Publications by authors named "Sung Min Ha"

48Publications

Brain extraction on MRI scans in presence of diffuse glioma: Multi-institutional performance evaluation of deep learning methods and robust modality-agnostic training.

Neuroimage 2020 Oct 27;220:117081. Epub 2020 Jun 27.

Center for Biomedical Image Computing and Analytics (CBICA), University of Pennsylvania, Philadelphia, PA, USA; Department of Radiology, Perelman School of Medicine, University of Pennsylvania, Philadelphia, PA, USA; Department of Pathology and Laboratory Medicine, Perelman School of Medicine, University of Pennsylvania, Philadelphia, PA, USA. Electronic address:

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http://dx.doi.org/10.1016/j.neuroimage.2020.117081DOI Listing
October 2020

Skull-Stripping of Glioblastoma MRI Scans Using 3D Deep Learning.

Brainlesion 2019 Oct 19;11992:57-68. Epub 2020 May 19.

Center for Biomedical Image Computing and Analytics (CBICA), University of Pennsylvania, Philadelphia, PA, USA.

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http://dx.doi.org/10.1007/978-3-030-46640-4_6DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC7311100PMC
October 2019

Overall survival prediction in glioblastoma patients using structural magnetic resonance imaging (MRI): advanced radiomic features may compensate for lack of advanced MRI modalities.

J Med Imaging (Bellingham) 2020 May 9;7(3):031505. Epub 2020 Jun 9.

University of Pennsylvania, Perelman School of Medicine, Center for Biomedical Image Computing and Analytics, Richards Medical Research Laboratories, Philadelphia, PA, United States.

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http://dx.doi.org/10.1117/1.JMI.7.3.031505DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC7282509PMC
May 2020

Isolation of a novel species in the genus Cupriavidus from a patient with sepsis using whole genome sequencing.

PLoS One 2020 13;15(5):e0232850. Epub 2020 May 13.

Department of Laboratory Medicine, Chung-Ang University College of Medicine, Seoul, Republic of Korea.

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http://journals.plos.org/plosone/article?id=10.1371/journal.pone.0232850PLOS
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC7219751PMC
July 2020

Genome-based reclassification of Aguilera . 2001 as a later heterotypic synonym of (Prazmowski 1880) Ash . 1994.

Int J Syst Evol Microbiol 2020 May;70(5):3134-3138

​School of Biological Sciences & Inst. of Molecular Biology and Genetics, Seoul National University, Seoul 151-742, Republic of Korea.

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http://dx.doi.org/10.1099/ijsem.0.004140DOI Listing
May 2020

The Image Biomarker Standardization Initiative: Standardized Quantitative Radiomics for High-Throughput Image-based Phenotyping.

Radiology 2020 05 10;295(2):328-338. Epub 2020 Mar 10.

From OncoRay-National Center for Radiation Research in Oncology, Faculty of Medicine and University Hospital Carl Gustav Carus, Technische Universität Dresden, Helmholtz-Zentrum Dresden-Rossendorf, Fetscherstr 74, PF 41, 01307 Dresden, Germany (A.Z., S. Leger, E.G.C.T., C.R., S. Löck); National Center for Tumor Diseases (NCT), Partner Site Dresden, Germany: German Cancer Research Center (DKFZ), Heidelberg, Germany (A.Z.); Faculty of Medicine and University Hospital Carl Gustav Carus, Technische Universität Dresden and Helmholtz Association/Helmholtz-Zentrum Dresden-Rossendorf (HZDR), Dresden, Germany (A.Z., S. Leger, E.G.C.T.); German Cancer Consortium (DKTK), Partner Site Dresden, and German Cancer Research Center (DKFZ), Heidelberg, Germany (A.Z., S. Leger, E.G.C.T., C.R., S. Löck); Medical Physics Unit, McGill University, Montréal, Canada (M.V., I.E.N.); Image Response Assessment Team Core Facility, Moffitt Cancer Center, Tampa, Fla (M.A.A.); Dana-Farber Cancer Institute, Brigham and Women's Hospital, and Harvard Medical School, Harvard University, Boston, Mass (H.J.W.L.A.); Institute of Information Systems, University of Applied Sciences Western Switzerland (HES-SO), Sierre, Switzerland (V.A., A.D., H.M.); Department of Medical Physics, Memorial Sloan Kettering Cancer Center, New York, NY (A.A.); Department of Electrical and Computer Engineering, Johns Hopkins University, Baltimore, Md (S.A.); Department of Radiology and Radiological Science, Johns Hopkins University, Baltimore, Md (S.A., A.R.); Center for Biomedical image Computing and Analytics (CBICA), University of Pennsylvania, Philadelphia, Pa (S.B., C.D., S.M.H., S.P.); Department of Radiology, Perelman School of Medicine, University of Pennsylvania, Philadelphia, Pa (S.B., C.D., S.M.H., S.P.); Department of Pathology and Laboratory Medicine, Perelman School of Medicine, University of Pennsylvania, Philadelphia, Pa (S.B.); Department of Nuclear Medicine and Molecular Imaging, University of Groningen, University Medical Center Groningen (UMCG), Groningen, the Netherlands (R.J.B., R.B., E.A.G.P.); Radiology and Nuclear Medicine, VU University Medical Centre (VUMC), Amsterdam, the Netherlands (R.B.); Department of Radiation Oncology, University Hospital Zurich, University of Zurich, Zurich, Switzerland (M.B., M.Guckenberger, S.T.L.); Fondazione Policlinico Universitario "A. Gemelli" IRCCS, Rome, Italy (L.B., N.D., R.G., J.L., V.V.); Laboratoire d'Imagerie Translationnelle en Oncologie, Université Paris Saclay, Inserm, Institut Curie, Orsay, France (I.B., C.N., F.O.); Cancer Imaging Dept, School of Biomedical Engineering and Imaging Sciences, King's College London, London, United Kingdom (G.J.R.C., V.G., M.M.S.); Department of Nuclear Medicine and Molecular Imaging, Lausanne University Hospital, Lausanne, Switzerland (A.D.); Laboratory of Medical Information Processing (LaTIM)-team ACTION (image-guided therapeutic action in oncology), INSERM, UMR 1101, IBSAM, UBO, UBL, Brest, France (M.C.D., M.H., T.U.); Department of Radiation Oncology, the Netherlands Cancer Institute (NKI), Amsterdam, the Netherlands (C.V.D.); Department of Radiology, Stanford University School of Medicine, Stanford, Calif (S.E., S.N.); Department of Radiation Oncology, Physics Division, University of Michigan, Ann Arbor, Mich (I.E.N., A.U.K.R.); Surgical Planning Laboratory, Brigham and Women's Hospital and Harvard Medical School, Harvard University, Boston, Mass (A.Y.F.); Department of Cancer Imaging and Metabolism, Moffitt Cancer Center, Tampa, Fla (R.J.G.); Department of Medical Image Computing, German Cancer Research Center (DKFZ), Heidelberg, Germany (M. Götz, F.I., K.H.M.H., J.S.); The D-Lab, Department of Precision Medicine, GROW-School for Oncology and Developmental Biology, Maastricht University Medical Centre+, Maastricht, the Netherlands (P.L., R.T.H.L.); Section for Biomedical Physics, Department of Radiation Oncology, University of Tübingen, Germany (F.L., J.S.F., D.T.); Department of Clinical Medicine, University of Bergen, Bergen, Norway (A.L.); Department of Radiation Oncology, University of California, San Francisco, Calif (O.M.); University of Geneva, Geneva, Switzerland (H.M.); Department of Electrical Engineering, Stanford University, Stanford, Calif (S.N.); Department of Medicine (Biomedical Informatics Research), Stanford University School of Medicine, Stanford, Calif (S.N.); Departments of Radiology and Physics, University of British Columbia, Vancouver, Canada (A.R.); Department of Computational Medicine and Bioinformatics, University of Michigan, Ann Arbor, Mich (A.U.K.R.); Department of Radiation Oncology, University of Groningen, University Medical Center Groningen (UMCG), Groningen, the Netherlands (N.M.S., R.J.H.M.S., L.V.v.D.); School of Engineering, Cardiff University, Cardiff, United Kingdom (E.S., P.W.); Department of Medical Physics, Velindre Cancer Centre, Cardiff, United Kingdom (E.S.); Department of Radiotherapy and Radiation Oncology, Faculty of Medicine and University Hospital Carl Gustav Carus, Technische Universität Dresden, Dresden, Germany (E.G.C.T., C.R., S. Löck), Helmholtz-Zentrum Dresden-Rossendorf, Institute of Radiooncology-OncoRay, Dresden, Germany (E.G.C.T., C.R.); Department of Nuclear Medicine, CHU Milétrie, Poitiers, France (T.U.); Department of Radiology, the Netherlands Cancer Institute (NKI), Amsterdam, the Netherlands (J.v.G.); GROW-School for Oncology and Developmental Biology, Maastricht University Medical Center, Maastricht, the Netherlands (J.v.G.); Department of Radiation Oncology, Dana-Farber Cancer Institute, Brigham and Women's Hospital, Harvard Medical School, Boston, Mass (J.v.G.); and Department of Radiology, Leiden University Medical Center (LUMC), Leiden, the Netherlands (F.H.P.v.V.).

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http://dx.doi.org/10.1148/radiol.2020191145DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC7193906PMC
May 2020

Comparison of the electromyographic recruitment of the posterior oblique sling muscles during prone hip extension among three different shoulder positions.

Physiother Theory Pract 2019 Oct 13:1-8. Epub 2019 Oct 13.

Department of Physical Therapy, College of Life & Health Sciences, Hoseo University , Asan-si , Chungcheongnam-do , Korea.

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http://dx.doi.org/10.1080/09593985.2019.1675206DOI Listing
October 2019

Epidermal Growth Factor Receptor Extracellular Domain Mutations in Glioblastoma Present Opportunities for Clinical Imaging and Therapeutic Development.

Cancer Cell 2018 07;34(1):163-177.e7

Department of Neurosurgery, Perelman School of Medicine, University of Pennsylvania, Philadelphia, PA 19104, USA; Center for Biomedical Image Computing and Analytics, Perelman School of Medicine, University of Pennsylvania, Philadelphia, PA 19104, USA; Abramson Cancer Center, University of Pennsylvania, Philadelphia, PA 19104, USA. Electronic address:

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http://dx.doi.org/10.1016/j.ccell.2018.06.006DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6424337PMC
July 2018

Multivalent Binding of a Ligand-Coated Particle: Role of Shape, Size, and Ligand Heterogeneity.

Biophys J 2018 04;114(8):1830-1846

Department of Bioengineering, University of Pennsylvania, Philadelphia, Pennsylvania. Electronic address:

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https://linkinghub.elsevier.com/retrieve/pii/S00063495183033
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http://dx.doi.org/10.1016/j.bpj.2018.03.007DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5937168PMC
April 2018

UBCG: Up-to-date bacterial core gene set and pipeline for phylogenomic tree reconstruction.

J Microbiol 2018 Apr 28;56(4):280-285. Epub 2018 Feb 28.

Interdisciplinary Program in Bioinformatics, Seoul National University, Seoul, 00826, Republic of Korea.

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http://dx.doi.org/10.1007/s12275-018-8014-6DOI Listing
April 2018

Predictors of upper trapezius pain with myofascial trigger points in food service workers: The STROBE study.

Medicine (Baltimore) 2017 Jun;96(26):e7252

aDepartment of Physical Therapy, Graduate School, Yonsei University bDepartment of Physical Therapy, College of Health Science, Laboratory of Kinetic Ergocise Based on Movement Analysis, Yonsei University, Wonju cDepartment of Physical Therapy, Joongbu University, Chubu-myeon, Geumsan-gun, Chungcheongnam-do dDepartment of Physical Therapy, College of Health Science, Sangji University, Wonju, South Korea.

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http://dx.doi.org/10.1097/MD.0000000000007252DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5500039PMC
June 2017

ContEst16S: an algorithm that identifies contaminated prokaryotic genomes using 16S RNA gene sequences.

Int J Syst Evol Microbiol 2017 Jun 22;67(6):2053-2057. Epub 2017 Jun 22.

ChunLab, Inc., Seoul National University, Seoul 151-742, Republic of Korea.

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http://dx.doi.org/10.1099/ijsem.0.001872DOI Listing
June 2017

A large-scale evaluation of algorithms to calculate average nucleotide identity.

Antonie Van Leeuwenhoek 2017 Oct 15;110(10):1281-1286. Epub 2017 Feb 15.

School of Biological Sciences & Institute of Molecular Biology & Genetics, Seoul National University, Seoul, 151-742, Republic of Korea.

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http://dx.doi.org/10.1007/s10482-017-0844-4DOI Listing
October 2017

Introducing EzBioCloud: a taxonomically united database of 16S rRNA gene sequences and whole-genome assemblies.

Int J Syst Evol Microbiol 2017 May 30;67(5):1613-1617. Epub 2017 May 30.

Department of ChunLab, Inc, Seoul National University, Seoul, Republic of Korea.

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http://dx.doi.org/10.1099/ijsem.0.001755DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5563544PMC
May 2017

Thermally conductive polyamide 6/carbon filler composites based on a hybrid filler system.

Sci Technol Adv Mater 2015 Dec 5;16(6):065001. Epub 2015 Nov 5.

Division of Advanced Materials, Korea Research Institute of Chemical Technology, Daejeon 34114, Korea; Department of Chemical Convergence Materials and Nanomaterials Science and Engineering, University of Science and Technology, Daejeon 34113, Korea.

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http://dx.doi.org/10.1088/1468-6996/16/6/065001DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5069987PMC
December 2015

Ultrasound Guided Low Approach Interscalene Brachial Plexus Block for Upper Limb Surgery.

Korean J Pain 2016 Jan 4;29(1):18-22. Epub 2016 Jan 4.

Department of Anesthesiology and Pain Medicine, Jeju National University Hospital, Jeju, Korea.

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http://dx.doi.org/10.3344/kjp.2016.29.1.18DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4731546PMC
January 2016

Effects of scapular upward rotation exercises on alignment of scapula and clavicle and strength of scapular upward rotators in subjects with scapular downward rotation syndrome.

J Electromyogr Kinesiol 2016 Feb 22;26:130-6. Epub 2015 Dec 22.

Department of Physical Therapy, College of Rehabilitation Science, Daegu University, Gyeongsan, South Korea.

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http://dx.doi.org/10.1016/j.jelekin.2015.12.007DOI Listing
February 2016

Reliability of ultrasonography measurement for the longus colli according to inward probe pressure.

J Phys Ther Sci 2015 Nov 30;27(11):3579-81. Epub 2015 Nov 30.

Department of Occupational Therapy, Kaya University, Republic of Korea.

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http://dx.doi.org/10.1589/jpts.27.3579DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4681948PMC
November 2015

Metagenomic insights into the bioaerosols in the indoor and outdoor environments of childcare facilities.

PLoS One 2015 28;10(5):e0126960. Epub 2015 May 28.

BK21PLUS Program in Embodiment: Health-Society Interaction, Department of Public Health Sciences, Graduate School, Korea University, Seoul, Republic of Korea; School of Biosystem and Biomedical Science, Korea University, Seoul, Republic of Korea.

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http://journals.plos.org/plosone/article?id=10.1371/journal.pone.0126960PLOS
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4447338PMC
April 2016

Caffeic acid phenethyl ester lessens disease symptoms in an experimental autoimmune uveoretinitis mouse model.

Exp Eye Res 2015 May 17;134:53-62. Epub 2015 Mar 17.

Department of Microbiology and Immunology, College of Medicine, Inje University, Busan, Republic of Korea; Ocular Neovascular Disease Research Center, Busan Paik Hospital, Busan, Republic of Korea. Electronic address:

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http://dx.doi.org/10.1016/j.exer.2015.03.014DOI Listing
May 2015

Reliability of the modified Thomas test using a lumbo-plevic stabilization.

J Phys Ther Sci 2015 Feb 17;27(2):447-9. Epub 2015 Feb 17.

Department of Physical Therapy, College of Health Science, Sangji University, Republic of Korea.

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http://dx.doi.org/10.1589/jpts.27.447DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4339157PMC
February 2015

Thermal conductivity improvement of surface-enhanced polyetherimide (PEI) composites using polyimide-coated h-BN particles.

Phys Chem Chem Phys 2014 Oct;16(37):20041-6

Advanced Functional Materials Research Group, Korea Research Institute of Chemical Technology, Daejeon 305-600, Republic of Korea.

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http://dx.doi.org/10.1039/c4cp02730bDOI Listing
October 2014

The effects of surface condition on abdominal muscle activity during single-legged hold exercise.

J Electromyogr Kinesiol 2015 Feb 9;25(1):28-33. Epub 2014 Jul 9.

Department of Physical Therapy, College of Health Science, Laboratory of Kinetic Ergocise Based on Movement Analysis, Yonsei University, Wonju, Republic of Korea. Electronic address:

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http://dx.doi.org/10.1016/j.jelekin.2014.07.001DOI Listing
February 2015

The Influence of Dual Pressure Biofeedback Units on Pelvic Rotation and Abdominal Muscle Activity during the Active Straight Leg Raise in Women with Chronic Lower Back Pain.

J Phys Ther Sci 2014 May 29;26(5):717-9. Epub 2014 May 29.

Department of Physical Therapy, College of Biomedical Science and Engineering, Inje University: 607 Obang-dong, Gimhae-si, Gyeongsangnam-do 621-749, Republic of Korea.

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http://dx.doi.org/10.1589/jpts.26.717DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4047238PMC
May 2014

Correlation of the Y-Balance Test with Lower-limb Strength of Adult Women.

J Phys Ther Sci 2014 May 29;26(5):641-3. Epub 2014 May 29.

Department of Physical Therapy, College of Biomedical Science and Engineering, Inje University, Republic of Korea.

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http://dx.doi.org/10.1589/jpts.26.641DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4047222PMC
May 2014

EzEditor: a versatile sequence alignment editor for both rRNA- and protein-coding genes.

Int J Syst Evol Microbiol 2014 Feb 18;64(Pt 2):689-691. Epub 2013 Dec 18.

School of Biological Sciences, Seoul National University, Seoul, Republic of Korea.

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http://dx.doi.org/10.1099/ijs.0.059360-0DOI Listing
February 2014

Comparison of Posterior Oblique Sling Activity during Hip Extension in the Prone Position on the Floor and on a Round Foam Roll.

J Phys Ther Sci 2013 Aug 20;25(8):977-9. Epub 2013 Sep 20.

Department of Rehabilitation Science, Graduate School, Inje University.

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http://dx.doi.org/10.1589/jpts.25.977DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3820237PMC
August 2013

Lumbopelvic motion during seated hip flexion in subjects with low-back pain accompanying limited hip flexion.

Eur Spine J 2014 Jan 30;23(1):142-8. Epub 2013 Aug 30.

Department of Physical Therapy, The Graduate School, Yonsei University, Wonju, Republic of Korea.

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http://dx.doi.org/10.1007/s00586-013-2973-4DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3897836PMC
January 2014

The importance of a normal breathing pattern for an effective abdominal-hollowing maneuver in healthy people: an experimental study.

J Sport Rehabil 2014 Feb 12;23(1):12-7. Epub 2013 Aug 12.

Dept of Physical Therapy, Baekseok University, Republic of Korea.

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http://dx.doi.org/10.1123/jsr.2012-0059DOI Listing
February 2014

A reliability of electromyographic normalization methods for the infraspinatus muscle in healthy subjects.

J Hum Kinet 2013 Mar 28;36:69-76. Epub 2013 Mar 28.

Department of Physical Therapy, Division of Health Science, Baekseok University, Cheon-an, Republic of Korea.

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http://dx.doi.org/10.2478/hukin-2013-0007DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3661896PMC
March 2013

Selective activation of the infraspinatus muscle.

J Athl Train 2013 May-Jun;48(3):346-52. Epub 2013 Feb 20.

Department of Physical Therapy, Division of Health Science, Baekseok University, Republic of Korea.

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http://dx.doi.org/10.4085/1062-6050-48.2.18DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3655748PMC
October 2013

Reliability and validity of goniometric and photographic measurements of clavicular tilt angle.

Man Ther 2013 Oct 29;18(5):367-71. Epub 2013 Jan 29.

Department of Physical Therapy, Baekseok University, Division of Health Science, Republic of Korea.

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https://linkinghub.elsevier.com/retrieve/pii/S1356689X120027
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http://dx.doi.org/10.1016/j.math.2012.12.006DOI Listing
October 2013

Comparison of electromyographic activity and range of neck motion in violin students with and without neck pain during playing.

Med Probl Perform Art 2012 Dec;27(4):188-92

Department of Physical Therapy, Yonsei University, Kangwon-do, South Korea.

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December 2012

Effects of the pelvic rotatory control method on abdominal muscle activity and the pelvic rotation during active straight leg raising.

Man Ther 2013 Jun 3;18(3):220-4. Epub 2012 Nov 3.

Department of Rehabilitation Therapy, Graduate School, Inje University, Gimhae, Republic of Korea.

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http://dx.doi.org/10.1016/j.math.2012.10.004DOI Listing
June 2013

Comparison of electromyographic activity of the lower trapezius and serratus anterior muscle in different arm-lifting scapular posterior tilt exercises.

Phys Ther Sport 2012 Nov 30;13(4):227-32. Epub 2012 Jan 30.

Department of Rehabilitation Therapy, Graduate School of Yonsei University, Wonju, Republic of Korea.

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http://dx.doi.org/10.1016/j.ptsp.2011.11.002DOI Listing
November 2012

Effects of the abdominal drawing-in maneuver on muscle activity, pelvic motions, and knee flexion during active prone knee flexion in patients with lumbar extension rotation syndrome.

Arch Phys Med Rehabil 2011 Sep 29;92(9):1477-83. Epub 2011 Jul 29.

Department of Rehabilitation Therapy, Graduate School, Yonsei University, Wonju, South Korea.

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http://dx.doi.org/10.1016/j.apmr.2011.03.020DOI Listing
September 2011

Effects of passive correction of scapular position on pain, proprioception, and range of motion in neck-pain patients with bilateral scapular downward-rotation syndrome.

Man Ther 2011 Dec 25;16(6):585-9. Epub 2011 Jun 25.

Department of Rehabilitation Therapy, Graduate School, Yonsei University, Wonju, Republic of Korea.

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http://dx.doi.org/10.1016/j.math.2011.05.011DOI Listing
December 2011

A convenient route to diverse heterocycles through an addition of beta-amino carbonyl compounds to 3-halogeno-4-methoxybenzynes.

J Org Chem 2005 Jul;70(14):5741-4

School of Chemistry and Molecular Engineering, Seoul National University, Seoul 151-742, Korea.

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http://dx.doi.org/10.1021/jo050420cDOI Listing
July 2005