Publications by authors named "Surajit Banerjee"

55Publications

Crystal structure of bacteriophage T4 Spackle as determined by native SAD phasing.

Acta Crystallogr D Struct Biol 2020 Sep 25;76(Pt 9):899-904. Epub 2020 Aug 25.

Department of Biochemistry, Molecular Biology and Biophysics, University of Minnesota, Minneapolis, MN 55455, USA.

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http://dx.doi.org/10.1107/S2059798320010979DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC7466748PMC
September 2020

Erratum: Structures of collagen IV globular domains: insight into associated pathologies, folding and network assembly. Corrigendum.

IUCrJ 2020 Jul 13;7(Pt 4):777. Epub 2020 Jun 13.

Instituto de Biomedicina de Valencia, Consejo Superior de Investigaciones Científicas (IBV-CSIC), Jaume Roig 11, 46010 Valencia, Spain.

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http://dx.doi.org/10.1107/S2052252520007216DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC7340266PMC
July 2020

Structural and Functional Characterization of Phosphatidylinositol-Phosphate Biosynthesis in Mycobacteria.

J Mol Biol 2020 Aug 8;432(18):5137-5151. Epub 2020 May 8.

Department of Physiology and Cellular Biophysics, Columbia University, New York, NY 10032, USA. Electronic address:

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http://dx.doi.org/10.1016/j.jmb.2020.04.028DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC7483940PMC
August 2020

Active site plasticity and possible modes of chemical inhibition of the human DNA deaminase APOBEC3B.

FASEB Bioadv 2020 Jan 24;2(1):49-58. Epub 2019 Dec 24.

Department of Biochemistry, Molecular Biology and Biophysics University of Minnesota Minneapolis MN USA.

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http://dx.doi.org/10.1096/fba.2019-00068DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6996314PMC
January 2020

Structural insights into the promiscuous DNA binding and broad substrate selectivity of fowlpox virus resolvase.

Sci Rep 2020 01 15;10(1):393. Epub 2020 Jan 15.

Department of Biochemistry, Molecular Biology, and Biophysics, University of Minnesota, 6-155 Jackson Hall, 321 Church Street S.E. Minneapolis, Minneapolis, MN, 55455, USA.

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http://dx.doi.org/10.1038/s41598-019-56825-wDOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6962361PMC
January 2020

An overview of structure, function, and regulation of pyruvate kinases.

Protein Sci 2019 10 12;28(10):1771-1784. Epub 2019 Aug 12.

Department of Medicine, University of Alabama at Birmingham, Birmingham, Alabama.

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http://dx.doi.org/10.1002/pro.3691DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6739817PMC
October 2019

Fluorescent indomethacin-dansyl conjugates utilize the membrane-binding domain of cyclooxygenase-2 to block the opening to the active site.

J Biol Chem 2019 05 18;294(22):8690-8698. Epub 2019 Apr 18.

From the A. B. Hancock Jr. Memorial Laboratory for Cancer Research, Departments of Biochemistry, Chemistry, and Pharmacology, Vanderbilt Institute of Chemical Biology, Center in Molecular Toxicology, Vanderbilt-Ingram Cancer Center, Vanderbilt University School of Medicine, Nashville, Tennessee 37232,

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http://dx.doi.org/10.1074/jbc.RA119.007405DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6552414PMC
May 2019

Abnormal Cannabidiol Modulates Vitamin A Metabolism by Acting as a Competitive Inhibitor of CRBP1.

ACS Chem Biol 2019 03 18;14(3):434-448. Epub 2019 Feb 18.

Department of Medicine, College of Physicians and Surgeons , Columbia University , New York , NY , United States.

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http://dx.doi.org/10.1021/acschembio.8b01070DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6420351PMC
March 2019

Crystal Structure of the Double Homeodomain of DUX4 in Complex with DNA.

Cell Rep 2018 12;25(11):2955-2962.e3

Department of Biochemistry, Molecular Biology, and Biophysics, University of Minnesota, Minneapolis, MN 55455, USA. Electronic address:

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https://linkinghub.elsevier.com/retrieve/pii/S22111247183183
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http://dx.doi.org/10.1016/j.celrep.2018.11.060DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6463520PMC
December 2018

T4 DNA ligase structure reveals a prototypical ATP-dependent ligase with a unique mode of sliding clamp interaction.

Nucleic Acids Res 2018 11;46(19):10474-10488

Department of Biochemistry, Molecular Biology, and Biophysics, University of Minnesota, 6-155 Jackson Hall, 321 Church Street S.E. Minneapolis, MN 55455, USA.

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http://dx.doi.org/10.1093/nar/gky776DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6212786PMC
November 2018

Salt-bridge modulates differential calcium-mediated ligand binding to integrin α1- and α2-I domains.

Sci Rep 2018 02 13;8(1):2916. Epub 2018 Feb 13.

Department of Medicine, Vanderbilt University Medical Center, Nashville, TN, 37232-2372, USA.

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http://dx.doi.org/10.1038/s41598-018-21231-1DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5811549PMC
February 2018

Dual cyclooxygenase-fatty acid amide hydrolase inhibitor exploits novel binding interactions in the cyclooxygenase active site.

J Biol Chem 2018 03 11;293(9):3028-3038. Epub 2018 Jan 11.

From the A. B. Hancock, Jr. Memorial Laboratory for Cancer Research, Departments of Biochemistry, Chemistry, and Pharmacology, Vanderbilt Institute of Chemical Biology and Center in Molecular Toxicology, Vanderbilt Ingram Cancer Center, Vanderbilt University School of Medicine, Nashville, Tennessee 37232,

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http://dx.doi.org/10.1074/jbc.M117.802058DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5836124PMC
March 2018

The Antiviral and Cancer Genomic DNA Deaminase APOBEC3H Is Regulated by an RNA-Mediated Dimerization Mechanism.

Mol Cell 2018 01 28;69(1):75-86.e9. Epub 2017 Dec 28.

Department of Biochemistry, Molecular Biology and Biophysics, University of Minnesota, Minneapolis, MN 55455, USA; Masonic Cancer Center, University of Minnesota, Minneapolis, MN 55455, USA; Institute for Molecular Virology, University of Minnesota, Minneapolis, MN 55455, USA; Center for Genome Engineering, University of Minnesota, Minneapolis, MN 55455, USA; Howard Hughes Medical Institute, University of Minnesota, Minneapolis, MN 55455, USA. Electronic address:

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http://dx.doi.org/10.1016/j.molcel.2017.12.010DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5991973PMC
January 2018

Enzyme That Makes You Cry-Crystal Structure of Lachrymatory Factor Synthase from Allium cepa.

ACS Chem Biol 2017 09 26;12(9):2296-2304. Epub 2017 Jul 26.

Department of Pharmacology, School of Medicine, Case Western Reserve University , Cleveland, Ohio, United States.

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http://pubs.acs.org/doi/10.1021/acschembio.7b00336
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http://dx.doi.org/10.1021/acschembio.7b00336DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5693239PMC
September 2017

Structure and Spectroscopy of Alkene-Cleaving Dioxygenases Containing an Atypically Coordinated Non-Heme Iron Center.

Biochemistry 2017 06 19;56(22):2836-2852. Epub 2017 May 19.

Department of Pharmacology, School of Medicine, Case Western Reserve University , 10900 Euclid Avenue, Cleveland, Ohio 44106, United States.

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http://dx.doi.org/10.1021/acs.biochem.7b00251DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5541372PMC
June 2017

Structural Insights into the Drosophila melanogaster Retinol Dehydrogenase, a Member of the Short-Chain Dehydrogenase/Reductase Family.

Biochemistry 2016 Nov 16;55(47):6545-6557. Epub 2016 Nov 16.

Department of Pharmacology and Cleveland Center for Membrane and Structural Biology, School of Medicine, Case Western Reserve University , 10900 Euclid Avenue, Cleveland, Ohio 44106, United States.

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http://dx.doi.org/10.1021/acs.biochem.6b00907DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5154250PMC
November 2016

Antitumor Activity of Cytotoxic Cyclooxygenase-2 Inhibitors.

ACS Chem Biol 2016 11 19;11(11):3052-3060. Epub 2016 Sep 19.

Departments of Biochemistry, Chemistry, and Pharmacology, A.B. Hancock Memorial Laboratory for Cancer Research, Vanderbilt Institute of Chemical Biology, Vanderbilt University School of Medicine , 850 RRB, 2220 Pierce Ave., Nashville, Tennessee 37232, United States.

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http://dx.doi.org/10.1021/acschembio.6b00560DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5289892PMC
November 2016

Ligand Binding Induces Conformational Changes in Human Cellular Retinol-binding Protein 1 (CRBP1) Revealed by Atomic Resolution Crystal Structures.

J Biol Chem 2016 Apr 21;291(16):8528-40. Epub 2016 Feb 21.

From the Department of Pharmacology and the Cleveland Center for Membrane and Structural Biology, School of Medicine, Case Western Reserve University, Cleveland, Ohio 44106,

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http://dx.doi.org/10.1074/jbc.M116.714535DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4861425PMC
April 2016

Crystal structure of the Rous sarcoma virus intasome.

Nature 2016 Feb;530(7590):362-6

Department of Biochemistry, Molecular Biology and Biophysics, University of Minnesota, Minneapolis, Minnesota 55455, USA.

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http://dx.doi.org/10.1038/nature16950DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4881392PMC
February 2016

nido-Dicarbaborate Induces Potent and Selective Inhibition of Cyclooxygenase-2.

ChemMedChem 2016 Jan 18;11(2):175-8. Epub 2015 Jun 18.

Institut für Anorganische Chemie, Universität Leipzig, Johannisallee 29, 04103, Leipzig, Germany.

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http://dx.doi.org/10.1002/cmdc.201500199DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4900168PMC
January 2016

Binding of undamaged double stranded DNA to vaccinia virus uracil-DNA Glycosylase.

BMC Struct Biol 2015 Jun 2;15:10. Epub 2015 Jun 2.

Department of Medicine, University of Alabama at Birmingham, Birmingham, AL, 35294, USA.

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http://dx.doi.org/10.1186/s12900-015-0037-1DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4450493PMC
June 2015

An ancient protein-DNA interaction underlying metazoan sex determination.

Nat Struct Mol Biol 2015 Jun 25;22(6):442-51. Epub 2015 May 25.

1] Department of Genetics, Cell Biology, and Development, University of Minnesota, Minneapolis, Minnesota, USA. [2] Masonic Cancer Center, University of Minnesota, Minneapolis, Minnesota, USA. [3] Developmental Biology Center, University of Minnesota, Minneapolis, Minnesota, USA.

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http://dx.doi.org/10.1038/nsmb.3032DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4476070PMC
June 2015

Structural Basis for Error-Free Bypass of the 5-N-Methylformamidopyrimidine-dG Lesion by Human DNA Polymerase η and Sulfolobus solfataricus P2 Polymerase IV.

J Am Chem Soc 2015 Jun 27;137(22):7011-4. Epub 2015 May 27.

†Department of Biochemistry, Center in Molecular Toxicology, Vanderbilt-Ingram Cancer Center, Vanderbilt Institute of Chemical Biology, Center for Structural Biology, Vanderbilt University School of Medicine, Nashville, Tennessee 37232, United States.

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http://dx.doi.org/10.1021/jacs.5b02701DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4545269PMC
June 2015

Action at a distance: mutations of peripheral residues transform rapid reversible inhibitors to slow, tight binders of cyclooxygenase-2.

J Biol Chem 2015 May 30;290(20):12793-803. Epub 2015 Mar 30.

From the A. B. Hancock, Jr. Memorial Laboratory for Cancer Research, Departments of Biochemistry, Chemistry, and Pharmacology, Vanderbilt Institute of Chemical Biology, Center in Molecular Toxicology, Vanderbilt-Ingram Cancer Center, Vanderbilt University School of Medicine, Nashville Tennessee 37232,

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http://dx.doi.org/10.1074/jbc.M114.635987DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4432295PMC
May 2015

13-Methylarachidonic acid is a positive allosteric modulator of endocannabinoid oxygenation by cyclooxygenase.

J Biol Chem 2015 Mar 2;290(12):7897-909. Epub 2015 Feb 2.

From the A. B. Hancock Jr. Memorial Laboratory for Cancer Research, Departments of Biochemistry, Vanderbilt Institute of Chemical Biology, Chemistry, and Pharmacology, Vanderbilt Center in Molecular Toxicology, Vanderbilt-Ingram Cancer Center, and Vanderbilt University School of Medicine, Nashville, Tennessee 37232-0146,

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http://dx.doi.org/10.1074/jbc.M114.634014DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4367288PMC
March 2015

Differential stabilities and sequence-dependent base pair opening dynamics of Watson-Crick base pairs with 5-hydroxymethylcytosine, 5-formylcytosine, or 5-carboxylcytosine.

Biochemistry 2015 Feb 29;54(5):1294-305. Epub 2015 Jan 29.

Department of Chemistry, Vanderbilt Institute of Chemical Biology, Vanderbilt Ingram Cancer Center, and Center for Structural Biology, Vanderbilt University , Nashville, Tennessee 37235, United States.

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http://dx.doi.org/10.1021/bi501534xDOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4325598PMC
February 2015

Structure of Streptococcus agalactiae glyceraldehyde-3-phosphate dehydrogenase holoenzyme reveals a novel surface.

Acta Crystallogr F Struct Biol Commun 2014 Oct 25;70(Pt 10):1333-9. Epub 2014 Sep 25.

Center for Biophysical Sciences and Engineering, University of Alabama at Birmingham, Birmingham, AL 35294, USA.

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http://dx.doi.org/10.1107/S2053230X14019517DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4188075PMC
October 2014

X-ray structures of GluCl in apo states reveal a gating mechanism of Cys-loop receptors.

Nature 2014 Aug;512(7514):333-7

1] Vollum Institute, Oregon Health &Science University, 3181 SW Sam Jackson Park Road, Portland, Oregon 97239, USA [2] Howard Hughes Medical Institute, Oregon Health &Science University, 3181 SW Sam Jackson Park Road, Portland, Oregon 97239, USA.

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http://dx.doi.org/10.1038/nature13669DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4255919PMC
August 2014

Oxicams bind in a novel mode to the cyclooxygenase active site via a two-water-mediated H-bonding Network.

J Biol Chem 2014 Mar 14;289(10):6799-808. Epub 2014 Jan 14.

From the A. B. Hancock Jr. Memorial Laboratory for Cancer Research, Departments of Biochemistry, Chemistry, and Pharmacology, Vanderbilt Institute of Chemical Biology, Center in Molecular Toxicology, Vanderbilt-Ingram Cancer Center, Vanderbilt University School of Medicine, Nashville, Tennessee 37232.

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http://www.jbc.org/lookup/doi/10.1074/jbc.M113.517987
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http://dx.doi.org/10.1074/jbc.M113.517987DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3945341PMC
March 2014

Exploring the molecular determinants of substrate-selective inhibition of cyclooxygenase-2 by lumiracoxib.

Bioorg Med Chem Lett 2013 Nov 6;23(21):5860-4. Epub 2013 Sep 6.

A.B. Hancock Jr. Memorial Laboratory for Cancer Research, Department of Biochemistry, Department of Chemistry, Department of Pharmacology, Vanderbilt Institute of Chemical Biology, Center in Molecular Toxicology, and Vanderbilt-Ingram Cancer Center, Vanderbilt University School of Medicine, Nashville, TN, United States.

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http://dx.doi.org/10.1016/j.bmcl.2013.08.097DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3857387PMC
November 2013

Ring-opening of the γ-OH-PdG adduct promotes error-free bypass by the Sulfolobus solfataricus DNA polymerase Dpo4.

Chem Res Toxicol 2013 Sep 16;26(9):1348-60. Epub 2013 Aug 16.

Department of Chemistry, Center in Molecular Toxicology, Vanderbilt-Ingram Cancer Center, Vanderbilt Institute of Chemical Biology, and Center for Structural Biology, Vanderbilt University , Nashville, Tennessee 37235, United States.

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http://dx.doi.org/10.1021/tx400200bDOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3775444PMC
September 2013

Leukotriene biosynthesis inhibitor MK886 impedes DNA polymerase activity.

Chem Res Toxicol 2013 Feb 31;26(2):221-32. Epub 2013 Jan 31.

Department of Biochemistry and Molecular Biology, University of Arkansas for Medical Sciences, Little Rock, AR 72205-7199, USA.

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http://dx.doi.org/10.1021/tx300392mDOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3578163PMC
February 2013

Differential furanose selection in the active sites of archaeal DNA polymerases probed by fixed-conformation nucleotide analogues.

Biochemistry 2012 Nov 30;51(45):9234-44. Epub 2012 Oct 30.

Department of Biochemistry and Molecular Biology, University of Arkansas for Medical Sciences, Little Rock, Arkansas 72205-7199, United States.

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http://dx.doi.org/10.1021/bi301043kDOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3563936PMC
November 2012

Substrate-Selective Inhibition of Cyclooxygenase-2: Development and Evaluation of Achiral Profen Probes.

ACS Med Chem Lett 2012 Sep 15;3(9):759-763. Epub 2012 Aug 15.

A.B. Hancock Jr. Memorial Laboratory for Cancer Research, Departments of Biochemistry, Chemistry, and Pharmacology, Vanderbilt Institute of Chemical Biology, Center in Molecular Toxicology, and Vanderbilt-Ingram Cancer Center, Vanderbilt University School of Medicine , Nashville, Tennessee, United States.

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http://dx.doi.org/10.1021/ml3001616DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3441040PMC
September 2012

A nucleotide-analogue-induced gain of function corrects the error-prone nature of human DNA polymerase iota.

J Am Chem Soc 2012 Jun 14;134(25):10698-705. Epub 2012 Jun 14.

Department of Biochemistry and Molecular Biology, University of Arkansas for Medical Sciences, Little Rock, Arkansas 72205-7199, USA.

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http://dx.doi.org/10.1021/ja304176qDOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3392044PMC
June 2012

Replication bypass of the trans-4-Hydroxynonenal-derived (6S,8R,11S)-1,N(2)-deoxyguanosine DNA adduct by the sulfolobus solfataricus DNA polymerase IV.

Chem Res Toxicol 2012 Feb 7;25(2):422-35. Epub 2012 Feb 7.

Departments of Chemistry and Biochemistry, Center in Molecular Toxicology, Vanderbilt Institute of Chemical Biology and the Vanderbilt-Ingram Cancer Center, Vanderbilt University , Nashville, Tennessee 37235, United States.

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http://dx.doi.org/10.1021/tx200460jDOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3285121PMC
February 2012

Three-dimensional structure of steroid 21-hydroxylase (cytochrome P450 21A2) with two substrates reveals locations of disease-associated variants.

J Biol Chem 2012 Mar 18;287(13):10613-22. Epub 2012 Jan 18.

Department of Biochemistry and Center in Molecular Toxicology, Vanderbilt University School of Medicine, Nashville, Tennessee 37232-0146, USA.

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http://dx.doi.org/10.1074/jbc.M111.323501DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3323056PMC
March 2012

Bypass of aflatoxin B1 adducts by the Sulfolobus solfataricus DNA polymerase IV.

J Am Chem Soc 2011 Aug 26;133(32):12556-68. Epub 2011 Jul 26.

Department of Chemistry, Center in Molecular Toxicology, Vanderbilt Institute of Chemical Biology, Vanderbilt University, Nashville, Tennessee 37235, United States.

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http://dx.doi.org/10.1021/ja2015668DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3154525PMC
August 2011

Selective Incision of the alpha-N-Methyl-Formamidopyrimidine Anomer by Escherichia coli Endonuclease IV.

J Nucleic Acids 2010 Jul 25;2010. Epub 2010 Jul 25.

Departments of Chemistry and Biochemistry, Center in Molecular Toxicology, Vanderbilt University, VU Station B 351822, Nashville, N 37235-1822, USA.

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http://dx.doi.org/10.4061/2010/850234DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2925382PMC
July 2010

Kinetics of a collagen-like polypeptide fragmentation after mid-IR free-electron laser ablation.

Biophys J 2008 Aug 25;95(3):1371-81. Epub 2008 Apr 25.

Department of Physics and Astronomy, Vanderbilt University, Nashville, Tennessee 37235, USA.

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http://dx.doi.org/10.1529/biophysj.107.122002DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2479591PMC
August 2008

Cation-dependent nuclearity of the copper-azido moiety: synthesis, structure, and magnetic study.

Inorg Chem 2005 Sep;44(18):6379-85

Department of Chemistry, Jadavpur University, Jadavpur, Calcutta 700 032, India.

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http://dx.doi.org/10.1021/ic050117uDOI Listing
September 2005