Suresh Mathivanan

Suresh Mathivanan

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Suresh Mathivanan

Publications by authors named "Suresh Mathivanan"

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Analysis of extracellular vesicles generated from monocytes under conditions of lytic cell death.

Sci Rep 2019 May 17;9(1):7538. Epub 2019 May 17.

Department of Biochemistry and Genetics, La Trobe Institute for Molecular Science, La Trobe University, Melbourne, Victoria, 3086, Australia.

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http://dx.doi.org/10.1038/s41598-019-44021-9DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6525174PMC
May 2019

Exosomes from N-Myc amplified neuroblastoma cells induce migration and confer chemoresistance to non-N-Myc amplified cells: implications of intra-tumour heterogeneity.

J Extracell Vesicles 2019 11;8(1):1597614. Epub 2019 Apr 11.

Department of Biochemistry and Genetics, La Trobe Institute for Molecular Science, La Trobe University, Melbourne, Australia.

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http://dx.doi.org/10.1080/20013078.2019.1597614DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6461098PMC
April 2019

Ticket to a bubble ride: Cargo sorting into exosomes and extracellular vesicles.

Biochim Biophys Acta Proteins Proteom 2019 Feb 26:140203. Epub 2019 Feb 26.

Department of Biochemistry and Genetics, La Trobe Institute for Molecular Science, La Trobe University, Bundoora, Victoria 3086, Australia. Electronic address:

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http://dx.doi.org/10.1016/j.bbapap.2019.02.005DOI Listing
February 2019

Vesiclepedia 2019: a compendium of RNA, proteins, lipids and metabolites in extracellular vesicles.

Nucleic Acids Res 2019 Jan;47(D1):D516-D519

Department of Biochemistry and Genetics, La Trobe Institute for Molecular Science, La Trobe University, Bundoora, Victoria 3086, Australia.

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https://academic.oup.com/nar/advance-article/doi/10.1093/nar
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http://dx.doi.org/10.1093/nar/gky1029DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6323905PMC
January 2019

Minimal information for studies of extracellular vesicles 2018 (MISEV2018): a position statement of the International Society for Extracellular Vesicles and update of the MISEV2014 guidelines.

Authors:
Clotilde Théry Kenneth W Witwer Elena Aikawa Maria Jose Alcaraz Johnathon D Anderson Ramaroson Andriantsitohaina Anna Antoniou Tanina Arab Fabienne Archer Georgia K Atkin-Smith D Craig Ayre Jean-Marie Bach Daniel Bachurski Hossein Baharvand Leonora Balaj Shawn Baldacchino Natalie N Bauer Amy A Baxter Mary Bebawy Carla Beckham Apolonija Bedina Zavec Abderrahim Benmoussa Anna C Berardi Paolo Bergese Ewa Bielska Cherie Blenkiron Sylwia Bobis-Wozowicz Eric Boilard Wilfrid Boireau Antonella Bongiovanni Francesc E Borràs Steffi Bosch Chantal M Boulanger Xandra Breakefield Andrew M Breglio Meadhbh Á Brennan David R Brigstock Alain Brisson Marike Ld Broekman Jacqueline F Bromberg Paulina Bryl-Górecka Shilpa Buch Amy H Buck Dylan Burger Sara Busatto Dominik Buschmann Benedetta Bussolati Edit I Buzás James Bryan Byrd Giovanni Camussi David Rf Carter Sarah Caruso Lawrence W Chamley Yu-Ting Chang Chihchen Chen Shuai Chen Lesley Cheng Andrew R Chin Aled Clayton Stefano P Clerici Alex Cocks Emanuele Cocucci Robert J Coffey Anabela Cordeiro-da-Silva Yvonne Couch Frank Aw Coumans Beth Coyle Rossella Crescitelli Miria Ferreira Criado Crislyn D'Souza-Schorey Saumya Das Amrita Datta Chaudhuri Paola de Candia Eliezer F De Santana Olivier De Wever Hernando A Del Portillo Tanguy Demaret Sarah Deville Andrew Devitt Bert Dhondt Dolores Di Vizio Lothar C Dieterich Vincenza Dolo Ana Paula Dominguez Rubio Massimo Dominici Mauricio R Dourado Tom Ap Driedonks Filipe V Duarte Heather M Duncan Ramon M Eichenberger Karin Ekström Samir El Andaloussi Celine Elie-Caille Uta Erdbrügger Juan M Falcón-Pérez Farah Fatima Jason E Fish Miguel Flores-Bellver András Försönits Annie Frelet-Barrand Fabia Fricke Gregor Fuhrmann Susanne Gabrielsson Ana Gámez-Valero Chris Gardiner Kathrin Gärtner Raphael Gaudin Yong Song Gho Bernd Giebel Caroline Gilbert Mario Gimona Ilaria Giusti Deborah Ci Goberdhan André Görgens Sharon M Gorski David W Greening Julia Christina Gross Alice Gualerzi Gopal N Gupta Dakota Gustafson Aase Handberg Reka A Haraszti Paul Harrison Hargita Hegyesi An Hendrix Andrew F Hill Fred H Hochberg Karl F Hoffmann Beth Holder Harry Holthofer Baharak Hosseinkhani Guoku Hu Yiyao Huang Veronica Huber Stuart Hunt Ahmed Gamal-Eldin Ibrahim Tsuneya Ikezu Jameel M Inal Mustafa Isin Alena Ivanova Hannah K Jackson Soren Jacobsen Steven M Jay Muthuvel Jayachandran Guido Jenster Lanzhou Jiang Suzanne M Johnson Jennifer C Jones Ambrose Jong Tijana Jovanovic-Talisman Stephanie Jung Raghu Kalluri Shin-Ichi Kano Sukhbir Kaur Yumi Kawamura Evan T Keller Delaram Khamari Elena Khomyakova Anastasia Khvorova Peter Kierulf Kwang Pyo Kim Thomas Kislinger Mikael Klingeborn David J Klinke Miroslaw Kornek Maja M Kosanović Árpád Ferenc Kovács Eva-Maria Krämer-Albers Susanne Krasemann Mirja Krause Igor V Kurochkin Gina D Kusuma Sören Kuypers Saara Laitinen Scott M Langevin Lucia R Languino Joanne Lannigan Cecilia Lässer Louise C Laurent Gregory Lavieu Elisa Lázaro-Ibáñez Soazig Le Lay Myung-Shin Lee Yi Xin Fiona Lee Debora S Lemos Metka Lenassi Aleksandra Leszczynska Isaac Ts Li Ke Liao Sten F Libregts Erzsebet Ligeti Rebecca Lim Sai Kiang Lim Aija Linē Karen Linnemannstöns Alicia Llorente Catherine A Lombard Magdalena J Lorenowicz Ákos M Lörincz Jan Lötvall Jason Lovett Michelle C Lowry Xavier Loyer Quan Lu Barbara Lukomska Taral R Lunavat Sybren Ln Maas Harmeet Malhi Antonio Marcilla Jacopo Mariani Javier Mariscal Elena S Martens-Uzunova Lorena Martin-Jaular M Carmen Martinez Vilma Regina Martins Mathilde Mathieu Suresh Mathivanan Marco Maugeri Lynda K McGinnis Mark J McVey David G Meckes Katie L Meehan Inge Mertens Valentina R Minciacchi Andreas Möller Malene Møller Jørgensen Aizea Morales-Kastresana Jess Morhayim François Mullier Maurizio Muraca Luca Musante Veronika Mussack Dillon C Muth Kathryn H Myburgh Tanbir Najrana Muhammad Nawaz Irina Nazarenko Peter Nejsum Christian Neri Tommaso Neri Rienk Nieuwland Leonardo Nimrichter John P Nolan Esther Nm Nolte-'t Hoen Nicole Noren Hooten Lorraine O'Driscoll Tina O'Grady Ana O'Loghlen Takahiro Ochiya Martin Olivier Alberto Ortiz Luis A Ortiz Xabier Osteikoetxea Ole Østergaard Matias Ostrowski Jaesung Park D Michiel Pegtel Hector Peinado Francesca Perut Michael W Pfaffl Donald G Phinney Bartijn Ch Pieters Ryan C Pink David S Pisetsky Elke Pogge von Strandmann Iva Polakovicova Ivan Kh Poon Bonita H Powell Ilaria Prada Lynn Pulliam Peter Quesenberry Annalisa Radeghieri Robert L Raffai Stefania Raimondo Janusz Rak Marcel I Ramirez Graça Raposo Morsi S Rayyan Neta Regev-Rudzki Franz L Ricklefs Paul D Robbins David D Roberts Silvia C Rodrigues Eva Rohde Sophie Rome Kasper Ma Rouschop Aurelia Rughetti Ashley E Russell Paula Saá Susmita Sahoo Edison Salas-Huenuleo Catherine Sánchez Julie A Saugstad Meike J Saul Raymond M Schiffelers Raphael Schneider Tine Hiorth Schøyen Aaron Scott Eriomina Shahaj Shivani Sharma Olga Shatnyeva Faezeh Shekari Ganesh Vilas Shelke Ashok K Shetty Kiyotaka Shiba Pia R-M Siljander Andreia M Silva Agata Skowronek Orman L Snyder Rodrigo Pedro Soares Barbara W Sódar Carolina Soekmadji Javier Sotillo Philip D Stahl Willem Stoorvogel Shannon L Stott Erwin F Strasser Simon Swift Hidetoshi Tahara Muneesh Tewari Kate Timms Swasti Tiwari Rochelle Tixeira Mercedes Tkach Wei Seong Toh Richard Tomasini Ana Claudia Torrecilhas Juan Pablo Tosar Vasilis Toxavidis Lorena Urbanelli Pieter Vader Bas Wm van Balkom Susanne G van der Grein Jan Van Deun Martijn Jc van Herwijnen Kendall Van Keuren-Jensen Guillaume van Niel Martin E van Royen Andre J van Wijnen M Helena Vasconcelos Ivan J Vechetti Tiago D Veit Laura J Vella Émilie Velot Frederik J Verweij Beate Vestad Jose L Viñas Tamás Visnovitz Krisztina V Vukman Jessica Wahlgren Dionysios C Watson Marca Hm Wauben Alissa Weaver Jason P Webber Viktoria Weber Ann M Wehman Daniel J Weiss Joshua A Welsh Sebastian Wendt Asa M Wheelock Zoltán Wiener Leonie Witte Joy Wolfram Angeliki Xagorari Patricia Xander Jing Xu Xiaomei Yan María Yáñez-Mó Hang Yin Yuana Yuana Valentina Zappulli Jana Zarubova Vytautas Žėkas Jian-Ye Zhang Zezhou Zhao Lei Zheng Alexander R Zheutlin Antje M Zickler Pascale Zimmermann Angela M Zivkovic Davide Zocco Ewa K Zuba-Surma

J Extracell Vesicles 2018 23;7(1):1535750. Epub 2018 Nov 23.

Jagiellonian University, Faculty of Biochemistry, Biophysics and Biotechnology, Department of Cell Biology, Kraków, Poland.

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https://www.tandfonline.com/doi/full/10.1080/20013078.2018.1
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http://dx.doi.org/10.1080/20013078.2018.1535750DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6322352PMC
November 2018

Emerging role of extracellular vesicles in mediating cancer cachexia.

Biochem Soc Trans 2018 10 20;46(5):1129-1136. Epub 2018 Sep 20.

Department of Biochemistry and Genetics, La Trobe Institute for Molecular Science, La Trobe University, Melbourne, Victoria 3086, Australia

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http://dx.doi.org/10.1042/BST20180213DOI Listing
October 2018

Arrestin-Domain Containing Protein 1 (Arrdc1) Regulates the Protein Cargo and Release of Extracellular Vesicles.

Proteomics 2018 09 20;18(17):e1800266. Epub 2018 Aug 20.

Center for Cancer Biology, University of South Australia and SA Pathology, Adelaide, South Australia, 5000, Australia.

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http://doi.wiley.com/10.1002/pmic.201800266
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http://dx.doi.org/10.1002/pmic.201800266DOI Listing
September 2018

Bioinformatics Tools for Extracellular Vesicles Research.

Methods Mol Biol 2017 ;1545:189-196

Department of Biochemistry and Genetics, La Trobe Institute for Molecular Science, La Trobe University, LIMS1, Bundoora, Melbourne, VIC, 3086, Australia.

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http://dx.doi.org/10.1007/978-1-4939-6728-5_13DOI Listing
February 2018

Proteomic Data Storage and Sharing.

Methods Mol Biol 2017 ;1549:5-15

Department of Biochemistry and Genetics, La Trobe Institute for Molecular Science, La Trobe University, Melbourne, VIC, 3086, Australia.

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http://dx.doi.org/10.1007/978-1-4939-6740-7_2DOI Listing
February 2018

Label-Based and Label-Free Strategies for Protein Quantitation.

Methods Mol Biol 2017 ;1549:31-43

Department of Biochemistry and Genetics, La Trobe Institute for Molecular Science, La Trobe University, Melbourne, VIC, 3086, Australia.

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http://dx.doi.org/10.1007/978-1-4939-6740-7_4DOI Listing
February 2018

Unassigned MS/MS Spectra: Who Am I?

Methods Mol Biol 2017 ;1549:67-74

Department of Biochemistry and Genetics, La Trobe Institute for Molecular Science, La Trobe University, Melbourne, VIC, 3086, Australia.

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http://dx.doi.org/10.1007/978-1-4939-6740-7_6DOI Listing
February 2018

Proteotypic Peptides and Their Applications.

Methods Mol Biol 2017 ;1549:101-107

Department of Biochemistry and Genetics, La Trobe Institute for Molecular Science, La Trobe University, Melbourne, VIC, 3086, Australia.

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http://dx.doi.org/10.1007/978-1-4939-6740-7_8DOI Listing
February 2018

Network Tools for the Analysis of Proteomic Data.

Methods Mol Biol 2017 ;1549:177-197

Department of Computer Science and Information Technology, School of Engineering and Mathematical Sciencesy, La Trobe University, Melbourne, VIC, 3086, Australia.

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http://dx.doi.org/10.1007/978-1-4939-6740-7_14DOI Listing
February 2018

Autotransporter Adhesins in Escherichia coli Pathogenesis.

Proteomics 2017 Dec 12;17(23-24). Epub 2017 Oct 12.

Department of Biochemistry and Genetics, La Trobe Institute for Molecular Science, La Trobe University, Melbourne, Victoria, Australia.

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http://dx.doi.org/10.1002/pmic.201600431DOI Listing
December 2017

Secreted Tumor Antigens - Immune Biomarkers for Diagnosis and Therapy.

Proteomics 2017 Dec 25;17(23-24). Epub 2017 Oct 25.

Department of Biochemistry and Genetics, La Trobe Institute for Molecular Science, La Trobe University, Bundoora, Victoria, Australia.

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http://dx.doi.org/10.1002/pmic.201600442DOI Listing
December 2017

Insulin Mediated Activation of PI3K/Akt Signalling Pathway Modifies the Proteomic Cargo of Extracellular Vesicles.

Proteomics 2017 Dec 16;17(23-24). Epub 2017 Oct 16.

Department of Biochemistry and Genetics, La Trobe Institute for Molecular Science, La Trobe University, Bundoora, Victoria, Australia.

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http://dx.doi.org/10.1002/pmic.201600371DOI Listing
December 2017

Proteomic Profiling of Exosomes Secreted by Breast Cancer Cells with Varying Metastatic Potential.

Proteomics 2017 Dec;17(23-24)

Department of Biochemistry and Genetics, La Trobe Institute for Molecular Science, La Trobe University, Bundoora, Victoria, Australia.

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http://dx.doi.org/10.1002/pmic.201600370DOI Listing
December 2017

Extracellular Matrix and the Extracellular Environment.

Proteomics 2017 12;17(23-24)

Editor and Chair of Communications, Australian Society for Biochemistry and Molecular Biology, Laboratory head, Department of Biochemistry and Genetics, La Trobe Institute for Molecular Sciences (LIMS), La Trobe University, Melbourne, Australia.

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http://dx.doi.org/10.1002/pmic.2017700185DOI Listing
December 2017

Sengers Syndrome-Associated Mitochondrial Acylglycerol Kinase Is a Subunit of the Human TIM22 Protein Import Complex.

Mol Cell 2017 Aug 14;67(3):457-470.e5. Epub 2017 Jul 14.

Department of Biochemistry and Molecular Biology and The Bio21 Molecular Science and Biotechnology Institute, The University of Melbourne, Parkville, VIC, Australia. Electronic address:

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http://dx.doi.org/10.1016/j.molcel.2017.06.014DOI Listing
August 2017

Bovine milk-derived exosomes from colostrum are enriched with proteins implicated in immune response and growth.

Sci Rep 2017 07 19;7(1):5933. Epub 2017 Jul 19.

Department of Biochemistry and Genetics, La Trobe Institute for Molecular Science, La Trobe University, Melbourne, Victoria, 3086, Australia.

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http://dx.doi.org/10.1038/s41598-017-06288-8DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5517456PMC
July 2017

Powerful differential expression analysis incorporating network topology for next-generation sequencing data.

Bioinformatics 2017 May;33(10):1505-1513

Department of Mathematics and Statistics, La Trobe University, Melbourne, VIC, Australia.

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http://dx.doi.org/10.1093/bioinformatics/btw833DOI Listing
May 2017

EV-TRACK: transparent reporting and centralizing knowledge in extracellular vesicle research.

Authors:
Jan Van Deun Pieter Mestdagh Patrizia Agostinis Özden Akay Sushma Anand Jasper Anckaert Zoraida Andreu Martinez Tine Baetens Els Beghein Laurence Bertier Geert Berx Janneke Boere Stephanie Boukouris Michel Bremer Dominik Buschmann James B Byrd Clara Casert Lesley Cheng Anna Cmoch Delphine Daveloose Eva De Smedt Seyma Demirsoy Victoria Depoorter Bert Dhondt Tom A P Driedonks Aleksandra Dudek Abdou Elsharawy Ilaria Floris Andrew D Foers Kathrin Gärtner Abhishek D Garg Edward Geeurickx Jan Gettemans Farzaneh Ghazavi Bernd Giebel Tom Groot Kormelink Grace Hancock Hetty Helsmoortel Andrew F Hill Vincent Hyenne Hina Kalra David Kim Joanna Kowal Sandra Kraemer Petra Leidinger Carina Leonelli Yaxuan Liang Lien Lippens Shu Liu Alessandra Lo Cicero Shaun Martin Suresh Mathivanan Prabhu Mathiyalagan Támas Matusek Gloria Milani Marta Monguió-Tortajada Liselot M Mus Dillon C Muth Andrea Németh Esther N M Nolte-'t Hoen Lorraine O'Driscoll Roberta Palmulli Michael W Pfaffl Bjarke Primdal-Bengtson Erminia Romano Quentin Rousseau Susmita Sahoo Natalia Sampaio Monisha Samuel Benjamin Scicluna Bieke Soen Anneleen Steels Johannes V Swinnen Maarit Takatalo Safia Thaminy Clotilde Théry Joeri Tulkens Isabel Van Audenhove Susanne van der Grein Alan Van Goethem Martijn J van Herwijnen Guillaume Van Niel Nadine Van Roy Alexander R Van Vliet Niels Vandamme Suzanne Vanhauwaert Glenn Vergauwen Frederik Verweij Annelynn Wallaert Marca Wauben Kenneth W Witwer Marijke I Zonneveld Olivier De Wever Jo Vandesompele An Hendrix

Nat Methods 2017 02;14(3):228-232

Laboratory of Experimental Cancer Research, Department of Radiation Oncology and Experimental Cancer Research, Cancer Research Institute Ghent (CRIG), Ghent University, Ghent, Belgium.

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http://dx.doi.org/10.1038/nmeth.4185DOI Listing
February 2017

The International Society for Extracellular Vesicles launches the first massive open online course on extracellular vesicles.

J Extracell Vesicles 2016 16;5:34299. Epub 2016 Dec 16.

Krefting Research Centre, Institution of Medicine at Sahlgrenska Academy, University of Gothenburg, Gothenburg, Sweden.

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http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5165052PMC
http://dx.doi.org/10.3402/jev.v5.34299DOI Listing
December 2016

Cortactin enhances exosome secretion without altering cargo.

J Cell Biol 2016 07;214(2):129-31

Department of Biochemistry and Genetics, La Trobe Institute for Molecular Science, La Trobe University, Melbourne, Victoria, 3086, Australia

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http://dx.doi.org/10.1083/jcb.201606131DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4949455PMC
July 2016

Regulation of the divalent metal ion transporter via membrane budding.

Cell Discov 2016 21;2:16011. Epub 2016 Jun 21.

Centre for Cancer Biology, University of South Australia , Adelaide, South Australia , Australia.

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http://dx.doi.org/10.1038/celldisc.2016.11DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4914834PMC
July 2016

ExoCarta: A Web-Based Compendium of Exosomal Cargo.

J Mol Biol 2016 Feb 3;428(4):688-692. Epub 2015 Oct 3.

Department of Biochemistry and Genetics, La Trobe Institute for Molecular Science, La Trobe University, Melbourne, VIC 3086, Australia. Electronic address:

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http://dx.doi.org/10.1016/j.jmb.2015.09.019DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4783248PMC
February 2016

Focus on Extracellular Vesicles: Introducing the Next Small Big Thing.

Int J Mol Sci 2016 Feb 6;17(2):170. Epub 2016 Feb 6.

Department of Biochemistry and Genetics, La Trobe Institute for Molecular Science, La Trobe University, Melbourne, VIC 3086, Australia.

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http://dx.doi.org/10.3390/ijms17020170DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4783904PMC
February 2016

Extracellular peptidases of the cereal pathogen Fusarium graminearum.

Front Plant Sci 2015 6;6:962. Epub 2015 Nov 6.

Department of Biochemistry and Genetics, La Trobe Institute for Molecular Science, La Trobe University Melbourne, VIC, Australia.

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http://dx.doi.org/10.3389/fpls.2015.00962DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4645717PMC
December 2015

Rapid and comprehensive 'shotgun' lipidome profiling of colorectal cancer cell derived exosomes.

Methods 2015 Oct 20;87:83-95. Epub 2015 Apr 20.

Department of Chemistry, Michigan State University, East Lansing, MI 48824, USA; School of Chemistry, Department of Biochemistry and Molecular Biology, Bio21 Molecular Science and Biotechnology Institute, University of Melbourne, Parkville, Victoria 3010, Australia. Electronic address:

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http://dx.doi.org/10.1016/j.ymeth.2015.04.014DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4615275PMC
October 2015

Extracellular vesicles including exosomes in cross kingdom regulation: a viewpoint from plant-fungal interactions.

Front Plant Sci 2015 23;6:766. Epub 2015 Sep 23.

Department of Biochemistry and Genetics, La Trobe Institute for Molecular Science, La Trobe University Melbourne, VIC, Australia.

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http://journal.frontiersin.org/Article/10.3389/fpls.2015.007
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http://dx.doi.org/10.3389/fpls.2015.00766DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4585280PMC
October 2015

Proteogenomic analysis reveals exosomes are more oncogenic than ectosomes.

Oncotarget 2015 Jun;6(17):15375-96

Department of Biochemistry, La Trobe Institute for Molecular Science, La Trobe University, Melbourne, Victoria, Australia.

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http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4558158PMC
http://dx.doi.org/10.18632/oncotarget.3801DOI Listing
June 2015

A novel mechanism of generating extracellular vesicles during apoptosis via a beads-on-a-string membrane structure.

Nat Commun 2015 Jun 15;6:7439. Epub 2015 Jun 15.

Department of Biochemistry and Genetics, La Trobe Institute for Molecular Science, La Trobe University, Melbourne, Victoria 3086, Australia.

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http://dx.doi.org/10.1038/ncomms8439DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4490561PMC
June 2015

Exosomes in bodily fluids are a highly stable resource of disease biomarkers.

Proteomics Clin Appl 2015 Apr 19;9(3-4):358-67. Epub 2015 Mar 19.

Department of Biochemistry, La Trobe Institute for Molecular Science, La Trobe University, Melbourne, Victoria, Australia.

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http://dx.doi.org/10.1002/prca.201400114DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5502131PMC
April 2015

EVpedia: a community web portal for extracellular vesicles research.

Bioinformatics 2015 Mar 10;31(6):933-9. Epub 2014 Nov 10.

Department of Life Sciences, Pohang University of Science and Technology, Pohang, Republic of Korea, Division of Integrative Biosciences and Biotechnology, Pohang University of Science and Technology, Pohang, Republic of Korea, Cardiovascular Medicine, Brigham and Women's Hospital, Harvard Medical School, Boston, MA, USA, Department of Clinical Immunology, Polish-American Institute of Paediatrics, Jagiellonian University Medical College, Cracow, Poland, Department of Nephrology and Hypertension, University Medical Center Utrecht, Utrecht, The Netherlands, Section of Oncology, Department of Clinical Sciences, Lund University, Lund, Sweden, The Feinstein Institute for Medical Research, Manhasset, NY, USA, Department of Microbiology, Biochemistry, and Immunology, Morehouse School of Medicine, Atlanta, GA, USA, Institute of Biomedicine and Molecular Immunology (IBIM), National Research Council (CNR), Palermo, Italy, Innovation in Vesicles and Cells for Application in Therapy, Germans Trias i Pujol Research Institute, Germans Trias i Pujol University Hospital, Badalona, Spain, INSERM, UMR837 JEAN-PIERRE Aubert Research Centre, Lille, France, Department of Genetics, Cell- and Immunobiology, Semmelweis University, Budapest, Hungary, Department of Biochemistry and Molecular Biology, BIO21 Molecular Science and Biotechnology Institute, The University of Melbourne, Melbourne, VIC, Australia, Institute of Cancer & Genetics, School of Medicine, Velindre Cancer Centre, Cardiff University, Cardiff, UK, Program in Cellular and Molecular Medicine at Boston Children's Hospital and Department of Cell Biology, Harvard Medical School, Boston, MA, USA, Section of Pulmonary, Critical Care and Sleep Medicine, Department of Internal Medicine, Yale University School of Medicine, New Haven, CT, USA, Department of Neurology, College of Medicine, University of Tennessee Health Science Center, Memphis, TN, USA, Cancer Biology Program, Samuel Oschin Comprehensive Cancer Institute, Cedars-Sinai M

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http://www.gene-quantification.com/kim-et-al-evpedia-2-2014.
Web Search
http://bioinformatics.oxfordjournals.org/content/31/6/933.fu
Web Search
http://bioinformatics.oxfordjournals.org/cgi/doi/10.1093/bio
Publisher Site
http://dx.doi.org/10.1093/bioinformatics/btu741DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4375401PMC
March 2015

Extracellular vesicles including exosomes are mediators of signal transduction: are they protective or pathogenic?

Proteomics 2015 Jan 18;15(2-3):260-71. Epub 2014 Dec 18.

Department of Biochemistry, La Trobe Institute for Molecular Science, La Trobe University, Melbourne, Victoria, Australia.

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http://dx.doi.org/10.1002/pmic.201400234DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4419270PMC
January 2015

Extracellular vesicles from neural stem cells transfer IFN-γ via Ifngr1 to activate Stat1 signaling in target cells.

Mol Cell 2014 Oct 18;56(2):193-204. Epub 2014 Sep 18.

John van Geest Centre for Brain Repair, Department of Clinical Neurosciences, and NIHR Biomedical Research Centre, University of Cambridge, CB2 0PY Cambridge, UK; Wellcome Trust-Medical Research Council Stem Cell Institute, Cambridge, UK. Electronic address:

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http://dx.doi.org/10.1016/j.molcel.2014.08.020DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4578249PMC
October 2014

Proteogenomic analysis of the Venturia pirina (Pear Scab Fungus) secretome reveals potential effectors.

J Proteome Res 2014 Aug 9;13(8):3635-44. Epub 2014 Jul 9.

Department of Biochemistry, La Trobe Institute for Molecular Science, La Trobe University , Melbourne, Victoria 3086, Australia.

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http://dx.doi.org/10.1021/pr500176cDOI Listing
August 2014

Plasma Proteome Database as a resource for proteomics research: 2014 update.

Nucleic Acids Res 2014 Jan 3;42(Database issue):D959-65. Epub 2013 Dec 3.

Institute of Bioinformatics, International Technology Park, Bangalore 560 066, Karnataka, India, Amrita School of Biotechnology, Amrita University, Kollam 690 525, Kerala, India, Centre of Excellence in Bioinformatics, School of Life Sciences, Pondicherry University, Puducherry 605 014, India, Department of Biochemistry and Molecular Biology, Pondicherry University, Puducherry 605014, India, Department of Neurochemistry, National Institute of Mental Health and Neurosciences, Bangalore 560 022, Karnataka, India, Department of Biotechnology, Kuvempu University, Shankaraghatta 577 451, Karnataka, India, Government Medical College, Bhavnagar 364 001, Gujarat, India, Mahatma Gandhi Institute of Medical Sciences, Sevagram, Wardha 442 012, Maharashtra, India, The Department of Environmental Health Sciences, Johns Hopkins Bloomberg School of Public Health, Baltimore, MD 21205, USA, Department of Internal Medicine, Armed Forces Medical College, Pune 411 040, Maharashtra, India, Department of Neurology, National Institute of Mental Health and Neurosciences, Bangalore 560 022, Karnataka, India, Department of Biochemistry, La Trobe Institute for Molecular Science, La Trobe University, Melbourne, Victoria 3084, Australia, McKusick-Nathans Institute of Genetic Medicine, Johns Hopkins University, Baltimore, MD 21205, USA, Department of Biological Chemistry, Johns Hopkins University, Baltimore, MD 21205, USA, Department of Oncology, Johns Hopkins University, Baltimore, MD 21205, USA and Department of Pathology, Johns Hopkins University, Baltimore, MD 21205, USA.

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http://dx.doi.org/10.1093/nar/gkt1251DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3965042PMC
January 2014

Comparative proteomics evaluation of plasma exosome isolation techniques and assessment of the stability of exosomes in normal human blood plasma.

Proteomics 2013 Nov 18;13(22):3354-64. Epub 2013 Oct 18.

Department of Biochemistry, La Trobe Institute for Molecular Science, La Trobe University, Melbourne, Victoria, Australia.

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http://dx.doi.org/10.1002/pmic.201300282DOI Listing
November 2013

ExoCarta as a resource for exosomal research.

J Extracell Vesicles 2012 16;1. Epub 2012 Apr 16.

Department of Biochemistry, La Trobe Institute for Molecular Science, La Trobe University, Melbourne, Victoria, Australia.

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http://dx.doi.org/10.3402/jev.v1i0.18374DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3760644PMC
September 2013

Two distinct populations of exosomes are released from LIM1863 colon carcinoma cell-derived organoids.

Mol Cell Proteomics 2013 Mar 10;12(3):587-98. Epub 2012 Dec 10.

Department of Biochemistry, La Trobe Institute for Molecular Science, La Trobe University, Bundoora, Victoria, Australia.

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http://dx.doi.org/10.1074/mcp.M112.021303DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3591653PMC
March 2013

Identifying mutated proteins secreted by colon cancer cell lines using mass spectrometry.

J Proteomics 2012 Dec 13;76 Spec No.:141-9. Epub 2012 Jul 13.

Department of Biochemistry, La Trobe Institute for Molecular Science, La Trobe University, Melbourne, Victoria 3086, Australia.

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http://dx.doi.org/10.1016/j.jprot.2012.06.031DOI Listing
December 2012

Comparison of ultracentrifugation, density gradient separation, and immunoaffinity capture methods for isolating human colon cancer cell line LIM1863-derived exosomes.

Methods 2012 Feb 21;56(2):293-304. Epub 2012 Jan 21.

Department of Biochemistry, La Trobe Institute for Molecular Science, La Trobe University, Bundoora, Victoria, Australia.

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http://dx.doi.org/10.1016/j.ymeth.2012.01.002DOI Listing
February 2012

ExoCarta 2012: database of exosomal proteins, RNA and lipids.

Nucleic Acids Res 2012 Jan 11;40(Database issue):D1241-4. Epub 2011 Oct 11.

Department of Biochemistry, La Trobe Institute for Molecular Science, La Trobe University, Melbourne, Victoria 3086, Australia.

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http://dx.doi.org/10.1093/nar/gkr828DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3245025PMC
January 2012

Exosomes: extracellular organelles important in intercellular communication.

J Proteomics 2010 Sep 1;73(10):1907-20. Epub 2010 Jul 1.

Ludwig Institute for Cancer Research, Parkville, Victoria, Australia.

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http://dx.doi.org/10.1016/j.jprot.2010.06.006DOI Listing
September 2010

Proteomics analysis of A33 immunoaffinity-purified exosomes released from the human colon tumor cell line LIM1215 reveals a tissue-specific protein signature.

Mol Cell Proteomics 2010 Feb 16;9(2):197-208. Epub 2009 Oct 16.

Joint ProteomicS Laboratory, Ludwig Institute for Cancer Research and the Walter and Eliza Hall Institute of Medical Research, Parkville, Victoria 3050, Australia.

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http://dx.doi.org/10.1074/mcp.M900152-MCP200DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2830834PMC
February 2010

ExoCarta: A compendium of exosomal proteins and RNA.

Proteomics 2009 Nov;9(21):4997-5000

Joint ProteomicS Laboratory, Ludwig Institute for Cancer Research and the Walter and Eliza Hall Institute of Medical Research, Parkville, Victoria, Australia.

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http://dx.doi.org/10.1002/pmic.200900351DOI Listing
November 2009

Exosomes: proteomic insights and diagnostic potential.

Expert Rev Proteomics 2009 Jun;6(3):267-83

Ludwig Institute for Cancer Research, PO Box 2008, Royal Melbourne Hospital, Parkville, Victoria 3050, Australia.

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http://dx.doi.org/10.1586/epr.09.17DOI Listing
June 2009

Human Proteinpedia as a resource for clinical proteomics.

Mol Cell Proteomics 2008 Oct 23;7(10):2038-47. Epub 2008 Jun 23.

Institute of Bioinformatics, International Tech Park, Bangalore 560 066, India.

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http://www.mcponline.org/lookup/doi/10.1074/mcp.R800008-MCP2
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http://dx.doi.org/10.1074/mcp.R800008-MCP200DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2559939PMC
October 2008

Human Proteinpedia enables sharing of human protein data.

Authors:
Suresh Mathivanan Mukhtar Ahmed Natalie G Ahn Hainard Alexandre Ramars Amanchy Philip C Andrews Joel S Bader Brian M Balgley Marcus Bantscheff Keiryn L Bennett Erik Björling Blagoy Blagoev Ron Bose Samir K Brahmachari Alma S Burlingame Xosé R Bustelo Gerard Cagney Greg T Cantin Helene L Cardasis Julio E Celis Raghothama Chaerkady Feixia Chu Philip A Cole Catherine E Costello Robert J Cotter David Crockett James P DeLany Angelo M De Marzo Leroi V DeSouza Eric W Deutsch Eric Dransfield Gerard Drewes Arnaud Droit Michael J Dunn Kojo Elenitoba-Johnson Rob M Ewing Jennifer Van Eyk Vitor Faca Jayson Falkner Xiangming Fang Catherine Fenselau Daniel Figeys Pierre Gagné Cecilia Gelfi Kris Gevaert Jeffrey M Gimble Florian Gnad Renu Goel Pavel Gromov Samir M Hanash William S Hancock H C Harsha Gerald Hart Faith Hays Fuchu He Prashantha Hebbar Kenny Helsens Heiko Hermeking Winston Hide Karin Hjernø Denis F Hochstrasser Oliver Hofmann David M Horn Ralph H Hruban Nieves Ibarrola Peter James Ole N Jensen Pia Hønnerup Jensen Peter Jung Kumaran Kandasamy Indu Kheterpal Reiko F Kikuno Ulrike Korf Roman Körner Bernhard Kuster Min-Seok Kwon Hyoung-Joo Lee Young-Jin Lee Michael Lefevre Minna Lehvaslaiho Pierre Lescuyer Fredrik Levander Megan S Lim Christian Löbke Joseph A Loo Matthias Mann Lennart Martens Juan Martinez-Heredia Mark McComb James McRedmond Alexander Mehrle Rajasree Menon Christine A Miller Harald Mischak S Sujatha Mohan Riaz Mohmood Henrik Molina Michael F Moran James D Morgan Robert Moritz Martine Morzel David C Muddiman Anuradha Nalli J Daniel Navarro Thomas A Neubert Osamu Ohara Rafael Oliva Gilbert S Omenn Masaaki Oyama Young-Ki Paik Kyla Pennington Rainer Pepperkok Balamurugan Periaswamy Emanuel F Petricoin Guy G Poirier T S Keshava Prasad Samuel O Purvine B Abdul Rahiman Prasanna Ramachandran Y L Ramachandra Robert H Rice Jens Rick Ragna H Ronnholm Johanna Salonen Jean-Charles Sanchez Thierry Sayd Beerelli Seshi Kripa Shankari Shi Jun Sheng Vivekananda Shetty K Shivakumar Richard J Simpson Ravi Sirdeshmukh K W Michael Siu Jeffrey C Smith Richard D Smith David J States Sumio Sugano Matthew Sullivan Giulio Superti-Furga Maarit Takatalo Visith Thongboonkerd Jonathan C Trinidad Mathias Uhlen Joël Vandekerckhove Julian Vasilescu Timothy D Veenstra José-Manuel Vidal-Taboada Mauno Vihinen Robin Wait Xiaoyue Wang Stefan Wiemann Billy Wu Tao Xu John R Yates Jun Zhong Ming Zhou Yunping Zhu Petra Zurbig Akhilesh Pandey

Nat Biotechnol 2008 Feb;26(2):164-7

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http://dx.doi.org/10.1038/nbt0208-164DOI Listing
February 2008

Global proteomic profiling of phosphopeptides using electron transfer dissociation tandem mass spectrometry.

Proc Natl Acad Sci U S A 2007 Feb 7;104(7):2199-204. Epub 2007 Feb 7.

McKusick-Nathans Institute for Genetic Medicine, The Johns Hopkins University School of Medicine, Baltimore, MD 21205, USA.

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http://www.pnas.org/cgi/doi/10.1073/pnas.0611217104
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http://dx.doi.org/10.1073/pnas.0611217104DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC1794346PMC
February 2007