
June 2007

The transposable element landscape of the model legume Lotus japonicus.

Genetics 2006 Dec 8;174(4):2215-28. Epub 2006 Oct 8.

Department of Plant Biology, University of Georgia, Athens 30602, USA.

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http://dx.doi.org/10.1534/genetics.106.062752DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC1698628PMC
December 2006

Transposable elements and the evolution of eukaryotic genomes.

Authors:
Susan R Wessler

Proc Natl Acad Sci U S A 2006 Nov 13;103(47):17600-1. Epub 2006 Nov 13.

Department of Plant Biology, University of Georgia, Athens, GA 30602, USA.

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http://dx.doi.org/10.1073/pnas.0607612103DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC1693792PMC
November 2006

Dramatic amplification of a rice transposable element during recent domestication.

Proc Natl Acad Sci U S A 2006 Nov 13;103(47):17620-5. Epub 2006 Nov 13.

Department of Plant Biology, University of Georgia, Athens, GA 30602, USA.

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http://dx.doi.org/10.1073/pnas.0605421103DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC1693796PMC
November 2006

A rice Tc1/mariner-like element transposes in yeast.

Plant Cell 2006 Oct 13;18(10):2469-78. Epub 2006 Oct 13.

Department of Plant Biology, University of Georgia, Athens, Georgia 30602, USA.

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http://dx.doi.org/10.1105/tpc.106.045906DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC1626630PMC
October 2006

Genetic mapping of species boundaries in Louisiana irises using IRRE retrotransposon display markers.

Genetics 2005 Nov 3;171(3):1289-303. Epub 2005 Aug 3.

Department of Plant Biology, University of Georgia, Athens, Georgia 30602, USA.

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http://dx.doi.org/10.1534/genetics.105.044552DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC1456832PMC
November 2005

Unexpected diversity and differential success of DNA transposons in four species of entamoeba protozoans.

Mol Biol Evol 2005 Sep 18;22(9):1751-63. Epub 2005 May 18.

Department of Plant Biology, The University of Georgia, USA.

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http://dx.doi.org/10.1093/molbev/msi169DOI Listing
September 2005

DNA-binding specificity of rice mariner-like transposases and interactions with Stowaway MITEs.

Nucleic Acids Res 2005 14;33(7):2153-65. Epub 2005 Apr 14.

Department of Plant Biology, University of Georgia Athens, GA 30602, USA.

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http://dx.doi.org/10.1093/nar/gki509DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC1079968PMC
May 2005

BoS: a large and diverse family of short interspersed elements (SINEs) in Brassica oleracea.

J Mol Evol 2005 May;60(5):677-87

Department of Plant Biology, University of Georgia, Athens, 30602, USA.

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http://dx.doi.org/10.1007/s00239-004-0259-5DOI Listing
May 2005

The consequences of gene and genome duplication in plants.

Curr Opin Plant Biol 2005 Apr;8(2):119-21

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http://dx.doi.org/10.1016/j.pbi.2005.01.015DOI Listing
April 2005

Homing into the origin of the AP2 DNA binding domain.

Authors:
Susan R Wessler

Trends Plant Sci 2005 Feb;10(2):54-6

Department of Plant Biology, University of Georgia, Athens, GA 30602, USA.

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http://dx.doi.org/10.1016/j.tplants.2004.12.007DOI Listing
February 2005

Pack-MULE transposable elements mediate gene evolution in plants.

Nature 2004 Sep;431(7008):569-73

Department of Plant Biology, University of Georgia, Athens, Georgia 30602, USA.

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http://dx.doi.org/10.1038/nature02953DOI Listing
September 2004

MITE display.

Methods Mol Biol 2004 ;260:175-88

Institute for Genomic Diversity and Department of Plant Breeding, Cornell University, Ithaca, NY, USA.

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http://dx.doi.org/10.1385/1-59259-755-6:175DOI Listing
June 2004

Using rice to understand the origin and amplification of miniature inverted repeat transposable elements (MITEs).

Curr Opin Plant Biol 2004 Apr;7(2):115-9

Department of Plant Biology, University of Georgia, Athens, Georgia 30602, USA.

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http://dx.doi.org/10.1016/j.pbi.2004.01.004DOI Listing
April 2004

Genome-wide comparative analysis of the transposable elements in the related species Arabidopsis thaliana and Brassica oleracea.

Proc Natl Acad Sci U S A 2004 Apr 2;101(15):5589-94. Epub 2004 Apr 2.

Department of Plant Biology, University of Georgia, Athens, GA 30602, USA.

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http://www.pnas.org/cgi/doi/10.1073/pnas.0401243101
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http://dx.doi.org/10.1073/pnas.0401243101DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC397431PMC
April 2004

An active DNA transposon family in rice.

Nature 2003 Jan;421(6919):163-7

Department of Plant Biology, University of Georgia, Athens, Georgia 30602, USA.

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http://dx.doi.org/10.1038/nature01214DOI Listing
January 2003

Dasheng and RIRE2. A nonautonomous long terminal repeat element and its putative autonomous partner in the rice genome.

Plant Physiol 2002 Dec;130(4):1697-705

Department of Plant Biology, University of Georgia, Athens, Georgia 30602, USA.

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http://www.plantphysiol.org/cgi/doi/10.1104/pp.015412
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http://dx.doi.org/10.1104/pp.015412DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC166684PMC
December 2002

Efficient capture of unique sequences from eukaryotic genomes.

Trends Genet 2002 Nov;18(11):547-50

Dept of Plant and Soil Sciences, Mississippi State University, Mississippi State, MS 39762, USA.

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http://dx.doi.org/10.1016/s0168-9525(02)02764-6DOI Listing
November 2002

Plant transposable elements: where genetics meets genomics.

Nat Rev Genet 2002 May;3(5):329-41

Departments of Plant Biology and Genetics, The University of Georgia, Athens, Georgia 30602, USA.

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http://dx.doi.org/10.1038/nrg793DOI Listing
May 2002

Mariner-like transposases are widespread and diverse in flowering plants.

Proc Natl Acad Sci U S A 2002 Jan 26;99(1):280-5. Epub 2001 Dec 26.

Department of Botany and Genetics, University of Georgia, Athens, GA 30602, USA.

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http://dx.doi.org/10.1073/pnas.022626699DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC117552PMC
January 2002