Susan Lucas

Susan Lucas

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Susan Lucas

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A retrospective analysis of time delays in patients presenting with stroke to an academic emergency department.

Authors:
Diteboho Khalema Lara N Goldstein Susan Lucas

SA J Radiol 2018 21;22(1):1319. Epub 2018 Jun 21.

Department of Radiology, University of the Witwatersrand, South Africa.

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http://dx.doi.org/10.4102/sajr.v22i1.1319DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6837766PMC
June 2018

Pilot Educational Intervention and Feasibility Assessment of Breast Ultrasound in Rural South Africa.

Authors:
Lindsay K Dickerson Anne F Rositch Susan Lucas Susan C Harvey

J Glob Oncol 2017 Oct 27;3(5):502-508. Epub 2017 Mar 27.

, Johns Hopkins University School of Medicine; , Johns Hopkins Bloomberg School of Public Health; , Johns Hopkins Medical Institutions, Baltimore, MD; and , Chris Hani Baragwanath Academic Hospital, University of Witwatersrand School of Medicine, Johannesburg, South Africa.

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http://dx.doi.org/10.1200/JGO.2016.008086DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5646899PMC
October 2017

Digital platform for improving non-radiologists' and radiologists' interpretation of chest radiographs for suspected tuberculosis - a method for supporting task-shifting in developing countries.

Authors:
Namakula S Semakula-Katende Savvas Andronikou Susan Lucas

Pediatr Radiol 2016 Sep 12;46(10):1384-91. Epub 2016 May 12.

Department of Radiology, Faculty of Health Sciences, University of the Witwatersrand, Witwatersrand, South Africa.

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http://dx.doi.org/10.1007/s00247-016-3630-yDOI Listing
September 2016

Complete genome sequence of the Antarctic Halorubrum lacusprofundi type strain ACAM 34.

Authors:
Iain J Anderson Priya DasSarma Susan Lucas Alex Copeland Alla Lapidus Tijana Glavina Del Rio Hope Tice Eileen Dalin David C Bruce Lynne Goodwin Sam Pitluck David Sims Thomas S Brettin John C Detter Cliff S Han Frank Larimer Loren Hauser Miriam Land Natalia Ivanova Paul Richardson Ricardo Cavicchioli Shiladitya DasSarma Carl R Woese Nikos C Kyrpides

Stand Genomic Sci 2016 10;11(1):70. Epub 2016 Sep 10.

DOE Joint Genome Institute, Walnut Creek, CA 94598 USA.

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http://dx.doi.org/10.1186/s40793-016-0194-2DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5018182PMC
September 2016

Complete genome sequence of the phenanthrene-degrading soil bacterium Delftia acidovorans Cs1-4.

Authors:
Ameesha R Shetty Vidya de Gannes Chioma C Obi Susan Lucas Alla Lapidus Jan-Fang Cheng Lynne A Goodwin Samuel Pitluck Linda Peters Natalia Mikhailova Hazuki Teshima Cliff Han Roxanne Tapia Miriam Land Loren J Hauser Nikos Kyrpides Natalia Ivanova Ioanna Pagani Patrick S G Chain Vincent J Denef Tanya Woyke William J Hickey

Stand Genomic Sci 2015 15;10:55. Epub 2015 Aug 15.

O.N. Allen Laboratory for Soil Microbiology, Department of Soil Science, University of Wisconsin-Madison, Madison, WI 53706 USA.

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http://link.springer.com/content/pdf/10.1186%2Fs40793-015-00
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http://standardsingenomics.biomedcentral.com/articles/10.118
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http://dx.doi.org/10.1186/s40793-015-0041-xDOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4572682PMC
September 2015

High-Quality Draft Genome Sequence of Desulfovibrio carbinoliphilus FW-101-2B, an Organic Acid-Oxidizing Sulfate-Reducing Bacterium Isolated from Uranium(VI)-Contaminated Groundwater.

Authors:
Bradley D Ramsay Chiachi Hwang Hannah L Woo Sue L Carroll Susan Lucas James Han Alla L Lapidus Jan-Fang Cheng Lynne A Goodwin Samuel Pitluck Lin Peters Olga Chertkov Brittany Held John C Detter Cliff S Han Roxanne Tapia Miriam L Land Loren J Hauser Nikos C Kyrpides Natalia N Ivanova Natalia Mikhailova Ioanna Pagani Tanja Woyke Adam P Arkin Paramvir Dehal Dylan Chivian Craig S Criddle Weimin Wu Romy Chakraborty Terry C Hazen Matthew W Fields

Genome Announc 2015 Mar 12;3(2). Epub 2015 Mar 12.

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http://dx.doi.org/10.1128/genomeA.00092-15DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4357754PMC
March 2015

Complete genome sequence of Anabaena variabilis ATCC 29413.

Authors:
Teresa Thiel Brenda S Pratte Jinshun Zhong Lynne Goodwin Alex Copeland Susan Lucas Cliff Han Sam Pitluck Miriam L Land Nikos C Kyrpides Tanja Woyke

Stand Genomic Sci 2014 Jun 1;9(3):562-73. Epub 2014 Jan 1.

DOE Joint Genome Institute, Walnut Creek, CA ; Lawrence Berkeley National Laboratory, Berkeley, CA.

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http://www.standardsingenomics.org/index.php/sigen/article/v
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http://dx.doi.org/10.4056/sigs.3899418DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4148955PMC
June 2014

Genome sequence of the Thermotoga thermarum type strain (LA3(T)) from an African solfataric spring.

Authors:
Markus Göker Stefan Spring Carmen Scheuner Iain Anderson Ahmet Zeytun Matt Nolan Susan Lucas Hope Tice Tijana Glavina Del Rio Jan-Fang Cheng Cliff Han Roxanne Tapia Lynne A Goodwin Sam Pitluck Konstantinos Liolios Konstantinos Mavromatis Ioanna Pagani Natalia Ivanova Natalia Mikhailova Amrita Pati Amy Chen Krishna Palaniappan Miriam Land Loren Hauser Yun-Juan Chang Cynthia D Jeffries Manfred Rohde John C Detter Tanja Woyke James Bristow Jonathan A Eisen Victor Markowitz Philip Hugenholtz Nikos C Kyrpides Hans-Peter Klenk Alla Lapidus

Stand Genomic Sci 2014 Jun 15;9(3):1105-17. Epub 2014 May 15.

Theodosius Dobzhansky Center for Genome Bionformatics, St. Petersburg State University, St. Petersburg, Russia ; Algorithmic Biology Lab, St. Petersburg Academic University, St. Petersburg, Russia.

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http://dx.doi.org/10.4056/sigs.3016383DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4148951PMC
June 2014

Bronchoscopic assessment of airway involvement in children presenting with clinically significant airway obstruction due to tuberculosis.

Authors:
Pierre Goussard Robert P Gie Sharon Kling Savvas Andronikou Susan Lucas Jacques Janson Gawie Roussouw

Pediatr Pulmonol 2013 Oct 31;48(10):1000-7. Epub 2012 Dec 31.

Faculty of Health Sciences, Departments of Paediatrics and Child Health, Stellenbosch University, and Tygerberg Children's Hospital, Tygerberg, Cape Town, South Africa.

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http://dx.doi.org/10.1002/ppul.22747DOI Listing
October 2013

Genome sequence of the chemoheterotrophic soil bacterium Saccharomonospora cyanea type strain (NA-134(T)).

Authors:
Jan P Meier-Kolthoff Megan Lu Marcel Huntemann Susan Lucas Alla Lapidus Alex Copeland Sam Pitluck Lynne A Goodwin Cliff Han Roxanne Tapia Gabriele Pötter Miriam Land Natalia Ivanova Manfred Rohde Markus Göker John C Detter Tanja Woyke Nikos C Kyrpides Hans-Peter Klenk

Stand Genomic Sci 2013 Oct 30;9(1):28-41. Epub 2013 Sep 30.

Leibniz Institute DSMZ - German Collection of Microorganisms and Cell Cultures, Braunschweig, Germany.

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http://www.standardsingenomics.org/index.php/sigen/article/v
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http://dx.doi.org/10.4056/sigs.4207886DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3910552PMC
October 2013

Complete genome sequence of Nitrosomonas sp. Is79, an ammonia oxidizing bacterium adapted to low ammonium concentrations.

Authors:
Annette Bollmann Christopher J Sedlacek Jeanette Norton Hendrikus J Laanbroek Yuichi Suwa Lisa Y Stein Martin G Klotz Daniel Arp Luis Sayavedra-Soto Megan Lu David Bruce Chris Detter Roxanne Tapia James Han Tanja Woyke Susan M Lucas Sam Pitluck Len Pennacchio Matt Nolan Miriam L Land Marcel Huntemann Shweta Deshpande Cliff Han Amy Chen Nikos Kyrpides Konstantinos Mavromatis Victor Markowitz Ernest Szeto Natalia Ivanova Natalia Mikhailova Ioanna Pagani Amrita Pati Lin Peters Galina Ovchinnikova Lynne A Goodwin

Stand Genomic Sci 2013 25;7(3):469-82. Epub 2013 Feb 25.

Miami University, Oxford, Ohio, USA.

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http://genomea.asm.org/content/4/2/e00094-16.full.pdf
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http://dx.doi.org/10.4056/sigs.3517166DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3764937PMC
September 2013

Complete genome sequence of the halophilic bacterium Spirochaeta africana type strain (Z-7692(T)) from the alkaline Lake Magadi in the East African Rift.

Authors:
Konstantinos Liolos Birte Abt Carmen Scheuner Hazuki Teshima Brittany Held Alla Lapidus Matt Nolan Susan Lucas Shweta Deshpande Jan-Fang Cheng Roxanne Tapia Lynne A Goodwin Sam Pitluck Ioanna Pagani Natalia Ivanova Konstantinos Mavromatis Natalia Mikhailova Marcel Huntemann Amrita Pati Amy Chen Krishna Palaniappan Miriam Land Manfred Rohde Brian J Tindall John C Detter Markus Göker James Bristow Jonathan A Eisen Victor Markowitz Philip Hugenholtz Tanja Woyke Hans-Peter Klenk Nikos C Kyrpides

Stand Genomic Sci 2013 20;8(2):165-76. Epub 2013 May 20.

DOE Joint Genome Institute, Walnut Creek, California, USA.

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http://dx.doi.org/10.4056/sigs.3607108DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3746417PMC
August 2013

Genome sequence of the phylogenetically isolated spirochete Leptonema illini type strain (3055(T)).

Authors:
Marcel Huntemann Erko Stackebrandt Brittany Held Matt Nolan Susan Lucas Nancy Hammon Shweta Deshpande Jan-Fang Cheng Roxanne Tapia Lynne A Goodwin Sam Pitluck Konstantinos Liolios Ioanna Pagani Natalia Ivanova Konstantinos Mavromatis Natalia Mikhailova Amrita Pati Amy Chen Krishna Palaniappan Miriam Land Manfred Rohde Sabine Gronow Markus Göker John C Detter James Bristow Jonathan A Eisen Victor Markowitz Tanja Woyke Philip Hugenholtz Nikos C Kyrpides Hans-Peter Klenk Alla Lapidus

Stand Genomic Sci 2013 25;8(2):177-87. Epub 2013 May 25.

DOE Joint Genome Institute, Walnut Creek, California, USA.

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http://dx.doi.org/10.4056/sigs.3637201DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3746420PMC
August 2013

Genome sequence of the free-living aerobic spirochete Turneriella parva type strain (H(T)), and emendation of the species Turneriella parva.

Authors:
Erko Stackebrandt Olga Chertkov Alla Lapidus Matt Nolan Susan Lucas Nancy Hammon Shweta Deshpande Jan-Fang Cheng Roxanne Tapia Lynne A Goodwin Sam Pitluck Konstantinos Liolios Ioanna Pagani Natalia Ivanova Konstantinos Mavromatis Natalia Mikhailova Marcel Huntemann Amrita Pati Amy Chen Krishna Palaniappan Miriam Land Chongle Pan Manfred Rohde Sabine Gronow Markus Göker John C Detter James Bristow Jonathan A Eisen Victor Markowitz Philip Hugenholtz Tanja Woyke Nikos C Kyrpides Hans-Peter Klenk

Stand Genomic Sci 2013 25;8(2):228-38. Epub 2013 May 25.

Leibniz-Institute DSMZ - German Collection of Microorganisms and Cell Cultures, Braunschweig, Germany.

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http://dx.doi.org/10.4056/sigs.3617113DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3746428PMC
August 2013

Permanent draft genome sequence of Comamonas testosteroni KF-1.

Authors:
Michael Weiss Anna I Kesberg Kurt M Labutti Sam Pitluck David Bruce Loren Hauser Alex Copeland Tanja Woyke Stephen Lowry Susan Lucas Miriam Land Lynne Goodwin Staffan Kjelleberg Alasdair M Cook Matthias Buhmann Torsten Thomas David Schleheck

Stand Genomic Sci 2013 30;8(2):239-54. Epub 2013 May 30.

Department of Biological Sciences, University of Konstanz, Germany ; Konstanz Research School Chemical Biology, University of Konstanz, Germany.

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http://dx.doi.org/10.4056/sigs.3847890DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3746432PMC
August 2013

Diverse lifestyles and strategies of plant pathogenesis encoded in the genomes of eighteen Dothideomycetes fungi.

Authors:
Robin A Ohm Nicolas Feau Bernard Henrissat Conrad L Schoch Benjamin A Horwitz Kerrie W Barry Bradford J Condon Alex C Copeland Braham Dhillon Fabian Glaser Cedar N Hesse Idit Kosti Kurt LaButti Erika A Lindquist Susan Lucas Asaf A Salamov Rosie E Bradshaw Lynda Ciuffetti Richard C Hamelin Gert H J Kema Christopher Lawrence James A Scott Joseph W Spatafora B Gillian Turgeon Pierre J G M de Wit Shaobin Zhong Stephen B Goodwin Igor V Grigoriev

PLoS Pathog 2012 6;8(12):e1003037. Epub 2012 Dec 6.

United States Department of Energy DOE Joint Genome Institute JGI, Walnut Creek, California, United States of America.

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http://dx.doi.org/10.1371/journal.ppat.1003037DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3516569PMC
May 2013

The high-quality draft genome of peach (Prunus persica) identifies unique patterns of genetic diversity, domestication and genome evolution.

Authors:
Ignazio Verde Albert G Abbott Simone Scalabrin Sook Jung Shengqiang Shu Fabio Marroni Tatyana Zhebentyayeva Maria Teresa Dettori Jane Grimwood Federica Cattonaro Andrea Zuccolo Laura Rossini Jerry Jenkins Elisa Vendramin Lee A Meisel Veronique Decroocq Bryon Sosinski Simon Prochnik Therese Mitros Alberto Policriti Guido Cipriani Luca Dondini Stephen Ficklin David M Goodstein Pengfei Xuan Cristian Del Fabbro Valeria Aramini Dario Copetti Susana Gonzalez David S Horner Rachele Falchi Susan Lucas Erica Mica Jonathan Maldonado Barbara Lazzari Douglas Bielenberg Raul Pirona Mara Miculan Abdelali Barakat Raffaele Testolin Alessandra Stella Stefano Tartarini Pietro Tonutti Pere Arús Ariel Orellana Christina Wells Dorrie Main Giannina Vizzotto Herman Silva Francesco Salamini Jeremy Schmutz Michele Morgante Daniel S Rokhsar

Nat Genet 2013 May 24;45(5):487-94. Epub 2013 Mar 24.

Consiglio per la Ricerca e la Sperimentazione in Agricoltura (CRA)-Centro di Ricerca per la Frutticoltura, Rome, Italy.

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http://dx.doi.org/10.1038/ng.2586DOI Listing
May 2013

Complete Genome Sequence of the Hyperthermophilic Sulfate-Reducing Bacterium Thermodesulfobacterium geofontis OPF15T.

Authors:
James G Elkins Scott D Hamilton-Brehm Susan Lucas James Han Alla Lapidus Jan-Fang Cheng Lynne A Goodwin Sam Pitluck Lin Peters Natalia Mikhailova Karen W Davenport John C Detter Cliff S Han Roxanne Tapia Miriam L Land Loren Hauser Nikos C Kyrpides Natalia N Ivanova Ioanna Pagani David Bruce Tanja Woyke Robert W Cottingham

Genome Announc 2013 Apr 11;1(2):e0016213. Epub 2013 Apr 11.

BioEnergy Science Center, Oak Ridge National Laboratory, Oak Ridge, Tennessee, USA;

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http://dx.doi.org/10.1128/genomeA.00162-13DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3624685PMC
April 2013

Complete genome sequence of Coriobacterium glomerans type strain (PW2(T)) from the midgut of Pyrrhocoris apterus L. (red soldier bug).

Authors:
Erko Stackebrandt Ahmet Zeytun Alla Lapidus Matt Nolan Susan Lucas Nancy Hammon Shweta Deshpande Jan-Fang Cheng Roxanne Tapia Lynne A Goodwin Sam Pitluck Konstantinos Liolios Ioanna Pagani Natalia Ivanova Konstantinos Mavromatis Natalia Mikhailova Marcel Huntemann Amrita Pati Amy Chen Krishna Palaniappan Yun-Juan Chang Miriam Land Loren Hauser Manfred Rohde Rüdiger Pukall Markus Göker John C Detter Tanja Woyke James Bristow Jonathan A Eisen Victor Markowitz Philip Hugenholtz Nikos C Kyrpides Hans-Peter Klenk

Stand Genomic Sci 2013 Apr 15;8(1):15-25. Epub 2013 Apr 15.

Leibniz-Institute DSMZ - German Collection of Microorganisms and Cell Cultures, Braunschweig, Germany.

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http://dx.doi.org/10.4056/sigs.3507020DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3739169PMC
April 2013

Complete genome sequence of the bile-resistant pigment-producing anaerobe Alistipes finegoldii type strain (AHN2437(T)).

Authors:
Konstantinos Mavromatis Erko Stackebrandt Christine Munk Alla Lapidus Matt Nolan Susan Lucas Nancy Hammon Shweta Deshpande Jan-Fang Cheng Roxanne Tapia Lynne A Goodwin Sam Pitluck Konstantinos Liolios Ioanna Pagani Natalia Ivanova Natalia Mikhailova Marcel Huntemann Amrita Pati Amy Chen Krishna Palaniappan Miriam Land Loren Hauser Manfred Rohde Sabine Gronow Markus Göker John C Detter James Bristow Jonathan A Eisen Victor Markowitz Philip Hugenholtz Nikos C Kyrpides Hans-Peter Klenk Tanja Woyke

Stand Genomic Sci 2013 Apr 15;8(1):26-36. Epub 2013 Apr 15.

DOE Joint Genome Institute, Walnut Creek, California, USA.

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http://dx.doi.org/10.4056/sigs.3527032DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3739176PMC
April 2013

High-quality-draft genome sequence of the yellow-pigmented flavobacterium Joostella marina type strain (En5(T)).

Authors:
Erko Stackebrandt Olga Chertkov Alla Lapidus Matt Nolan Susan Lucas Cliff Han Jan-Fang Cheng Roxanne Tapia Lynne A Goodwin David Bruce Sam Pitluck Konstantinos Liolios Konstantinos Mavromatis Ioanna Pagani Natalia Ivanova Natalia Mikhailova Marcel Huntemann Amrita Pati Amy Chen Krishna Palaniappan Manfred Rohde Brian J Tindall Markus Göker Tanja Woyke John C Detter James Bristow Jonathan A Eisen Victor Markowitz Philip Hugenholtz Hans-Peter Klenk Nikos C Kyrpides

Stand Genomic Sci 2013 Apr 15;8(1):37-46. Epub 2013 Apr 15.

Leibniz-Institute DSMZ - German Collection of Microorganisms and Cell Cultures, Braunschweig, Germany.

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http://dx.doi.org/10.4056/sigs.3537045DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3739173PMC
April 2013

Complete genome sequence of the moderate thermophile Anaerobaculum mobile type strain (NGA(T)).

Authors:
Konstantinos Mavromatis Erko Stackebrandt Brittany Held Alla Lapidus Matt Nolan Susan Lucas Nancy Hammon Shweta Deshpande Jan-Fang Cheng Roxanne Tapia Lynne A Goodwin Sam Pitluck Konstantinos Liolios Ioanna Pagani Natalia Ivanova Natalia Mikhailova Marcel Huntemann Amrita Pati Amy Chen Krishna Palaniappan Miriam Land Manfred Rohde Stefan Spring Markus Göker Tanja Woyke John C Detter James Bristow Jonathan A Eisen Victor Markowitz Philip Hugenholtz Hans-Peter Klenk Nikos C Kyrpides

Stand Genomic Sci 2013 Apr 15;8(1):47-57. Epub 2013 Apr 15.

DOE Joint Genome Institute, Walnut Creek, California, USA.

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http://dx.doi.org/10.4056/sigs.3547050DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3739175PMC
April 2013

Genome sequence of the thermophilic fresh-water bacterium Spirochaeta caldaria type strain (H1(T)), reclassification of Spirochaeta caldaria, Spirochaeta stenostrepta, and Spirochaeta zuelzerae in the genus Treponema as Treponema caldaria comb. nov., Treponema stenostrepta comb. nov., and Treponema zuelzerae comb. nov., and emendation of the genus Treponema.

Authors:
Birte Abt Markus Göker Carmen Scheuner Cliff Han Megan Lu Monica Misra Alla Lapidus Matt Nolan Susan Lucas Nancy Hammon Shweta Deshpande Jan-Fang Cheng Roxanne Tapia Lynne A Goodwin Sam Pitluck Konstantinos Liolios Ioanna Pagani Natalia Ivanova Konstantinos Mavromatis Natalia Mikhailova Marcel Huntemann Amrita Pati Amy Chen Krishna Palaniappan Miriam Land Loren Hauser Cynthia D Jeffries Manfred Rohde Stefan Spring Sabine Gronow John C Detter James Bristow Jonathan A Eisen Victor Markowitz Philip Hugenholtz Nikos C Kyrpides Tanja Woyke Hans-Peter Klenk

Stand Genomic Sci 2013 Apr 15;8(1):88-105. Epub 2013 Apr 15.

Leibniz Institute DSMZ - German Collection of Microorganisms and Cell Cultures, Braunschweig, Germany.

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http://dx.doi.org/10.4056/sigs.3096473DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3739177PMC
April 2013

Tuberculous lymphadenopathy is not only obstructive but also inflammatory--it can erode anything it touches. Reply to Marchiori et al.

Authors:
Susan Lucas Savvas Andronikou Pierre Goussard Robert Gie

Pediatr Radiol 2013 Jan 27;43(2):254-5. Epub 2012 Nov 27.

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http://dx.doi.org/10.1007/s00247-012-2557-1DOI Listing
January 2013

Algal genomes reveal evolutionary mosaicism and the fate of nucleomorphs.

Authors:
Bruce A Curtis Goro Tanifuji Fabien Burki Ansgar Gruber Manuel Irimia Shinichiro Maruyama Maria C Arias Steven G Ball Gillian H Gile Yoshihisa Hirakawa Julia F Hopkins Alan Kuo Stefan A Rensing Jeremy Schmutz Aikaterini Symeonidi Marek Elias Robert J M Eveleigh Emily K Herman Mary J Klute Takuro Nakayama Miroslav Oborník Adrian Reyes-Prieto E Virginia Armbrust Stephen J Aves Robert G Beiko Pedro Coutinho Joel B Dacks Dion G Durnford Naomi M Fast Beverley R Green Cameron J Grisdale Franziska Hempel Bernard Henrissat Marc P Höppner Ken-Ichiro Ishida Eunsoo Kim Luděk Kořený Peter G Kroth Yuan Liu Shehre-Banoo Malik Uwe G Maier Darcy McRose Thomas Mock Jonathan A D Neilson Naoko T Onodera Anthony M Poole Ellen J Pritham Thomas A Richards Gabrielle Rocap Scott W Roy Chihiro Sarai Sarah Schaack Shu Shirato Claudio H Slamovits David F Spencer Shigekatsu Suzuki Alexandra Z Worden Stefan Zauner Kerrie Barry Callum Bell Arvind K Bharti John A Crow Jane Grimwood Robin Kramer Erika Lindquist Susan Lucas Asaf Salamov Geoffrey I McFadden Christopher E Lane Patrick J Keeling Michael W Gray Igor V Grigoriev John M Archibald

Nature 2012 Dec 28;492(7427):59-65. Epub 2012 Nov 28.

Department of Biochemistry and Molecular Biology, Dalhousie University, Halifax, Nova Scotia B3H 4R2, Canada.

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http://dx.doi.org/10.1038/nature11681DOI Listing
December 2012

Genome sequence of the flexirubin-pigmented soil bacterium Niabella soli type strain (JS13-8(T)).

Authors:
Iain Anderson Christine Munk Alla Lapidus Matt Nolan Susan Lucas Hope Tice Tijana Glavina Del Rio Jan-Fang Cheng Cliff Han Roxanne Tapia Lynne Goodwin Sam Pitluck Konstantinos Liolios Konstantinos Mavromatis Ioanna Pagani Natalia Mikhailova Amrita Pati Amy Chen Krishna Palaniappan Miriam Land Manfred Rohde Brian J Tindall Markus Göker John C Detter Tanja Woyke James Bristow Jonathan A Eisen Victor Markowitz Philip Hugenholtz Nikos C Kyrpides Hans-Peter Klenk Natalia Ivanova

Stand Genomic Sci 2012 Dec 4;7(2):210-20. Epub 2012 Dec 4.

DOE Joint Genome Institute, Walnut Creek, California, USA.

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http://www.standardsingenomics.org/index.php/sigen/article/v
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http://dx.doi.org/10.4056/sigs.3117229DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3569382PMC
December 2012

Complete genome sequence of the sulfate-reducing firmicute Desulfotomaculum ruminis type strain (DL(T)).

Authors:
Stefan Spring Michael Visser Megan Lu Alex Copeland Alla Lapidus Susan Lucas Jan-Fang Cheng Cliff Han Roxanne Tapia Lynne A Goodwin Sam Pitluck Natalia Ivanova Miriam Land Loren Hauser Frank Larimer Manfred Rohde Markus Göker John C Detter Nikos C Kyrpides Tanja Woyke Peter J Schaap Caroline M Plugge Gerard Muyzer Jan Kuever Inês A C Pereira Sofiya N Parshina Rizlan Bernier-Latmani Alfons J M Stams Hans-Peter Klenk

Stand Genomic Sci 2012 Dec 11;7(2):304-19. Epub 2012 Dec 11.

Leibniz Institute DSMZ - German Collection of Microorganisms and Cell Cultures, Braunschweig, Germany.

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http://dx.doi.org/10.4056/sigs.3226659DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3569383PMC
December 2012

Complete genome sequence of the thermophilic, piezophilic, heterotrophic bacterium Marinitoga piezophila KA3.

Authors:
Susan Lucas James Han Alla Lapidus Jan-Fang Cheng Lynne A Goodwin Sam Pitluck Lin Peters Natalia Mikhailova Hazuki Teshima John C Detter Cliff Han Roxanne Tapia Miriam Land Loren Hauser Nikos C Kyrpides Natalia Ivanova Ioanna Pagani Pauline Vannier Phil Oger Douglas H Bartlett Kenneth M Noll Tanja Woyke Mohamed Jebbar

J Bacteriol 2012 Nov;194(21):5974-5

DOE Joint Genome Institute, Walnut Creek, California, USA.

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http://jb.asm.org/content/194/21/5974.full.pdf
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http://jb.asm.org/cgi/doi/10.1128/JB.01430-12
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http://dx.doi.org/10.1128/JB.01430-12DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3486111PMC
November 2012

Complete genome sequences of Desulfosporosinus orientis DSM765T, Desulfosporosinus youngiae DSM17734T, Desulfosporosinus meridiei DSM13257T, and Desulfosporosinus acidiphilus DSM22704T.

Authors:
Michael Pester Evelyne Brambilla Didier Alazard Thomas Rattei Thomas Weinmaier James Han Susan Lucas Alla Lapidus Jan-Fang Cheng Lynne Goodwin Sam Pitluck Lin Peters Galina Ovchinnikova Hazuki Teshima John C Detter Cliff S Han Roxanne Tapia Miriam L Land Loren Hauser Nikos C Kyrpides Natalia N Ivanova Ioanna Pagani Marcel Huntmann Chia-Lin Wei Karen W Davenport Hajnalka Daligault Patrick S G Chain Amy Chen Konstantinos Mavromatis Victor Markowitz Ernest Szeto Natalia Mikhailova Amrita Pati Michael Wagner Tanja Woyke Bernard Ollivier Hans-Peter Klenk Stefan Spring Alexander Loy

J Bacteriol 2012 Nov;194(22):6300-1

Department of Microbial Ecology, Faculty of Life Sciences, University of Vienna, Vienna, Austria.

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http://dx.doi.org/10.1128/JB.01392-12DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3486391PMC
November 2012

Complete genome sequence of Desulfurococcus fermentans, a hyperthermophilic cellulolytic crenarchaeon isolated from a freshwater hot spring in Kamchatka, Russia.

Authors:
Dwi Susanti Eric F Johnson Jason R Rodriguez Iain Anderson Anna A Perevalova Nikos Kyrpides Susan Lucas James Han Alla Lapidus Jan-Fang Cheng Lynne Goodwin Sam Pitluck Konstantinos Mavrommatis Lin Peters Miriam L Land Loren Hauser Venkat Gopalan Patricia P Chan Todd M Lowe Haruyuki Atomi Elizaveta A Bonch-Osmolovskaya Tanja Woyke Biswarup Mukhopadhyay

J Bacteriol 2012 Oct;194(20):5703-4

Virginia Bioinformatics Institute, Virginia Tech, Blacksburg, Virginia, USA.

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http://dx.doi.org/10.1128/JB.01314-12DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3458677PMC
October 2012

Genome sequence of the button mushroom Agaricus bisporus reveals mechanisms governing adaptation to a humic-rich ecological niche.

Authors:
Emmanuelle Morin Annegret Kohler Adam R Baker Marie Foulongne-Oriol Vincent Lombard Laszlo G Nagy Robin A Ohm Aleksandrina Patyshakuliyeva Annick Brun Andrea L Aerts Andrew M Bailey Christophe Billette Pedro M Coutinho Greg Deakin Harshavardhan Doddapaneni Dimitrios Floudas Jane Grimwood Kristiina Hildén Ursula Kües Kurt M Labutti Alla Lapidus Erika A Lindquist Susan M Lucas Claude Murat Robert W Riley Asaf A Salamov Jeremy Schmutz Venkataramanan Subramanian Han A B Wösten Jianping Xu Daniel C Eastwood Gary D Foster Anton S M Sonnenberg Dan Cullen Ronald P de Vries Taina Lundell David S Hibbett Bernard Henrissat Kerry S Burton Richard W Kerrigan Michael P Challen Igor V Grigoriev Francis Martin

Proc Natl Acad Sci U S A 2012 Oct 8;109(43):17501-6. Epub 2012 Oct 8.

Institut National de la Recherche Agronomique, Unité Mixte de Recherche 1136 Université Henri Poincaré, Interactions Arbres/Micro-organismes, 54280 Champenoux, France.

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http://dx.doi.org/10.1073/pnas.1206847109DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3491501PMC
October 2012

Complete genome sequence of the plant-associated Serratia plymuthica strain AS13.

Authors:
Saraswoti Neupane Roger D Finlay Nikos C Kyrpides Lynne Goodwin Sadhna Alström Susan Lucas Miriam Land James Han Alla Lapidus Jan-Fang Cheng David Bruce Sam Pitluck Lin Peters Galina Ovchinnikova Brittany Held Cliff Han John C Detter Roxanne Tapia Loren Hauser Natalia Ivanova Ioanna Pagani Tanja Woyke Hans-Peter Klenk Nils Högberg

Stand Genomic Sci 2012 Oct 26;7(1):22-30. Epub 2012 Sep 26.

Department of Forest Mycology and Pathology, Swedish University of Agricultural Sciences, Uppsala, Sweden.

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http://dx.doi.org/10.4056/sigs.2966299DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3570797PMC
October 2012

Complete genome sequence of the facultatively chemolithoautotrophic and methylotrophic alpha Proteobacterium Starkeya novella type strain (ATCC 8093(T)).

Authors:
Ulrike Kappler Karen Davenport Scott Beatson Susan Lucas Alla Lapidus Alex Copeland Kerrie W Berry Tijana Glavina Del Rio Nancy Hammon Eileen Dalin Hope Tice Sam Pitluck Paul Richardson David Bruce Lynne A Goodwin Cliff Han Roxanne Tapia John C Detter Yun-Juan Chang Cynthia D Jeffries Miriam Land Loren Hauser Nikos C Kyrpides Markus Göker Natalia Ivanova Hans-Peter Klenk Tanja Woyke

Stand Genomic Sci 2012 Oct 26;7(1):44-58. Epub 2012 Sep 26.

The University of Queensland, Brisbane, Australia.

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http://dx.doi.org/10.4056/sigs.3006378DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3570799PMC
October 2012

Genome sequence of the Antarctic rhodopsins-containing flavobacterium Gillisia limnaea type strain (R-8282(T)).

Authors:
Thomas Riedel Brittany Held Matt Nolan Susan Lucas Alla Lapidus Hope Tice Tijana Glavina Del Rio Jan-Fang Cheng Cliff Han Roxanne Tapia Lynne A Goodwin Sam Pitluck Konstantinos Liolios Konstantinos Mavromatis Ioanna Pagani Natalia Ivanova Natalia Mikhailova Amrita Pati Amy Chen Krishna Palaniappan Miriam Land Manfred Rohde Brian J Tindall John C Detter Markus Göker James Bristow Jonathan A Eisen Victor Markowitz Philip Hugenholtz Nikos C Kyrpides Hans-Peter Klenk Tanja Woyke

Stand Genomic Sci 2012 Oct;7(1):107-19

HZI - Helmholtz Centre for Infection Research, Braunschweig, Germany.

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http://dx.doi.org/10.4056/sigs.3216895DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3570806PMC
October 2012

Genome sequence of the orange-pigmented seawater bacterium Owenweeksia hongkongensis type strain (UST20020801(T)).

Authors:
Thomas Riedel Brittany Held Matt Nolan Susan Lucas Alla Lapidus Hope Tice Tijana Glavina Del Rio Jan-Fang Cheng Cliff Han Roxanne Tapia Lynne A Goodwin Sam Pitluck Konstantinos Liolios Konstantinos Mavromatis Ioanna Pagani Natalia Ivanova Natalia Mikhailova Amrita Pati Amy Chen Krishna Palaniappan Manfred Rohde Brian J Tindall John C Detter Markus Göker Tanja Woyke James Bristow Jonathan A Eisen Victor Markowitz Philip Hugenholtz Hans-Peter Klenk Nikos C Kyrpides

Stand Genomic Sci 2012 Oct;7(1):120-30

HZI - Helmholtz Centre for Infection Research, Braunschweig, Germany.

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http://dx.doi.org/10.4056/sigs.3296896DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3570807PMC
October 2012

Comparative genomics of the white-rot fungi, Phanerochaete carnosa and P. chrysosporium, to elucidate the genetic basis of the distinct wood types they colonize.

Authors:
Hitoshi Suzuki Jacqueline MacDonald Khajamohiddin Syed Asaf Salamov Chiaki Hori Andrea Aerts Bernard Henrissat Ad Wiebenga Patricia A VanKuyk Kerrie Barry Erika Lindquist Kurt LaButti Alla Lapidus Susan Lucas Pedro Coutinho Yunchen Gong Masahiro Samejima Radhakrishnan Mahadevan Mamdouh Abou-Zaid Ronald P de Vries Kiyohiko Igarashi Jagjit S Yadav Igor V Grigoriev Emma R Master

BMC Genomics 2012 Sep 2;13:444. Epub 2012 Sep 2.

Department of Chemical Engineering & Applied Chemistry, University of Toronto, Toronto, ON, Canada.

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http://dx.doi.org/10.1186/1471-2164-13-444DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3463431PMC
September 2012

CT features of lymphobronchial tuberculosis in children, including complications and associated abnormalities.

Authors:
Susan Lucas Savvas Andronikou Pierre Goussard Robert Gie

Pediatr Radiol 2012 Aug 30;42(8):923-31. Epub 2012 May 30.

Department of Radiology, Faculty of Health Sciences, University of the Witwatersrand, 7 York Road, Parktown, Johannesburg 2001, South Africa.

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http://dx.doi.org/10.1007/s00247-012-2399-xDOI Listing
August 2012

Complete genome sequence of Thauera aminoaromatica strain MZ1T.

Authors:
Ke Jiang John Sanseverino Archana Chauhan Susan Lucas Alex Copeland Alla Lapidus Tijana Glavina Del Rio Eileen Dalin Hope Tice David Bruce Lynne Goodwin Sam Pitluck David Sims Thomas Brettin John C Detter Cliff Han Y J Chang Frank Larimer Miriam Land Loren Hauser Nikos C Kyrpides Natalia Mikhailova Scott Moser Patricia Jegier Dan Close Jennifer M Debruyn Ying Wang Alice C Layton Michael S Allen Gary S Sayler

Stand Genomic Sci 2012 Jul 20;6(3):325-35. Epub 2012 Jul 20.

Center for Environmental Biotechnology, The University of Tennessee, Knoxville, Tennessee, USA.

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http://dx.doi.org/10.4056/sigs.2696029DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3558969PMC
July 2012

Complete genome sequence of the moderately thermophilic mineral-sulfide-oxidizing firmicute Sulfobacillus acidophilus type strain (NAL(T)).

Authors:
Iain Anderson Olga Chertkov Amy Chen Elizabeth Saunders Alla Lapidus Matt Nolan Susan Lucas Nancy Hammon Shweta Deshpande Jan-Fang Cheng Cliff Han Roxanne Tapia Lynne A Goodwin Sam Pitluck Konstantinos Liolios Ioanna Pagani Natalia Ivanova Natalia Mikhailova Amrita Pati Krishna Palaniappan Miriam Land Chongle Pan Manfred Rohde Rüdiger Pukall Markus Göker John C Detter Tanja Woyke James Bristow Jonathan A Eisen Victor Markowitz Philip Hugenholtz Nikos C Kyrpides Hans-Peter Klenk Konstantinos Mavromatis

Stand Genomic Sci 2012 Jul 20;6(3):1-13. Epub 2012 Jul 20.

DOE Joint Genome Institute, Walnut Creek, California, USA.

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http://dx.doi.org/10.4056/sigs.2736042DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3558970PMC
July 2012

Complete Genome Sequence of Paenibacillus strain Y4.12MC10, a Novel Paenibacillus lautus strain Isolated from Obsidian Hot Spring in Yellowstone National Park.

Authors:
David A Mead Susan Lucas Alex Copeland Alla Lapidus Jan-Feng Cheng David C Bruce Lynne A Goodwin Sam Pitluck Olga Chertkov Xiaojing Zhang John C Detter Cliff S Han Roxanne Tapia Miriam Land Loren J Hauser Yun-Juan Chang Nikos C Kyrpides Natalia N Ivanova Galina Ovchinnikova Tanja Woyke Catherine Brumm Rebecca Hochstein Thomas Schoenfeld Phillip Brumm

Stand Genomic Sci 2012 Jul 27;6(3):381-400. Epub 2012 Jul 27.

Lucigen Corporation, Middleton, Wisconsin ; DOE Great Lakes Bioenergy Research Center, University of Wisconsin, Madison, Wisconsin.

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http://dx.doi.org/10.4056/sigs.2605792DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3558958PMC
July 2012

Insight into trade-off between wood decay and parasitism from the genome of a fungal forest pathogen.

Authors:
Ake Olson Andrea Aerts Fred Asiegbu Lassaad Belbahri Ourdia Bouzid Anders Broberg Björn Canbäck Pedro M Coutinho Dan Cullen Kerstin Dalman Giuliana Deflorio Linda T A van Diepen Christophe Dunand Sébastien Duplessis Mikael Durling Paolo Gonthier Jane Grimwood Carl Gunnar Fossdal David Hansson Bernard Henrissat Ari Hietala Kajsa Himmelstrand Dirk Hoffmeister Nils Högberg Timothy Y James Magnus Karlsson Annegret Kohler Ursula Kües Yong-Hwan Lee Yao-Cheng Lin Mårten Lind Erika Lindquist Vincent Lombard Susan Lucas Karl Lundén Emmanuelle Morin Claude Murat Jongsun Park Tommaso Raffaello Pierre Rouzé Asaf Salamov Jeremy Schmutz Halvor Solheim Jerry Ståhlberg Heriberto Vélëz Ronald P de Vries Ad Wiebenga Steve Woodward Igor Yakovlev Matteo Garbelotto Francis Martin Igor V Grigoriev Jan Stenlid

New Phytol 2012 Jun 28;194(4):1001-13. Epub 2012 Mar 28.

Department of Forest Mycology and Pathology, Swedish University of Agricultural Sciences, Uppsala, Sweden.

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http://dx.doi.org/10.1111/j.1469-8137.2012.04128.xDOI Listing
June 2012

The Paleozoic origin of enzymatic lignin decomposition reconstructed from 31 fungal genomes.

Authors:
Dimitrios Floudas Manfred Binder Robert Riley Kerrie Barry Robert A Blanchette Bernard Henrissat Angel T Martínez Robert Otillar Joseph W Spatafora Jagjit S Yadav Andrea Aerts Isabelle Benoit Alex Boyd Alexis Carlson Alex Copeland Pedro M Coutinho Ronald P de Vries Patricia Ferreira Keisha Findley Brian Foster Jill Gaskell Dylan Glotzer Paweł Górecki Joseph Heitman Cedar Hesse Chiaki Hori Kiyohiko Igarashi Joel A Jurgens Nathan Kallen Phil Kersten Annegret Kohler Ursula Kües T K Arun Kumar Alan Kuo Kurt LaButti Luis F Larrondo Erika Lindquist Albee Ling Vincent Lombard Susan Lucas Taina Lundell Rachael Martin David J McLaughlin Ingo Morgenstern Emanuelle Morin Claude Murat Laszlo G Nagy Matt Nolan Robin A Ohm Aleksandrina Patyshakuliyeva Antonis Rokas Francisco J Ruiz-Dueñas Grzegorz Sabat Asaf Salamov Masahiro Samejima Jeremy Schmutz Jason C Slot Franz St John Jan Stenlid Hui Sun Sheng Sun Khajamohiddin Syed Adrian Tsang Ad Wiebenga Darcy Young Antonio Pisabarro Daniel C Eastwood Francis Martin Dan Cullen Igor V Grigoriev David S Hibbett

Science 2012 Jun;336(6089):1715-9

Biology Department, Clark University, Worcester, MA 01610, USA.

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http://www.sciencemag.org/cgi/doi/10.1126/science.1221748
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http://dx.doi.org/10.1126/science.1221748DOI Listing
June 2012

A comparative genomics perspective on the genetic content of the alkaliphilic haloarchaeon Natrialba magadii ATCC 43099T.

Authors:
Shivakumara Siddaramappa Jean F Challacombe Rosana E Decastro Friedhelm Pfeiffer Diego E Sastre María I Giménez Roberto A Paggi John C Detter Karen W Davenport Lynne A Goodwin Nikos Kyrpides Roxanne Tapia Samuel Pitluck Susan Lucas Tanja Woyke Julie A Maupin-Furlow

BMC Genomics 2012 May 4;13:165. Epub 2012 May 4.

Los Alamos National Laboratory, DOE Joint Genome Institute, Los Alamos, NM 87545, USA.

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http://dx.doi.org/10.1186/1471-2164-13-165DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3403918PMC
May 2012

The genome of the polar eukaryotic microalga Coccomyxa subellipsoidea reveals traits of cold adaptation.

Authors:
Guillaume Blanc Irina Agarkova Jane Grimwood Alan Kuo Andrew Brueggeman David D Dunigan James Gurnon Istvan Ladunga Erika Lindquist Susan Lucas Jasmyn Pangilinan Thomas Pröschold Asaf Salamov Jeremy Schmutz Donald Weeks Takashi Yamada Alexandre Lomsadze Mark Borodovsky Jean-Michel Claverie Igor V Grigoriev James L Van Etten

Genome Biol 2012 May 25;13(5):R39. Epub 2012 May 25.

Structural and Genomic Information Laboratory, UMR7256 CNRS, Aix-Marseille University, Mediterranean Institute of Microbiology (FR3479), Marseille, FR-13385, France.

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http://dx.doi.org/10.1186/gb-2012-13-5-r39DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3446292PMC
May 2012

Complete genome sequence of the aquatic bacterium Runella slithyformis type strain (LSU 4(T)).

Authors:
Alex Copeland Xiaojing Zhang Monica Misra Alla Lapidus Matt Nolan Susan Lucas Shweta Deshpande Jan-Fang Cheng Roxanne Tapia Lynne A Goodwin Sam Pitluck Konstantinos Liolios Ioanna Pagani Natalia Ivanova Natalia Mikhailova Amrita Pati Amy Chen Krishna Palaniappan Miriam Land Loren Hauser Chongle Pan Cynthia D Jeffries John C Detter Evelyne-Marie Brambilla Manfred Rohde Olivier D Ngatchou Djao Markus Göker Johannes Sikorski Brian J Tindall Tanja Woyke James Bristow Jonathan A Eisen Victor Markowitz Philip Hugenholtz Nikos C Kyrpides Hans-Peter Klenk Konstantinos Mavromatis

Stand Genomic Sci 2012 May 4;6(2):145-54. Epub 2012 May 4.

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http://dx.doi.org/10.4056/sigs.2475579DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3387789PMC
May 2012

Complete genome sequence of the thermophilic sulfate-reducing ocean bacterium Thermodesulfatator indicus type strain (CIR29812(T)).

Authors:
Iain Anderson Elizabeth Saunders Alla Lapidus Matt Nolan Susan Lucas Hope Tice Tijana Glavina Del Rio Jan-Fang Cheng Cliff Han Roxanne Tapia Lynne A Goodwin Sam Pitluck Konstantinos Liolios Konstantinos Mavromatis Ioanna Pagani Natalia Ivanova Natalia Mikhailova Amrita Pati Amy Chen Krishna Palaniappan Miriam Land Loren Hauser Cynthia D Jeffries Yun-Juan Chang Evelyne-Marie Brambilla Manfred Rohde Stefan Spring Markus Göker John C Detter Tanja Woyke James Bristow Jonathan A Eisen Victor Markowitz Philip Hugenholtz Nikos C Kyrpides Hans-Peter Klenk

Stand Genomic Sci 2012 May 4;6(2):155-64. Epub 2012 May 4.

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http://dx.doi.org/10.4056/sigs.2665915DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3387792PMC
May 2012

Complete genome sequence of Serratia plymuthica strain AS12.

Authors:
Saraswoti Neupane Roger D Finlay Sadhna Alström Lynne Goodwin Nikos C Kyrpides Susan Lucas Alla Lapidus David Bruce Sam Pitluck Lin Peters Galina Ovchinnikova Olga Chertkov James Han Cliff Han Roxanne Tapia John C Detter Miriam Land Loren Hauser Jan-Fang Cheng Natalia Ivanova Ioanna Pagani Hans-Peter Klenk Tanja Woyke Nils Högberg

Stand Genomic Sci 2012 May 1;6(2):165-73. Epub 2012 May 1.

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http://dx.doi.org/10.4056/sigs.2705996DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3387793PMC
May 2012

Genome sequence of the homoacetogenic bacterium Holophaga foetida type strain (TMBS4(T)).

Authors:
Iain Anderson Brittany Held Alla Lapidus Matt Nolan Susan Lucas Hope Tice Tijana Glavina Del Rio Jan-Fang Cheng Cliff Han Roxanne Tapia Lynne A Goodwin Sam Pitluck Konstantinos Liolios Konstantinos Mavromatis Ioanna Pagani Natalia Ivanova Natalia Mikhailova Amrita Pati Amy Chen Krishna Palaniappan Miriam Land Evelyne-Marie Brambilla Manfred Rohde Stefan Spring Markus Göker John C Detter Tanja Woyke James Bristow Jonathan A Eisen Victor Markowitz Philip Hugenholtz Hans-Peter Klenk Nikos C Kyrpides

Stand Genomic Sci 2012 May 4;6(2):174-84. Epub 2012 May 4.

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http://dx.doi.org/10.4056/sigs.2746047DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3387795PMC
May 2012

Complete genome sequence of the facultatively anaerobic, appendaged bacterium Muricauda ruestringensis type strain (B1(T)).

Authors:
Marcel Huntemann Hazuki Teshima Alla Lapidus Matt Nolan Susan Lucas Nancy Hammon Shweta Deshpande Jan-Fang Cheng Roxanne Tapia Lynne A Goodwin Sam Pitluck Konstantinos Liolios Ioanna Pagani Natalia Ivanova Konstantinos Mavromatis Natalia Mikhailova Amrita Pati Amy Chen Krishna Palaniappan Miriam Land Loren Hauser Chongle Pan Evelyne-Marie Brambilla Manfred Rohde Stefan Spring Markus Göker John C Detter James Bristow Jonathan A Eisen Victor Markowitz Philip Hugenholtz Nikos C Kyrpides Hans-Peter Klenk Tanja Woyke

Stand Genomic Sci 2012 May 4;6(2):185-93. Epub 2012 May 4.

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http://www.standardsingenomics.org/index.php/sigen/article/v
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http://dx.doi.org/10.4056/sigs.2786069DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3387797PMC
May 2012

Complete genome sequence of the termite hindgut bacterium Spirochaeta coccoides type strain (SPN1(T)), reclassification in the genus Sphaerochaeta as Sphaerochaeta coccoides comb. nov. and emendations of the family Spirochaetaceae and the genus Sphaerochaeta.

Authors:
Birte Abt Cliff Han Carmen Scheuner Megan Lu Alla Lapidus Matt Nolan Susan Lucas Nancy Hammon Shweta Deshpande Jan-Fang Cheng Roxanne Tapia Lynne A Goodwin Sam Pitluck Konstantinos Liolios Ioanna Pagani Natalia Ivanova Konstantinos Mavromatis Natalia Mikhailova Marcel Huntemann Amrita Pati Amy Chen Krishna Palaniappan Miriam Land Loren Hauser Evelyne-Marie Brambilla Manfred Rohde Stefan Spring Sabine Gronow Markus Göker Tanja Woyke James Bristow Jonathan A Eisen Victor Markowitz Philip Hugenholtz Nikos C Kyrpides Hans-Peter Klenk John C Detter

Stand Genomic Sci 2012 May 4;6(2):194-209. Epub 2012 May 4.

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http://dx.doi.org/10.4056/sigs.2796069DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3388779PMC
May 2012

Permanent draft genome sequence of the gliding predator Saprospira grandis strain Sa g1 (= HR1).

Authors:
Konstantinos Mavromatis Olga Chertkov Alla Lapidus Matt Nolan Susan Lucas Hope Tice Tijana Glavina Del Rio Jan-Fang Cheng Cliff Han Roxanne Tapia David Bruce Lynne A Goodwin Sam Pitluck Marcel Huntemann Konstantinos Liolios Ioanna Pagani Natalia Ivanova Natalia Mikhailova Amrita Pati Amy Chen Krishna Palaniappan Miriam Land Evelyne-Marie Brambilla Manfred Rohde Stefan Spring Markus Göker John C Detter James Bristow Jonathan A Eisen Victor Markowitz Philip Hugenholtz Nikos C Kyrpides Hans-Peter Klenk Tanja Woyke

Stand Genomic Sci 2012 May 4;6(2):210-9. Epub 2012 May 4.

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http://dx.doi.org/10.4056/sigs.2816096DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3387799PMC
May 2012

Genome sequence of the soil bacterium Saccharomonospora azurea type strain (NA-128(T)).

Authors:
Hans-Peter Klenk Brittany Held Susan Lucas Alla Lapidus Alex Copeland Nancy Hammon Sam Pitluck Lynne A Goodwin Cliff Han Roxanne Tapia Evelyne-Marie Brambilla Gabriele Pötter Miriam Land Natalia Ivanova Manfred Rohde Markus Göker John C Detter Nikos C Kyrpides Tanja Woyke

Stand Genomic Sci 2012 May 5;6(2):220-9. Epub 2012 May 5.

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http://dx.doi.org/10.4056/sigs.2635833DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3387790PMC
May 2012

Genome sequence of the moderately thermophilic, amino-acid-degrading and sulfur-reducing bacterium Thermovirga lienii type strain (Cas60314(T)).

Authors:
Markus Göker Elisabeth Saunders Alla Lapidus Matt Nolan Susan Lucas Nancy Hammon Shweta Deshpande Jan-Fang Cheng Cliff Han Roxanne Tapia Lynne A Goodwin Sam Pitluck Konstantinos Liolios Konstantinos Mavromatis Ioanna Pagani Natalia Ivanova Natalia Mikhailova Amrita Pati Amy Chen Krishna Palaniappan Miriam Land Yun-Juan Chang Cynthia D Jeffries Evelyne-Marie Brambilla Manfred Rohde Stefan Spring John C Detter Tanja Woyke James Bristow Jonathan A Eisen Victor Markowitz Philip Hugenholtz Nikos C Kyrpides Hans-Peter Klenk

Stand Genomic Sci 2012 May 4;6(2):230-9. Epub 2012 May 4.

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http://dx.doi.org/10.4056/sigs.2726028DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3387794PMC
May 2012

Complete genome sequence of the orange-red pigmented, radioresistant Deinococcus proteolyticus type strain (MRP(T)).

Authors:
Alex Copeland Ahmet Zeytun Montri Yassawong Matt Nolan Susan Lucas Nancy Hammon Shweta Deshpande Jan-Fang Cheng Cliff Han Roxanne Tapia Lynne A Goodwin Sam Pitluck Konstantinos Mavromatis Konstantinos Liolios Ioanna Pagani Natalia Ivanova Natalia Mikhailova Amrita Pati Amy Chen Krishna Palaniappan Miriam Land Loren Hauser Cynthia D Jeffries Evelyne-Marie Brambilla Manfred Rohde Johannes Sikorski Rüdiger Pukall Markus Göker John C Detter Tanja Woyke James Bristow Jonathan A Eisen Victor Markowitz Philip Hugenholtz Nikos C Kyrpides Hans-Peter Klenk Alla Lapidus

Stand Genomic Sci 2012 May 27;6(2):240-50. Epub 2012 Apr 27.

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http://dx.doi.org/10.4056/sigs.2756060DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3387796PMC
May 2012

Genome sequence of the ocean sediment bacterium Saccharomonospora marina type strain (XMU15(T)).

Authors:
Hans-Peter Klenk Megan Lu Susan Lucas Alla Lapidus Alex Copeland Sam Pitluck Lynne A Goodwin Cliff Han Roxanne Tapia Evelyne-Marie Brambilla Gabriele Pötter Miriam Land Natalia Ivanova Manfred Rohde Markus Göker John C Detter Wen-Jun Li Nikos C Kyrpides Tanja Woyke

Stand Genomic Sci 2012 May 15;6(2):265-75. Epub 2012 May 15.

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http://dx.doi.org/10.4056/sigs.2655905DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3387791PMC
May 2012

Comparative genomics of Ceriporiopsis subvermispora and Phanerochaete chrysosporium provide insight into selective ligninolysis.

Authors:
Elena Fernandez-Fueyo Francisco J Ruiz-Dueñas Patricia Ferreira Dimitrios Floudas David S Hibbett Paulo Canessa Luis F Larrondo Tim Y James Daniela Seelenfreund Sergio Lobos Rubén Polanco Mario Tello Yoichi Honda Takahito Watanabe Takashi Watanabe Jae San Ryu Ryu Jae San Christian P Kubicek Monika Schmoll Jill Gaskell Kenneth E Hammel Franz J St John Amber Vanden Wymelenberg Grzegorz Sabat Sandra Splinter BonDurant Khajamohiddin Syed Jagjit S Yadav Harshavardhan Doddapaneni Venkataramanan Subramanian José L Lavín José A Oguiza Gumer Perez Antonio G Pisabarro Lucia Ramirez Francisco Santoyo Emma Master Pedro M Coutinho Bernard Henrissat Vincent Lombard Jon Karl Magnuson Ursula Kües Chiaki Hori Kiyohiko Igarashi Masahiro Samejima Benjamin W Held Kerrie W Barry Kurt M LaButti Alla Lapidus Erika A Lindquist Susan M Lucas Robert Riley Asaf A Salamov Dirk Hoffmeister Daniel Schwenk Yitzhak Hadar Oded Yarden Ronald P de Vries Ad Wiebenga Jan Stenlid Daniel Eastwood Igor V Grigoriev Randy M Berka Robert A Blanchette Phil Kersten Angel T Martinez Rafael Vicuna Dan Cullen

Proc Natl Acad Sci U S A 2012 Apr 20;109(14):5458-63. Epub 2012 Mar 20.

Centro de Investigaciones Biológicas, Consejo Superior de Investigaciones Cientificas, E-28040 Madrid, Spain.

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http://www.pnas.org/cgi/doi/10.1073/pnas.1119912109
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http://dx.doi.org/10.1073/pnas.1119912109DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3325662PMC
April 2012

The genome of the xerotolerant mold Wallemia sebi reveals adaptations to osmotic stress and suggests cryptic sexual reproduction.

Authors:
Mahajabeen Padamsee T K Arun Kumar Robert Riley Manfred Binder Alex Boyd Ana M Calvo Kentaro Furukawa Cedar Hesse Stefan Hohmann Tim Y James Kurt LaButti Alla Lapidus Erika Lindquist Susan Lucas Kari Miller Sourabha Shantappa Igor V Grigoriev David S Hibbett David J McLaughlin Joseph W Spatafora M Catherine Aime

Fungal Genet Biol 2012 Mar 4;49(3):217-26. Epub 2012 Feb 4.

Department of Plant Pathology and Crop Physiology, Louisiana State University Agricultural Center, Baton Rouge, LA 70803, United States.

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http://dx.doi.org/10.1016/j.fgb.2012.01.007DOI Listing
March 2012

Complete genome sequence of the aerobic, heterotroph Marinithermus hydrothermalis type strain (T1(T)) from a deep-sea hydrothermal vent chimney.

Authors:
Alex Copeland Wei Gu Montri Yasawong Alla Lapidus Susan Lucas Shweta Deshpande Ioanna Pagani Roxanne Tapia Jan-Fang Cheng Lynne A Goodwin Sam Pitluck Konstantinos Liolios Natalia Ivanova Konstantinos Mavromatis Natalia Mikhailova Amrita Pati Amy Chen Krishna Palaniappan Miriam Land Chongle Pan Evelyne-Marie Brambilla Manfred Rohde Brian J Tindall Johannes Sikorski Markus Göker John C Detter James Bristow Jonathan A Eisen Victor Markowitz Philip Hugenholtz Nikos C Kyrpides Hans-Peter Klenk Tanja Woyke

Stand Genomic Sci 2012 Mar 5;6(1):21-30. Epub 2012 Mar 5.

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http://dx.doi.org/10.4056/sigs.2435521DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3368408PMC
March 2012

Complete genome sequence of Halopiger xanaduensis type strain (SH-6(T)).

Authors:
Iain Anderson Brian J Tindall Manfred Rohde Susan Lucas James Han Alla Lapidus Jan-Fang Cheng Lynne Goodwin Sam Pitluck Lin Peters Amrita Pati Natalia Mikhailova Ioanna Pagani Hazuki Teshima Cliff Han Roxanne Tapia Miriam Land Tanja Woyke Hans-Peter Klenk Nikos Kyrpides Natalia Ivanova

Stand Genomic Sci 2012 Mar 5;6(1):31-42. Epub 2012 Mar 5.

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http://dx.doi.org/10.4056/sigs.2505605DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3368405PMC
March 2012

Complete genome sequence of the rapeseed plant-growth promoting Serratia plymuthica strain AS9.

Authors:
Saraswoti Neupane Nils Högberg Sadhna Alström Susan Lucas James Han Alla Lapidus Jan-Fang Cheng David Bruce Lynne Goodwin Sam Pitluck Lin Peters Galina Ovchinnikova Megan Lu Cliff Han John C Detter Roxanne Tapia Anne Fiebig Miriam Land Loren Hauser Nikos C Kyrpides Natalia Ivanova Ioanna Pagani Hans-Peter Klenk Tanja Woyke Roger D Finlay

Stand Genomic Sci 2012 Mar 5;6(1):54-62. Epub 2012 Mar 5.

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http://dx.doi.org/10.4056/sigs.2595762DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3368398PMC
March 2012

Complete genome sequence of Polynucleobacter necessarius subsp. asymbioticus type strain (QLW-P1DMWA-1(T)).

Authors:
Linda Meincke Alex Copeland Alla Lapidus Susan Lucas Kerrie W Berry Tijana Glavina Del Rio Nancy Hammon Eileen Dalin Hope Tice Sam Pitluck Paul Richardson David Bruce Lynne Goodwin Cliff Han Roxanne Tapia John C Detter Jeremy Schmutz Thomas Brettin Frank Larimer Miriam Land Loren Hauser Nikos C Kyrpides Natalia Ivanova Markus Göker Tanja Woyke Qinglong L Wu Matthias Pöckl Martin W Hahn Hans-Peter Klenk

Stand Genomic Sci 2012 Mar 5;6(1):74-83. Epub 2012 Mar 5.

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http://dx.doi.org/10.4056/sigs.2395367DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3368402PMC
March 2012

Complete genome sequence of the sulfur compounds oxidizing chemolithoautotroph Sulfuricurvum kujiense type strain (YK-1(T)).

Authors:
Cliff Han Oleg Kotsyurbenko Olga Chertkov Brittany Held Alla Lapidus Matt Nolan Susan Lucas Nancy Hammon Shweta Deshpande Jan-Fang Cheng Roxanne Tapia Lynne A Goodwin Sam Pitluck Konstantinos Liolios Ioanna Pagani Natalia Ivanova Konstantinos Mavromatis Natalia Mikhailova Amrita Pati Amy Chen Krishna Palaniappan Miriam Land Loren Hauser Yun-Juan Chang Cynthia D Jeffries Evelyne-Marie Brambilla Manfred Rohde Stefan Spring Johannes Sikorski Markus Göker Tanja Woyke James Bristow Jonathan A Eisen Victor Markowitz Philip Hugenholtz Nikos C Kyrpides Hans-Peter Klenk John C Detter

Stand Genomic Sci 2012 Mar 5;6(1):94-103. Epub 2012 Mar 5.

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http://dx.doi.org/10.4056/sigs.2456004DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3368400PMC
March 2012

Complete genome sequence of the aerobic marine methanotroph Methylomonas methanica MC09.

Authors:
Rich Boden Michael Cunliffe Julie Scanlan Hélène Moussard K Dimitri Kits Martin G Klotz Mike S M Jetten Stéphane Vuilleumier James Han Lin Peters Natalia Mikhailova Hazuki Teshima Roxanne Tapia Nikos Kyrpides Natalia Ivanova Ioanna Pagani Jan-Fang Cheng Lynne Goodwin Cliff Han Loren Hauser Miriam L Land Alla Lapidus Susan Lucas Sam Pitluck Tanja Woyke Lisa Stein J Colin Murrell

J Bacteriol 2011 Dec;193(24):7001-2

School of Life Sciences, University of Warwick, Coventry CV4 7AL, United Kingdom.

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http://jb.asm.org/cgi/doi/10.1128/JB.06267-11
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http://dx.doi.org/10.1128/JB.06267-11DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3232845PMC
December 2011

Complete genome sequence of Hirschia baltica type strain (IFAM 1418(T)).

Authors:
Olga Chertkov Pamela J B Brown David T Kysela Miguel A de Pedro Susan Lucas Alex Copeland Alla Lapidus Tijana Glavina Del Rio Hope Tice David Bruce Lynne Goodwin Sam Pitluck John C Detter Cliff Han Frank Larimer Yun-Juan Chang Cynthia D Jeffries Miriam Land Loren Hauser Nikos C Kyrpides Natalia Ivanova Galina Ovchinnikova Brian J Tindall Markus Göker Hans-Peter Klenk Yves V Brun

Stand Genomic Sci 2011 Dec 23;5(3):287-97. Epub 2011 Dec 23.

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http://dx.doi.org/10.4056/sigs.2205004DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3368421PMC
December 2011

Complete genome sequence of the filamentous gliding predatory bacterium Herpetosiphon aurantiacus type strain (114-95(T)).

Authors:
Hajnalka Kiss Markus Nett Nicole Domin Karin Martin Julia A Maresca Alex Copeland Alla Lapidus Susan Lucas Kerrie W Berry Tijana Glavina Del Rio Eileen Dalin Hope Tice Sam Pitluck Paul Richardson David Bruce Lynne Goodwin Cliff Han John C Detter Jeremy Schmutz Thomas Brettin Miriam Land Loren Hauser Nikos C Kyrpides Natalia Ivanova Markus Göker Tanja Woyke Hans-Peter Klenk Donald A Bryant

Stand Genomic Sci 2011 Dec 23;5(3):356-70. Epub 2011 Dec 23.

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http://dx.doi.org/10.4056/sigs.2194987DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3368417PMC
December 2011

Complete genome sequence of the halophilic and highly halotolerant Chromohalobacter salexigens type strain (1H11(T)).

Authors:
Alex Copeland Kathleen O'Connor Susan Lucas Alla Lapidus Kerrie W Berry John C Detter Tijana Glavina Del Rio Nancy Hammon Eileen Dalin Hope Tice Sam Pitluck David Bruce Lynne Goodwin Cliff Han Roxanne Tapia Elizabeth Saunders Jeremy Schmutz Thomas Brettin Frank Larimer Miriam Land Loren Hauser Carmen Vargas Joaquin J Nieto Nikos C Kyrpides Natalia Ivanova Markus Göker Hans-Peter Klenk Laszlo N Csonka Tanja Woyke

Stand Genomic Sci 2011 Dec 30;5(3):379-88. Epub 2011 Dec 30.

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http://dx.doi.org/10.4056/sigs.2285059DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3368415PMC
December 2011

Genome sequence of the filamentous, gliding Thiothrix nivea neotype strain (JP2(T)).

Authors:
Alla Lapidus Matt Nolan Susan Lucas Tijana Glavina Del Rio Hope Tice Jan-Fang Cheng Roxanne Tapia Cliff Han Lynne Goodwin Sam Pitluck Konstantinos Liolios Ioanna Pagani Natalia Ivanova Marcel Huntemann Konstantinos Mavromatis Natalia Mikhailova Amrita Pati Amy Chen Krishna Palaniappan Miriam Land Evelyne-Marie Brambilla Manfred Rohde Birte Abt Susanne Verbarg Markus Göker James Bristow Jonathan A Eisen Victor Markowitz Philip Hugenholtz Nikos C Kyrpides Hans-Peter Klenk Tanja Woyke

Stand Genomic Sci 2011 Dec 30;5(3):398-406. Epub 2011 Dec 30.

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http://dx.doi.org/10.4056/sigs.2344929DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3368414PMC
December 2011

Complete genome sequence of the thermophilic sulfur-reducer Desulfurobacterium thermolithotrophum type strain (BSA(T)) from a deep-sea hydrothermal vent.

Authors:
Markus Göker Hajnalka Daligault Romano Mwirichia Alla Lapidus Susan Lucas Shweta Deshpande Ioanna Pagani Roxanne Tapia Jan-Fang Cheng Lynne Goodwin Sam Pitluck Konstantinos Liolios Natalia Ivanova Konstantinos Mavromatis Natalia Mikhailova Amrita Pati Amy Chen Krishna Palaniappan Cliff Han Miriam Land Loren Hauser Chongle Pan Evelyne-Marie Brambilla Manfred Rohde Stefan Spring Johannes Sikorski Reinhard Wirth John C Detter Tanja Woyke James Bristow Jonathan A Eisen Victor Markowitz Philip Hugenholtz Nikos C Kyrpides Hans-Peter Klenk

Stand Genomic Sci 2011 Dec 30;5(3):407-15. Epub 2011 Dec 30.

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http://dx.doi.org/10.4056/sigs.2465574DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3368423PMC
December 2011

Genome sequence of the Arctic methanotroph Methylobacter tundripaludum SV96.

Authors:
Mette M Svenning Anne Grethe Hestnes Ingvild Wartiainen Lisa Y Stein Martin G Klotz Marina G Kalyuzhnaya Anja Spang Françoise Bringel Stéphane Vuilleumier Aurélie Lajus Claudine Médigue David C Bruce Jan-Fang Cheng Lynne Goodwin Natalia Ivanova James Han Cliff S Han Loren Hauser Brittany Held Miriam L Land Alla Lapidus Susan Lucas Matt Nolan Sam Pitluck Tanja Woyke

J Bacteriol 2011 Nov 1;193(22):6418-9. Epub 2011 Jul 1.

Department of Arctic and Marine Biology, University of Tromsoe, 9037 Tromsoe, Norway.

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http://dx.doi.org/10.1128/JB.05380-11DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3209220PMC
November 2011

Complete genome of the cellulolytic ruminal bacterium Ruminococcus albus 7.

Authors:
Garret Suen David M Stevenson David C Bruce Olga Chertkov Alex Copeland Jan-Feng Cheng Chris Detter John C Detter Lynne A Goodwin Cliff S Han Loren J Hauser Natalia N Ivanova Nikos C Kyrpides Miriam L Land Alla Lapidus Susan Lucas Galina Ovchinnikova Sam Pitluck Roxanne Tapia Tanja Woyke Julie Boyum David Mead Paul J Weimer

J Bacteriol 2011 Oct;193(19):5574-5

Department of Bacteriology, 4455 MSB, 1550 Linden Drive, University of Wisconsin-Madison, Madison, WI 53706, USA.

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http://jb.asm.org/cgi/doi/10.1128/JB.05621-11
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http://dx.doi.org/10.1128/JB.05621-11DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3187470PMC
October 2011

Comparative genomic analysis of the thermophilic biomass-degrading fungi Myceliophthora thermophila and Thielavia terrestris.

Authors:
Randy M Berka Igor V Grigoriev Robert Otillar Asaf Salamov Jane Grimwood Ian Reid Nadeeza Ishmael Tricia John Corinne Darmond Marie-Claude Moisan Bernard Henrissat Pedro M Coutinho Vincent Lombard Donald O Natvig Erika Lindquist Jeremy Schmutz Susan Lucas Paul Harris Justin Powlowski Annie Bellemare David Taylor Gregory Butler Ronald P de Vries Iris E Allijn Joost van den Brink Sophia Ushinsky Reginald Storms Amy J Powell Ian T Paulsen Liam D H Elbourne Scott E Baker Jon Magnuson Sylvie Laboissiere A John Clutterbuck Diego Martinez Mark Wogulis Alfredo Lopez de Leon Michael W Rey Adrian Tsang

Nat Biotechnol 2011 Oct 2;29(10):922-7. Epub 2011 Oct 2.

Novozymes, Inc., Davis, CA, USA.

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http://dx.doi.org/10.1038/nbt.1976DOI Listing
October 2011

Complete genome sequence of Staphylothermus hellenicus P8.

Authors:
Iain Anderson Reinhard Wirth Susan Lucas Alex Copeland Alla Lapidus Jan-Fang Cheng Lynne Goodwin Samuel Pitluck Karen Davenport John C Detter Cliff Han Roxanne Tapia Miriam Land Loren Hauser Amrita Pati Natalia Mikhailova Tanja Woyke Hans-Peter Klenk Nikos Kyrpides Natalia Ivanova

Stand Genomic Sci 2011 Oct 23;5(1):12-20. Epub 2011 Sep 23.

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http://dx.doi.org/10.4056/sigs.2054696DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3236042PMC
October 2011

Complete genome sequence of the gliding freshwater bacterium Fluviicola taffensis type strain (RW262).

Authors:
Tanja Woyke Olga Chertkov Alla Lapidus Matt Nolan Susan Lucas Tijana Glavina Del Rio Hope Tice Jan-Fang Cheng Roxanne Tapia Cliff Han Lynne Goodwin Sam Pitluck Konstantinos Liolios Ioanna Pagani Natalia Ivanova Marcel Huntemann Konstantinos Mavromatis Natalia Mikhailova Amrita Pati Amy Chen Krishna Palaniappan Miriam Land Loren Hauser Evelyne-Marie Brambilla Manfred Rohde Romano Mwirichia Johannes Sikorski Brian J Tindall Markus Göker James Bristow Jonathan A Eisen Victor Markowitz Philip Hugenholtz Hans-Peter Klenk Nikos C Kyrpides

Stand Genomic Sci 2011 Oct 23;5(1):21-9. Epub 2011 Sep 23.

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http://dx.doi.org/10.4056/sigs.2124912DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3236050PMC
October 2011

Complete genome sequence of the gliding, heparinolytic Pedobacter saltans type strain (113).

Authors:
Konstantinos Liolios Johannes Sikorski Meagan Lu Matt Nolan Alla Lapidus Susan Lucas Nancy Hammon Shweta Deshpande Jan-Fang Cheng Roxanne Tapia Cliff Han Lynne Goodwin Sam Pitluck Marcel Huntemann Natalia Ivanova Ioanna Pagani Konstantinos Mavromatis Galina Ovchinikova Amrita Pati Amy Chen Krishna Palaniappan Miriam Land Loren Hauser Evelyne-Marie Brambilla Oleg Kotsyurbenko Manfred Rohde Brian J Tindall Birte Abt Markus Göker John C Detter Tanja Woyke James Bristow Jonathan A Eisen Victor Markowitz Philip Hugenholtz Hans-Peter Klenk Nikos C Kyrpides

Stand Genomic Sci 2011 Oct 23;5(1):30-40. Epub 2011 Sep 23.

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http://dx.doi.org/10.4056/sigs.2154937DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3236043PMC
October 2011

Non-contiguous finished genome sequence of the opportunistic oral pathogen Prevotella multisaccharivorax type strain (PPPA20).

Authors:
Amrita Pati Sabine Gronow Megan Lu Alla Lapidus Matt Nolan Susan Lucas Nancy Hammon Shweta Deshpande Jan-Fang Cheng Roxanne Tapia Cliff Han Lynne Goodwin Sam Pitluck Konstantinos Liolios Ioanna Pagani Konstantinos Mavromatis Natalia Mikhailova Marcel Huntemann Amy Chen Krishna Palaniappan Miriam Land Loren Hauser John C Detter Evelyne-Marie Brambilla Manfred Rohde Markus Göker Tanja Woyke James Bristow Jonathan A Eisen Victor Markowitz Philip Hugenholtz Nikos C Kyrpides Hans-Peter Klenk Natalia Ivanova

Stand Genomic Sci 2011 Oct 23;5(1):41-9. Epub 2011 Sep 23.

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http://www.standardsingenomics.org/index.php/sigen/article/v
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http://dx.doi.org/10.4056/sigs.2164949DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3236051PMC
October 2011

Complete genome sequence of Ferroglobus placidus AEDII12DO.

Authors:
Iain Anderson Carla Risso Dawn Holmes Susan Lucas Alex Copeland Alla Lapidus Jan-Fang Cheng David Bruce Lynne Goodwin Samuel Pitluck Elizabeth Saunders Thomas Brettin John C Detter Cliff Han Roxanne Tapia Frank Larimer Miriam Land Loren Hauser Tanja Woyke Derek Lovley Nikos Kyrpides Natalia Ivanova

Stand Genomic Sci 2011 Oct 1;5(1):50-60. Epub 2011 Oct 1.

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http://dx.doi.org/10.4056/sigs.2225018DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3236036PMC
October 2011

Genome sequence of the moderately thermophilic halophile Flexistipes sinusarabici strain (MAS10).

Authors:
Alla Lapidus Olga Chertkov Matt Nolan Susan Lucas Nancy Hammon Shweta Deshpande Jan-Fang Cheng Roxanne Tapia Cliff Han Lynne Goodwin Sam Pitluck Konstantinos Liolios Ioanna Pagani Natalia Ivanova Marcel Huntemann Konstantinos Mavromatis Natalia Mikhailova Amrita Pati Amy Chen Krishna Palaniappan Miriam Land Loren Hauser Evelyne-Marie Brambilla Manfred Rohde Birte Abt Stefan Spring Markus Göker James Bristow Jonathan A Eisen Victor Markowitz Philip Hugenholtz Nikos C Kyrpides Hans-Peter Klenk Tanja Woyke

Stand Genomic Sci 2011 Oct 23;5(1):86-96. Epub 2011 Sep 23.

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http://dx.doi.org/10.4056/sigs.2235024DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3236037PMC
October 2011

Non-contiguous finished genome sequence and contextual data of the filamentous soil bacterium Ktedonobacter racemifer type strain (SOSP1-21).

Authors:
Yun-Juan Chang Miriam Land Loren Hauser Olga Chertkov Tijana Glavina Del Rio Matt Nolan Alex Copeland Hope Tice Jan-Fang Cheng Susan Lucas Cliff Han Lynne Goodwin Sam Pitluck Natalia Ivanova Galina Ovchinikova Amrita Pati Amy Chen Krishna Palaniappan Konstantinos Mavromatis Konstantinos Liolios Thomas Brettin Anne Fiebig Manfred Rohde Birte Abt Markus Göker John C Detter Tanja Woyke James Bristow Jonathan A Eisen Victor Markowitz Philip Hugenholtz Nikos C Kyrpides Hans-Peter Klenk Alla Lapidus

Stand Genomic Sci 2011 Oct 1;5(1):97-111. Epub 2011 Oct 1.

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http://dx.doi.org/10.4056/sigs.2114901DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3236041PMC
October 2011

Complete genome sequence of Tolumonas auensis type strain (TA 4).

Authors:
Olga Chertkov Alex Copeland Susan Lucas Alla Lapidus Kerrie W Berry John C Detter Tijana Glavina Del Rio Nancy Hammon Eileen Dalin Hope Tice Sam Pitluck Paul Richardson David Bruce Lynne Goodwin Cliff Han Roxanne Tapia Elizabeth Saunders Jeremy Schmutz Thomas Brettin Frank Larimer Miriam Land Loren Hauser Stefan Spring Manfred Rohde Nikos C Kyrpides Natalia Ivanova Markus Göker Harry R Beller Hans-Peter Klenk Tanja Woyke

Stand Genomic Sci 2011 Oct 23;5(1):112-20. Epub 2011 Sep 23.

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http://dx.doi.org/10.4056/sigs.2184986DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3236046PMC
October 2011

Complete genome sequence of the thermophilic, hydrogen-oxidizing Bacillus tusciae type strain (T2) and reclassification in the new genus, Kyrpidia gen. nov. as Kyrpidia tusciae comb. nov. and emendation of the family Alicyclobacillaceae da Costa and Rainey, 2010.

Authors:
Hans-Peter Klenk Alla Lapidus Olga Chertkov Alex Copeland Tijana Glavina Del Rio Matt Nolan Susan Lucas Feng Chen Hope Tice Jan-Fang Cheng Cliff Han David Bruce Lynne Goodwin Sam Pitluck Amrita Pati Natalia Ivanova Konstantinos Mavromatis Chris Daum Amy Chen Krishna Palaniappan Yun-Juan Chang Miriam Land Loren Hauser Cynthia D Jeffries John C Detter Manfred Rohde Birte Abt Rüdiger Pukall Markus Göker James Bristow Victor Markowitz Philip Hugenholtz Jonathan A Eisen

Stand Genomic Sci 2011 Oct 23;5(1):121-34. Epub 2011 Sep 23.

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http://dx.doi.org/10.4056/sigs.2144922DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3236038PMC
October 2011

Complete genome sequence and updated annotation of Desulfovibrio alaskensis G20.

Authors:
Loren J Hauser Miriam L Land Steven D Brown Frank Larimer Kimberly L Keller Barbara J Rapp-Giles Morgan N Price Monica Lin David C Bruce John C Detter Roxanne Tapia Cliff S Han Lynne A Goodwin Jan-Fang Cheng Samuel Pitluck Alex Copeland Susan Lucas Matt Nolan Alla L Lapidus Anthony V Palumbo Judy D Wall

J Bacteriol 2011 Aug 17;193(16):4268-9. Epub 2011 Jun 17.

Biosciences Division, Oak Ridge National Laboratory, Oak Ridge, Tennessee 37831, USA.

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http://dx.doi.org/10.1128/JB.05400-11DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3147700PMC
August 2011

The plant cell wall-decomposing machinery underlies the functional diversity of forest fungi.

Authors:
Daniel C Eastwood Dimitrios Floudas Manfred Binder Andrzej Majcherczyk Patrick Schneider Andrea Aerts Fred O Asiegbu Scott E Baker Kerrie Barry Mika Bendiksby Melanie Blumentritt Pedro M Coutinho Dan Cullen Ronald P de Vries Allen Gathman Barry Goodell Bernard Henrissat Katarina Ihrmark Hävard Kauserud Annegret Kohler Kurt LaButti Alla Lapidus José L Lavin Yong-Hwan Lee Erika Lindquist Walt Lilly Susan Lucas Emmanuelle Morin Claude Murat José A Oguiza Jongsun Park Antonio G Pisabarro Robert Riley Anna Rosling Asaf Salamov Olaf Schmidt Jeremy Schmutz Inger Skrede Jan Stenlid Ad Wiebenga Xinfeng Xie Ursula Kües David S Hibbett Dirk Hoffmeister Nils Högberg Francis Martin Igor V Grigoriev Sarah C Watkinson

Science 2011 Aug 14;333(6043):762-5. Epub 2011 Jul 14.

College of Science, University of Swansea, Singleton Park, Swansea SA2 8PP, UK.

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http://dx.doi.org/10.1126/science.1205411DOI Listing
August 2011

Comparative genomics of xylose-fermenting fungi for enhanced biofuel production.

Authors:
Dana J Wohlbach Alan Kuo Trey K Sato Katlyn M Potts Asaf A Salamov Kurt M Labutti Hui Sun Alicia Clum Jasmyn L Pangilinan Erika A Lindquist Susan Lucas Alla Lapidus Mingjie Jin Christa Gunawan Venkatesh Balan Bruce E Dale Thomas W Jeffries Robert Zinkel Kerrie W Barry Igor V Grigoriev Audrey P Gasch

Proc Natl Acad Sci U S A 2011 Aug 25;108(32):13212-7. Epub 2011 Jul 25.

Department of Genetics, University of Wisconsin, Madison, WI 53706, USA.

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http://dx.doi.org/10.1073/pnas.1103039108DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3156214PMC
August 2011

Complete genome sequence of Rhodospirillum rubrum type strain (S1).

Authors:
A Christine Munk Alex Copeland Susan Lucas Alla Lapidus Tijana Glavina Del Rio Kerrie Barry John C Detter Nancy Hammon Sanjay Israni Sam Pitluck Thomas Brettin David Bruce Cliff Han Roxanne Tapia Paul Gilna Jeremy Schmutz Frank Larimer Miriam Land Nikos C Kyrpides Konstantinos Mavromatis Paul Richardson Manfred Rohde Markus Göker Hans-Peter Klenk Yaoping Zhang Gary P Roberts Susan Reslewic David C Schwartz

Stand Genomic Sci 2011 Jul 30;4(3):293-302. Epub 2011 Jun 30.

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http://dx.doi.org/10.4056/sigs.1804360DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3156396PMC
July 2011

Complete genome sequence of the thermophilic sulfur-reducer Hippea maritima type strain (MH(2)).

Authors:
Marcel Huntemann Megan Lu Matt Nolan Alla Lapidus Susan Lucas Nancy Hammon Shweta Deshpande Jan-Fang Cheng Roxanne Tapia Cliff Han Lynne Goodwin Sam Pitluck Konstantinos Liolios Ioanna Pagani Natalia Ivanova Galina Ovchinikova Amrita Pati Amy Chen Krishna Palaniappan Miriam Land Loren Hauser Cynthia D Jeffries John C Detter Evelyne-Marie Brambilla Manfred Rohde Stefan Spring Markus Göker Tanja Woyke James Bristow Jonathan A Eisen Victor Markowitz Philip Hugenholtz Nikos C Kyrpides Hans-Peter Klenk Konstantinos Mavromatis

Stand Genomic Sci 2011 Jul 30;4(3):303-11. Epub 2011 Jun 30.

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http://dx.doi.org/10.4056/sigs.1814460DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3156395PMC
July 2011

Complete genome sequence of the extremely halophilic Halanaerobium praevalens type strain (GSL).

Authors:
Natalia Ivanova Johannes Sikorski Olga Chertkov Matt Nolan Susan Lucas Nancy Hammon Shweta Deshpande Jan-Fang Cheng Roxanne Tapia Cliff Han Lynne Goodwin Sam Pitluck Marcel Huntemann Konstantinos Liolios Ioanna Pagani Konstantinos Mavromatis Galina Ovchinikova Amrita Pati Amy Chen Krishna Palaniappan Miriam Land Loren Hauser Evelyne-Marie Brambilla K Palani Kannan Manfred Rohde Brian J Tindall Markus Göker John C Detter Tanja Woyke James Bristow Jonathan A Eisen Victor Markowitz Philip Hugenholtz Nikos C Kyrpides Hans-Peter Klenk Alla Lapidus

Stand Genomic Sci 2011 Jul 30;4(3):312-21. Epub 2011 Jun 30.

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http://dx.doi.org/10.4056/sigs.1824509DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3156398PMC
July 2011

Complete genome sequence of Nitratifractor salsuginis type strain (E9I37-1).

Authors:
Iain Anderson Johannes Sikorski Ahmet Zeytun Matt Nolan Alla Lapidus Susan Lucas Nancy Hammon Shweta Deshpande Jan-Fang Cheng Roxanne Tapia Cliff Han Lynne Goodwin Sam Pitluck Konstantinos Liolios Ioanna Pagani Natalia Ivanova Marcel Huntemann Konstantinos Mavromatis Galina Ovchinikova Amrita Pati Amy Chen Krishna Palaniappan Miriam Land Loren Hauser Evelyne-Marie Brambilla Olivier D Ngatchou-Djao Manfred Rohde Brian J Tindall Markus Göker John C Detter Tanja Woyke James Bristow Jonathan A Eisen Victor Markowitz Philip Hugenholtz Hans-Peter Klenk Nikos C Kyrpides

Stand Genomic Sci 2011 Jul;4(3):322-30

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http://dx.doi.org/10.4056/sigs.1844518DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3156401PMC
July 2011

Complete genome sequence of Mahella australiensis type strain (50-1 BON).

Authors:
Johannes Sikorski Hazuki Teshima Matt Nolan Susan Lucas Nancy Hammon Shweta Deshpande Jan-Fang Cheng Sam Pitluck Konstantinos Liolios Ioanna Pagani Natalia Ivanova Marcel Huntemann Konstantinos Mavromatis Galina Ovchinikova Amrita Pati Roxanne Tapia Cliff Han Lynne Goodwin Amy Chen Krishna Palaniappan Miriam Land Loren Hauser Olivier D Ngatchou-Djao Manfred Rohde Rüdiger Pukall Stefan Spring Birte Abt Markus Göker John C Detter Tanja Woyke James Bristow Victor Markowitz Philip Hugenholtz Jonathan A Eisen Nikos C Kyrpides Hans-Peter Klenk Alla Lapidus

Stand Genomic Sci 2011 Jul 30;4(3):331-41. Epub 2011 Jun 30.

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http://dx.doi.org/10.4056/sigs.1864526DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3156404PMC
July 2011

Complete genome sequence of Tsukamurella paurometabola type strain (no. 33).

Authors:
A Christine Munk Alla Lapidus Susan Lucas Matt Nolan Hope Tice Jan-Fang Cheng Tijana Glavina Del Rio Lynne Goodwin Sam Pitluck Konstantinos Liolios Marcel Huntemann Natalia Ivanova Konstantinos Mavromatis Natalia Mikhailova Amrita Pati Amy Chen Krishna Palaniappan Roxanne Tapia Cliff Han Miriam Land Loren Hauser Yun-Juan Chang Cynthia D Jeffries Thomas Brettin Montri Yasawong Evelyne-Marie Brambilla Manfred Rohde Johannes Sikorski Markus Göker John C Detter Tanja Woyke James Bristow Jonathan A Eisen Victor Markowitz Philip Hugenholtz Nikos C Kyrpides Hans-Peter Klenk

Stand Genomic Sci 2011 Jul 30;4(3):342-51. Epub 2011 Jun 30.

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http://dx.doi.org/10.4056/sigs.1894556DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3156402PMC
July 2011

Complete genome sequence of Haliscomenobacter hydrossis type strain (O).

Authors:
Hajnalka Daligault Alla Lapidus Ahmet Zeytun Matt Nolan Susan Lucas Tijana Glavina Del Rio Hope Tice Jan-Fang Cheng Roxanne Tapia Cliff Han Lynne Goodwin Sam Pitluck Konstantinos Liolios Ioanna Pagani Natalia Ivanova Marcel Huntemann Konstantinos Mavromatis Natalia Mikhailova Amrita Pati Amy Chen Krishna Palaniappan Miriam Land Loren Hauser Evelyne-Marie Brambilla Manfred Rohde Susanne Verbarg Markus Göker James Bristow Jonathan A Eisen Victor Markowitz Philip Hugenholtz Nikos C Kyrpides Hans-Peter Klenk Tanja Woyke

Stand Genomic Sci 2011 Jul 30;4(3):352-60. Epub 2011 Jun 30.

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http://dx.doi.org/10.4056/sigs.1964579DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3156403PMC
July 2011

Complete genome sequence of Treponema succinifaciens type strain (6091).

Authors:
Cliff Han Sabine Gronow Hazuki Teshima Alla Lapidus Matt Nolan Susan Lucas Nancy Hammon Shweta Deshpande Jan-Fang Cheng Ahmed Zeytun Roxanne Tapia Lynne Goodwin Sam Pitluck Konstantinos Liolios Ioanna Pagani Natalia Ivanova Konstantinos Mavromatis Natalia Mikhailova Marcel Huntemann Amrita Pati Amy Chen Krishna Palaniappan Miriam Land Loren Hauser Evelyne-Marie Brambilla Manfred Rohde Markus Göker Tanja Woyke James Bristow Jonathan A Eisen Victor Markowitz Philip Hugenholtz Nikos C Kyrpides Hans-Peter Klenk John C Detter

Stand Genomic Sci 2011 Jul 30;4(3):361-70. Epub 2011 Jun 30.

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http://dx.doi.org/10.4056/sigs.1984594DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3156407PMC
July 2011

Complete genome sequence of Syntrophobotulus glycolicus type strain (FlGlyR).

Authors:
Cliff Han Romano Mwirichia Olga Chertkov Brittany Held Alla Lapidus Matt Nolan Susan Lucas Nancy Hammon Shweta Deshpande Jan-Fang Cheng Roxanne Tapia Lynne Goodwin Sam Pitluck Marcel Huntemann Konstantinos Liolios Natalia Ivanova Ioanna Pagani Konstantinos Mavromatis Galina Ovchinikova Amrita Pati Amy Chen Krishna Palaniappan Miriam Land Loren Hauser Evelyne-Marie Brambilla Manfred Rohde Stefan Spring Johannes Sikorski Markus Göker Tanja Woyke James Bristow Jonathan A Eisen Victor Markowitz Philip Hugenholtz Nikos C Kyrpides Hans-Peter Klenk John C Detter

Stand Genomic Sci 2011 Jul;4(3):371-80

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http://dx.doi.org/10.4056/sigs.2004684DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3156405PMC
July 2011

Complete genome sequence of the hyperthermophilic chemolithoautotroph Pyrolobus fumarii type strain (1A).

Authors:
Iain Anderson Markus Göker Matt Nolan Susan Lucas Nancy Hammon Shweta Deshpande Jan-Fang Cheng Roxanne Tapia Cliff Han Lynne Goodwin Sam Pitluck Marcel Huntemann Konstantinos Liolios Natalia Ivanova Ioanna Pagani Konstantinos Mavromatis Galina Ovchinikova Amrita Pati Amy Chen Krishna Palaniappan Miriam Land Loren Hauser Evelyne-Marie Brambilla Harald Huber Montri Yasawong Manfred Rohde Stefan Spring Birte Abt Johannes Sikorski Reinhard Wirth John C Detter Tanja Woyke James Bristow Jonathan A Eisen Victor Markowitz Philip Hugenholtz Nikos C Kyrpides Hans-Peter Klenk Alla Lapidus

Stand Genomic Sci 2011 Jul;4(3):381-92

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http://dx.doi.org/10.4056/sigs.2014648DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3156397PMC
July 2011

Complete genome sequence of the acetate-degrading sulfate reducer Desulfobacca acetoxidans type strain (ASRB2).

Authors:
Markus Göker Hazuki Teshima Alla Lapidus Matt Nolan Susan Lucas Nancy Hammon Shweta Deshpande Jan-Fang Cheng Roxanne Tapia Cliff Han Lynne Goodwin Sam Pitluck Marcel Huntemann Konstantinos Liolios Natalia Ivanova Ioanna Pagani Konstantinos Mavromatis Galina Ovchinikova Amrita Pati Amy Chen Krishna Palaniappan Miriam Land Loren Hauser Evelyne-Marie Brambilla Manfred Rohde Stefan Spring John C Detter Tanja Woyke James Bristow Jonathan A Eisen Victor Markowitz Philip Hugenholtz Nikos C Kyrpides Hans-Peter Klenk

Stand Genomic Sci 2011 Jul 30;4(3):393-401. Epub 2011 Jun 30.

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http://dx.doi.org/10.4056/sigs.2064705DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3156406PMC
July 2011

Complete genome sequence of Desulfurococcus mucosus type strain (O7/1).

Authors:
Reinhard Wirth Olga Chertkov Brittany Held Alla Lapidus Matt Nolan Susan Lucas Nancy Hammon Shweta Deshpande Jan-Fang Cheng Roxane Tapia Cliff Han Lynne Goodwin Sam Pitluck Konstantinos Liolios Pagani Ioanna Natalia Ivanova Konstantinos Mavromatis Natalia Mikhailova Amrita Pati Amy Chen Krishna Palaniappan Miriam Land Loren Hauser Yun-Juan Chang Cynthia D Jeffries Yvonne Bilek Thomas Hader Manfred Rohde Stefan Spring Johannes Sikorski Markus Göker Tanja Woyke James Bristow Jonathan A Eisen Victor Markowitz Philip Hugenholtz Nikos C Kyrpides Hans-Peter Klenk

Stand Genomic Sci 2011 Apr;4(2):173-82

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http://dx.doi.org/10.4056/sigs.1644004DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3111991PMC
April 2011

Complete genome sequence of Bacteroides salanitronis type strain (BL78).

Authors:
Sabine Gronow Brittany Held Susan Lucas Alla Lapidus Tijana Glavina Del Rio Matt Nolan Hope Tice Shweta Deshpande Jan-Fang Cheng Sam Pitluck Konstantinos Liolios Ioanna Pagani Natalia Ivanova Konstantinos Mavromatis Amrita Pati Roxane Tapia Cliff Han Lynne Goodwin Amy Chen Krishna Palaniappan Miriam Land Loren Hauser Yun-Juan Chang Cynthia D Jeffries Evelyne-Marie Brambilla Manfred Rohde Markus Göker John C Detter Tanja Woyke James Bristow Victor Markowitz Philip Hugenholtz Nikos C Kyrpides Hans-Peter Klenk Jonathan A Eisen

Stand Genomic Sci 2011 Apr;4(2):191-9

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http://www.standardsingenomics.org/index.php/sigen/article/v
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http://dx.doi.org/10.4056/sigs.1704212DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3111984PMC
April 2011

Complete genome sequence of Odoribacter splanchnicus type strain (1651/6).

Authors:
Markus Göker Sabine Gronow Ahmet Zeytun Matt Nolan Susan Lucas Alla Lapidus Nancy Hammon Shweta Deshpande Jan-Fang Cheng Sam Pitluck Konstantinos Liolios Ioanna Pagani Natalia Ivanova Konstantinos Mavromatis Galina Ovchinikova Amrita Pati Roxane Tapia Cliff Han Lynne Goodwin Amy Chen Krishna Palaniappan Miriam Land Loren Hauser Cynthia D Jeffries Evelyne-Marie Brambilla Manfred Rohde John C Detter Tanja Woyke James Bristow Victor Markowitz Philip Hugenholtz Jonathan A Eisen Nikos C Kyrpides Hans-Peter Klenk

Stand Genomic Sci 2011 Apr;4(2):200-9

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http://dx.doi.org/10.4056/sigs.1714269DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3111987PMC
April 2011

Complete genome sequence of Oceanithermus profundus type strain (506).

Authors:
Amrita Pati Xiaojing Zhang Alla Lapidus Matt Nolan Susan Lucas Tijana Glavina Del Rio Hope Tice Jan-Fang Cheng Roxane Tapia Cliff Han Lynne Goodwin Sam Pitluck Konstantinos Liolios Ioanna Pagani Natalia Ivanova Konstantinos Mavromatis Amy Chen Krishna Palaniappan Loren Hauser Cynthia D Jeffries Evelyne-Marie Brambilla Alina Röhl Romano Mwirichia Manfred Rohde Brian J Tindall Johannes Sikorski Reinhard Wirth Markus Göker Tanja Woyke John C Detter James Bristow Jonathan A Eisen Victor Markowitz Philip Hugenholtz Nikos C Kyrpides Hans-Peter Klenk Miriam Land

Stand Genomic Sci 2011 Apr;4(2):210-20

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http://dx.doi.org/10.4056/sigs.1734292DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3111992PMC
April 2011

Complete genome sequence of Cellulophaga lytica type strain (LIM-21).

Authors:
Amrita Pati Birte Abt Hazuki Teshima Matt Nolan Alla Lapidus Susan Lucas Nancy Hammon Shweta Deshpande Jan-Fang Cheng Roxane Tapia Cliff Han Lynne Goodwin Sam Pitluck Konstantinos Liolios Ioanna Pagani Konstantinos Mavromatis Galina Ovchinikova Amy Chen Krishna Palaniappan Miriam Land Loren Hauser Cynthia D Jeffries John C Detter Evelyne-Marie Brambilla K Palani Kannan Manfred Rohde Stefan Spring Markus Göker Tanja Woyke James Bristow Jonathan A Eisen Victor Markowitz Philip Hugenholtz Nikos C Kyrpides Hans-Peter Klenk Natalia Ivanova

Stand Genomic Sci 2011 Apr;4(2):221-32

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http://www.standardsingenomics.org/index.php/sigen/article/v
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http://dx.doi.org/10.4056/sigs.1774329DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3111997PMC
April 2011

Non-contiguous finished genome sequence of Bacteroides coprosuis type strain (PC139).

Authors:
Miriam Land Brittany Held Sabine Gronow Birte Abt Susan Lucas Tijana Glavina Del Rio Matt Nolan Hope Tice Jan-Fang Cheng Sam Pitluck Konstantinos Liolios Ioanna Pagani Natalia Ivanova Konstantinos Mavromatis Natalia Mikhailova Amrita Pati Roxane Tapia Cliff Han Lynne Goodwin Amy Chen Krishna Palaniappan Loren Hauser Evelyne-Marie Brambilla Manfred Rohde Markus Göker John C Detter Tanja Woyke James Bristow Jonathan A Eisen Victor Markowitz Philip Hugenholtz Nikos C Kyrpides Hans-Peter Klenk Alla Lapidus

Stand Genomic Sci 2011 Apr;4(2):233-43

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http://dx.doi.org/10.4056/sigs.1784330DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3111995PMC
April 2011