Publications by authors named "Sunetra Gupta"

78Publications

Leveraging epidemiological principles to evaluate Sweden's COVID-19 response.

Ann Epidemiol 2021 02 23;54:21-26. Epub 2020 Nov 23.

Division of Pharmacoepidemiology and Pharmacoeconomics, Department of Medicine, Harvard Medical School, Boston, MA.

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February 2021

Estimating the burden of α-thalassaemia in Thailand using a comprehensive prevalence database for Southeast Asia.

Elife 2019 05 23;8. Epub 2019 May 23.

MRC-PHE Centre for Environment and Health, Department of Epidemiology and Biostatistics, School of Public Health, Imperial College London, London, United Kingdom.

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May 2019

The spatial epidemiology of sickle-cell anaemia in India.

Sci Rep 2018 12 6;8(1):17685. Epub 2018 Dec 6.

Evolutionary Ecology of Infectious Disease Group, Peter Medawar Building for Pathogen Research, Department of Zoology, University of Oxford, Oxford, UK.

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December 2018

Challenges in dengue research: A computational perspective.

Evol Appl 2018 04 5;11(4):516-533. Epub 2017 Nov 5.

Centre for Mathematics and the Environment University of Exeter Penryn UK.

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April 2018

Vaccination can drive an increase in frequencies of antibiotic resistance among nonvaccine serotypes of .

Proc Natl Acad Sci U S A 2018 03 6;115(12):3102-3107. Epub 2018 Mar 6.

Department of Zoology, University of Oxford, Oxford OX2 6GG, United Kingdom.

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March 2018

Quantifying the contribution of malaria to febrile illness amongst African children.

Elife 2017 10 16;6. Epub 2017 Oct 16.

Big Data Institute, Li Ka Shing Centre for Health Information and Discovery, University of Oxford, Oxford, United Kingdom.

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October 2017

Competing species leave many potential niches unfilled.

Nat Ecol Evol 2017 Oct 18;1(10):1495-1501. Epub 2017 Sep 18.

Department of Zoology, University of Oxford, Oxford, OX1 3PS, UK.

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October 2017

Detecting signatures of past pathogen selection on human HLA loci: are there needles in the haystack?

Parasitology 2018 05 15;145(6):731-739. Epub 2017 Aug 15.

Department of Zoology,University of Oxford,Oxford, OX1 3PS,UK.

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May 2018

How has publishing changed in the last twenty years?

Authors:
Sunetra Gupta

Notes Rec R Soc Lond 2016 Dec;70(4):391-2

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December 2016

Reducing HIV infection in people who inject drugs is impossible without targeting recently-infected subjects.

AIDS 2016 11;30(18):2885-2890

aDepartment of Zoology, University of Oxford, Oxford, United Kingdom bNational Development and Research Institutes, Inc, New York, New York, USA cDepartment of Hygiene, Epidemiology, and Medical Statistics, Athens University Medical School, Athens, Greece dInternational HIV/AIDS Alliance in Ukraine, Kyiv, Ukraine.

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November 2016

Metabolic competition as a driver of bacterial population structure.

Future Microbiol 2016 10 23;11:1339-1357. Epub 2016 Sep 23.

Department of Zoology, University of Oxford, South Parks Road, Oxford, OX1 3PS, UK.

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October 2016

Reproduction, infection and killer-cell immunoglobulin-like receptor haplotype evolution.

Immunogenetics 2016 Nov 12;68(10):755-764. Epub 2016 Aug 12.

Department of Structural Biology, Stanford University, Stanford, CA, 94035, USA.

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November 2016

Sickle haemoglobin, haemoglobin C and malaria mortality feedbacks.

Malar J 2016 Jan 12;15:26. Epub 2016 Jan 12.

Department of Zoology, University of Oxford, South Parks Road, Oxford, OX1 3PS, UK.

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January 2016

Observed and expected frequencies of structural hemoglobin variants in newborn screening surveys in Africa and the Middle East: deviations from Hardy-Weinberg equilibrium.

Genet Med 2016 Mar 3;18(3):265-74. Epub 2015 Dec 3.

National Center on Birth Defects and Developmental Disabilities, Centers for Disease Control and Prevention, Atlanta, Georgia, USA.

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March 2016

Understanding the contrasting spatial haplotype patterns of malaria-protective β-globin polymorphisms.

Infect Genet Evol 2015 Dec 21;36:174-183. Epub 2015 Sep 21.

Department of Zoology, University of Oxford, Oxford, UK. Electronic address:

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December 2015

Vaccination Drives Changes in Metabolic and Virulence Profiles of Streptococcus pneumoniae.

PLoS Pathog 2015 Jul 16;11(7):e1005034. Epub 2015 Jul 16.

Department of Zoology, University of Oxford, Oxford, United Kingdom.

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July 2015

Effects of neutralizing antibodies on escape from CD8+ T-cell responses in HIV-1 infection.

Philos Trans R Soc Lond B Biol Sci 2015 Aug;370(1675)

Department of Zoology, University of Oxford, Oxford OX1 3PS, UK

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August 2015

MANTIS: an R package that simulates multilocus models of pathogen evolution.

BMC Bioinformatics 2015 May 28;16:176. Epub 2015 May 28.

Department of Zoology, University of Oxford, South Parks Road, Oxford, UK.

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May 2015

Modelling challenges in context: lessons from malaria, HIV, and tuberculosis.

Epidemics 2015 Mar 16;10:102-7. Epub 2015 Feb 16.

Center for Communicable Disease Dynamics, Harvard T.H. Chan School of Public Health, Boston, MA 02115, United States; Department of Epidemiology, Harvard T.H. Chan School of Public Health, Boston, MA 02115, United States. Electronic address:

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March 2015

Five challenges in modelling interacting strain dynamics.

Epidemics 2015 Mar 7;10:31-4. Epub 2014 Oct 7.

Department of Applied Mathematics and Theoretical Physics, University of Cambridge, Cambridge CB3 0WA, United Kingdom; Fogarty International Center, National Institutes of Health, Bethesda, MD 20892, USA. Electronic address:

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March 2015

Mastering malaria: what helps and what hurts.

Authors:
Sunetra Gupta

Proc Natl Acad Sci U S A 2015 Mar;112(10):2925-6

Department of Zoology, University of Oxford, Oxford OX1 3PS, United Kingdom

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March 2015

Some considerations concerning the challenge of incorporating social variables into epidemiological models of infectious disease transmission.

Glob Public Health 2015 4;10(4):438-48. Epub 2015 Feb 4.

a Department of Global Health and Development , London School of Hygiene and Tropical Medicine , London , UK.

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December 2015

Epistasis and the sensitivity of phenotypic screens for beta thalassaemia.

Br J Haematol 2015 Apr 17;169(1):117-28. Epub 2014 Dec 17.

Department of Zoology, University of Oxford, Oxford, UK.

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April 2015

Contrasting within- and between-host immune selection shapes Neisseria Opa repertoires.

Sci Rep 2014 Oct 9;4:6554. Epub 2014 Oct 9.

1] Center for Communicable Disease Dynamics, Harvard School of Public Health, Boston, MA 02115 [2] Department of Epidemiology, Harvard School of Public Health, Boston, MA 02115.

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October 2014

Larger mammalian body size leads to lower retroviral activity.

PLoS Pathog 2014 Jul 17;10(7):e1004214. Epub 2014 Jul 17.

MRC-University of Glasgow Centre for Virus Research, Glasgow, United Kingdom.

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July 2014

Contact between bird species of different lifespans can promote the emergence of highly pathogenic avian influenza strains.

Proc Natl Acad Sci U S A 2014 Jul 23;111(29):10767-72. Epub 2014 Jun 23.

Department of Zoology, University of Oxford, Oxford OX1 3PS, United Kingdom; and

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July 2014

Effects of epistasis on infectivity range during host-parasite coevolution.

Evolution 2014 Oct 25;68(10):2972-82. Epub 2014 Jul 25.

Department of Zoology, University of Oxford, South Parks Road, Oxford, OX1 3PS, United Kingdom.

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October 2014

Parasitic castration promotes coevolutionary cycling but also imposes a cost on sex.

Evolution 2014 Aug 22;68(8):2234-44. Epub 2014 May 22.

Department of Zoology, University of Oxford, Oxford, OX1 3PS, United Kingdom.

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August 2014

Spatial structure mitigates fitness costs in host-parasite coevolution.

Am Nat 2014 Mar 15;183(3):E64-74. Epub 2014 Jan 15.

Department of Zoology, University of Oxford, South Parks Road, Oxford OX1 3PS, United Kingdom.

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March 2014

Pathogen selection drives nonoverlapping associations between HLA loci.

Proc Natl Acad Sci U S A 2013 Nov 13;110(48):19645-50. Epub 2013 Nov 13.

Department of Zoology, University of Oxford, Oxford OX1 3PS, United Kingdom.

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November 2013

Global burden of sickle cell anaemia in children under five, 2010-2050: modelling based on demographics, excess mortality, and interventions.

PLoS Med 2013 16;10(7):e1001484. Epub 2013 Jul 16.

Evolutionary Ecology of Infectious Disease, Department of Zoology, University of Oxford, Oxford, United Kingdom.

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February 2014

The antigenic evolution of influenza: drift or thrift?

Philos Trans R Soc Lond B Biol Sci 2013 Mar 4;368(1614):20120200. Epub 2013 Feb 4.

Department of Zoology, University of Oxford, Oxford OX1 3PS, UK.

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March 2013

Sexually transmitted infections in polygamous mating systems.

Philos Trans R Soc Lond B Biol Sci 2013 Mar 21;368(1613):20120048. Epub 2013 Jan 21.

Department of Zoology, University of Oxford, Oxford OX1 3PS, UK.

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March 2013

The roles of competition and mutation in shaping antigenic and genetic diversity in influenza.

PLoS Pathog 2013 Jan 3;9(1):e1003104. Epub 2013 Jan 3.

University of Michigan, Department of Computational Medicine and Bioinformatics, Department of Ecology and Evolutionary Biology, Ann Arbor, MI, USA.

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January 2013

The emergence and maintenance of sickle cell hotspots in the Mediterranean.

Infect Genet Evol 2012 Oct 13;12(7):1543-50. Epub 2012 Jun 13.

Department of Zoology, University of Oxford, Oxford OX1 3PS, UK.

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October 2012

Negative epistasis between α+ thalassaemia and sickle cell trait can explain interpopulation variation in South Asia.

Evolution 2011 Dec 11;65(12):3625-32. Epub 2011 Aug 11.

Department of Zoology, University of Oxford, South Parks Road Oxford, OX1 3PS, United Kingdom.

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December 2011

Role of stochastic processes in maintaining discrete strain structure in antigenically diverse pathogen populations.

Proc Natl Acad Sci U S A 2011 Sep 29;108(37):15504-9. Epub 2011 Aug 29.

Department of Epidemiology, Harvard School of Public Health, Center for Communicable Disease Dynamics, Boston, MA 02115, USA.

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September 2011

The effects of tertiary and quaternary infections on the epidemiology of dengue.

PLoS One 2010 Aug 23;5(8):e12347. Epub 2010 Aug 23.

Department of Zoology, University of Oxford, Oxford, United Kingdom.

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August 2010

Genome-wide association studies in Plasmodium species.

BMC Biol 2010 Jul 13;8:90. Epub 2010 Jul 13.

Department of Zoology, University of Oxford, Oxford OX1 3PS, UK.

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July 2010

Modelling malaria population structure and its implications for control.

Adv Exp Med Biol 2010 ;673:112-26

Department of Zoology, University of Oxford, South Parks Road, Oxford, UK, OX1 3PS.

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August 2010

Long-term evolution of antigen repertoires among carried meningococci.

Proc Biol Sci 2010 Jun 3;277(1688):1635-41. Epub 2010 Feb 3.

Department of Zoology, University of Oxford, Oxford OX1 3PS, UK.

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June 2010

Epistatic interactions between genetic disorders of hemoglobin can explain why the sickle-cell gene is uncommon in the Mediterranean.

Proc Natl Acad Sci U S A 2009 Dec 1;106(50):21242-6. Epub 2009 Dec 1.

Department of Zoology, University of Oxford, South Parks Road, Oxford OX1 3PS, United Kingdom.

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December 2009

Assessing the burden of pregnancy-associated malaria under changing transmission settings.

Malar J 2009 Oct 28;8:245. Epub 2009 Oct 28.

Department of Zoology, University of Oxford, Oxford OX1 3PS, UK.

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October 2009

Influenza outbreaks.

Cell Microbiol 2009 Jul 6;11(7):1016-24. Epub 2009 Apr 6.

Department of Zoology, University of Oxford, UK.

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July 2009

Immunological serotype interactions and their effect on the epidemiological pattern of dengue.

Proc Biol Sci 2009 Jul 15;276(1667):2541-8. Epub 2009 Apr 15.

Department of Zoology, University of Oxford, Oxford OX1 3PS, UK.

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July 2009

Inferring malaria parasite population structure from serological networks.

Proc Biol Sci 2009 Feb;276(1656):477-85

Department of Zoology, University of Oxford, Tinbergen Building, South Parks Road, Oxford OX1 3PS, UK.

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February 2009

Role of selection in the emergence of lineages and the evolution of virulence in Neisseria meningitidis.

Proc Natl Acad Sci U S A 2008 Sep 24;105(39):15082-7. Epub 2008 Sep 24.

Department of Zoology, University of Oxford, South Parks Road, Oxford OX1 3PS, United Kingdom.

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September 2008

Evolution of virulence in malaria.

J Biol 2008 Aug 28;7(6):22. Epub 2008 Aug 28.

Department of Zoology, University of Oxford, Oxford, OX1 3PS, UK.

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August 2008

Stability and bifurcations in a model of antigenic variation in malaria.

J Math Biol 2009 Jun 31;58(6):923-37. Epub 2008 Jul 31.

School of Computing and Mathematics, Keele University, MacKay Building, Keele, Staffordshire, UK.

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June 2009

The effect of immune selection on the structure of the meningococcal opa protein repertoire.

PLoS Pathog 2008 Mar 14;4(3):e1000020. Epub 2008 Mar 14.

Department of Paediatrics, University of Oxford, Centre for Clinical Vaccinology and Tropical Medicine (CCVTM), Churchill Hospital, Oxford, United Kingdom.

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March 2008

Host community structure and the maintenance of pathogen diversity.

Proc Biol Sci 2007 Jul;274(1619):1715-21

Department of Zoology, University of Oxford, South Parks Road, Oxford OX1 3PS, UK.

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July 2007

The generation of influenza outbreaks by a network of host immune responses against a limited set of antigenic types.

Proc Natl Acad Sci U S A 2007 May 25;104(18):7711-6. Epub 2007 Apr 25.

Department of Zoology, University of Oxford, South Parks Road, Oxford OX1 3PS, United Kingdom.

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May 2007

Capsular serotype-specific attack rates and duration of carriage of Streptococcus pneumoniae in a population of children.

J Infect Dis 2006 Sep 25;194(5):682-8. Epub 2006 Jul 25.

University Department of Paediatrics, Oxford Vaccine Group, John Radcliffe Hospital, University of Oxford, Headington, Oxford, OX3 9DU, United Kingdom.

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September 2006

Negative epistasis between the malaria-protective effects of alpha+-thalassemia and the sickle cell trait.

Nat Genet 2005 Nov 16;37(11):1253-7. Epub 2005 Oct 16.

Kenya Medical Research Institute/Wellcome Trust Programme, Centre for Geographic Medicine Research, Coast, PO Box 230, Kilifi District Hospital, Kilifi, Kenya.

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November 2005

Parasite immune escape: new views into host-parasite interactions.

Authors:
Sunetra Gupta

Curr Opin Microbiol 2005 Aug;8(4):428-33

Department of Zoology, University of Oxford, Oxford, OX1 3PS, United Kingdom.

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August 2005

A model for pathogen population structure with cross-protection depending on the extent of overlap in antigenic variant repertoires.

J Theor Biol 2005 Feb;232(3):363-73

Department of Zoology, University of Oxford, South Parks Road, Oxford OX1 3PS, UK.

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February 2005

The effects of host contact network structure on pathogen diversity and strain structure.

Proc Natl Acad Sci U S A 2004 Jul 9;101(29):10839-44. Epub 2004 Jul 9.

Department of Zoology, University of Oxford, Oxford OX1 3PS, United Kingdom.

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July 2004

Transient cross-reactive immune responses can orchestrate antigenic variation in malaria.

Nature 2004 Jun;429(6991):555-8

Department of Zoology, University of Oxford, South Parks Road, Oxford OX1 3PS, UK.

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June 2004

Evolution and immunology of infectious diseases: what's new? An E-debate.

Infect Genet Evol 2004 Mar;4(1):69-75

Laboratoire Génome, Populations, Interactions, Adaptation UMR 5171, USTL, Place Eugène Bataillon, 34095 Montpellier Cedex 5, France.

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March 2004