Publications by authors named "Stuart Newfeld"

38Publications

Selective Disruption of Synaptic BMP Signaling by a Smad Mutation Adjacent to the Highly Conserved H2 Helix.

Authors:
Tho Huu Nguyen Tae Hee Han Stuart J Newfeld Mihaela Serpe

Genetics 2020 Sep 31;216(1):159-175. Epub 2020 Jul 31.

Section on Cellular Communication, Eunice Kennedy Shiver National Institute of Child Health and Human Development, National Institutes of Health, Bethesda, Maryland 20892

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September 2020

Adult Movement Defects Associated with a CORL Mutation in Display Behavioral Plasticity.

Authors:
Agapi Dimitriadou Nasia Chatzianastasi Panagiota I Zacharaki MaryJane O'Connor Samuel L Goldsmith Michael B O'Connor Christos Consoulas Stuart J Newfeld

G3 (Bethesda) 2020 05 4;10(5):1697-1706. Epub 2020 May 4.

School of Life Sciences, Arizona State University, Tempe AZ 85287

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May 2020

TGF-β Prodomain Alignments Reveal Unexpected Cysteine Conservation Consistent with Phylogenetic Predictions of Cross-Subfamily Heterodimerization.

Authors:
Robert G Wisotzkey Stuart J Newfeld

Genetics 2020 02 16;214(2):447-465. Epub 2019 Dec 16.

School of Life Sciences, Arizona State University, Tempe, Arizona 85287-4501

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February 2020

Transgenic Analyses in Drosophila Reveal That mCORL1 Is Functionally Distinct from mCORL2 and dCORL.

Authors:
Michael J Stinchfield Keiji Miyazawa Stuart J Newfeld

G3 (Bethesda) 2019 11 5;9(11):3781-3789. Epub 2019 Nov 5.

School of Life Sciences, Arizona State University, Tempe, AZ 85287-4501 and

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November 2019

Expression and Function in Insulin Producing Neurons Reversibly Influences Adult Longevity in .

Authors:
Nancy L Tran Samuel L Goldsmith Agapi Dimitriadou Norma T Takaesu Christos Consoulas Stuart J Newfeld

G3 (Bethesda) 2018 08 30;8(9):2979-2990. Epub 2018 Aug 30.

School of Life Sciences, Arizona State University, Tempe AZ 85287-4501

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August 2018

Expression in the Central Nervous System Is Regulated by Stage Specific Interactions of Intertwined Activators and Repressors.

Authors:
Nancy L Tran Norma T Takaesu Elizabeth F Cornell Stuart J Newfeld

G3 (Bethesda) 2018 07 2;8(7):2527-2536. Epub 2018 Jul 2.

School of Life Sciences, Arizona State University, Tempe AZ 85287-4501

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July 2018

FlyExpress 7: An Integrated Discovery Platform To Study Coexpressed Genes Using Hybridization Images in .

Authors:
Sudhir Kumar Charlotte Konikoff Maxwell Sanderford Li Liu Stuart Newfeld Jieping Ye Rob J Kulathinal

G3 (Bethesda) 2017 08 7;7(8):2791-2797. Epub 2017 Aug 7.

Institute for Genomic and Evolutionary Medicine and

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August 2017

lolal Is an Evolutionarily New Epigenetic Regulator of dpp Transcription during Dorsal-Ventral Axis Formation.

Authors:
Janine C Quijano Robert G Wisotzkey Nancy Lan Tran Yunxian Huang Michael J Stinchfield Theodor E Haerry Osamu Shimmi Stuart J Newfeld

Mol Biol Evol 2016 10 8;33(10):2621-32. Epub 2016 Jul 8.

School of Life Sciences, Arizona State University

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October 2016

New gene evolution in the bonus-TIF1-γ/TRIM33 family impacted the architecture of the vertebrate dorsal-ventral patterning network.

Authors:
Robert G Wisotzkey Janine C Quijano Michael J Stinchfield Stuart J Newfeld

Mol Biol Evol 2014 Sep 31;31(9):2309-21. Epub 2014 May 31.

School of Life Sciences, Arizona State University

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September 2014

A mesh generation and machine learning framework for Drosophila gene expression pattern image analysis.

Authors:
Wenlu Zhang Daming Feng Rongjian Li Andrey Chernikov Nikos Chrisochoides Christopher Osgood Charlotte Konikoff Stuart Newfeld Sudhir Kumar Shuiwang Ji

BMC Bioinformatics 2013 Dec 28;14:372. Epub 2013 Dec 28.

Department of Computer Science, Old Dominion University, Norfolk, VA 23529, USA.

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December 2013

Automated annotation of developmental stages of Drosophila embryos in images containing spatial patterns of expression.

Authors:
Lei Yuan Cheng Pan Shuiwang Ji Michael McCutchan Zhi-Hua Zhou Stuart J Newfeld Sudhir Kumar Jieping Ye

Bioinformatics 2014 Jan 3;30(2):266-73. Epub 2013 Dec 3.

School of Computing, Informatics, and Decision Systems Engineering, Center for Evolutionary Medicine and Informatics, The Biodesign Institute, Arizona State University, Tempe, AZ 85287, USA, National Key Laboratory for Novel Software Technology, Nanjing University, Nanjing 210023, China, School of Life Sciences, Arizona State University, Tempe, AZ 85287, USA and Center of Excellence in Genomic Medicine Research, King Abdulaziz University, Jeddah, Saudi Arabia.

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January 2014

Image-level and group-level models for Drosophila gene expression pattern annotation.

Authors:
Qian Sun Sherin Muckatira Lei Yuan Shuiwang Ji Stuart Newfeld Sudhir Kumar Jieping Ye

BMC Bioinformatics 2013 Dec 3;14:350. Epub 2013 Dec 3.

Center for Evolutionary Medicine and Informatics, The Biodesign Institute, Arizona State University, Tempe, AZ, 85287, USA.

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December 2013

Meeting report - TGF-β superfamily: signaling in development and disease.

Authors:
Ying E Zhang Stuart J Newfeld

J Cell Sci 2013 Nov;126(Pt 21):4809-13

Laboratory of Cellular and Molecular Biology, Center for Cancer Research, National Cancer Institute, National Institutes of Health, Bethesda, MD 20892, USA.

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November 2013

New insights into extracellular and post-translational regulation of TGF-β family signalling pathways.

Authors:
Osamu Shimmi Stuart J Newfeld

J Biochem 2013 Jul 22;154(1):11-9. Epub 2013 May 22.

Institute of Biotechnology, University of Helsinki, Helsinki, Finland.

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July 2013

Hippo pathway phylogenetics predicts monoubiquitylation of Salvador and Merlin/Nf2.

Authors:
Robert G Wisotzkey Charlotte E Konikoff Stuart J Newfeld

PLoS One 2012 14;7(12):e51599. Epub 2012 Dec 14.

NextBio, Santa Clara, California, United States of America.

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June 2013

Drosophila CORL is required for Smad2-mediated activation of Ecdysone Receptor expression in the mushroom body.

Authors:
Norma T Takaesu Michael J Stinchfield Kazumichi Shimizu Mayu Arase Janine C Quijano Tetsuro Watabe Kohei Miyazono Stuart J Newfeld

Development 2012 Sep 8;139(18):3392-401. Epub 2012 Aug 8.

School of Life Sciences, Arizona State University, Tempe, AZ 85287-4501, USA.

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September 2012

Fat facets deubiquitylation of Medea/Smad4 modulates interpretation of a Dpp morphogen gradient.

Authors:
Michael J Stinchfield Norma T Takaesu Janine C Quijano Ashley M Castillo Nina Tiusanen Osamu Shimmi Elena Enzo Sirio Dupont Stefano Piccolo Stuart J Newfeld

Development 2012 Aug 28;139(15):2721-9. Epub 2012 Jun 28.

School of Life Sciences, Arizona State University, Tempe, AZ 85287-4501, USA.

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August 2012

Regulation of TGF-β signal transduction by mono- and deubiquitylation of Smads.

Authors:
Sirio Dupont Masafumi Inui Stuart J Newfeld

FEBS Lett 2012 Jul 24;586(14):1913-20. Epub 2012 Mar 24.

Department of Biomedical Sciences, University of Padova, Padova, Italy.

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July 2012

FlyExpress: visual mining of spatiotemporal patterns for genes and publications in Drosophila embryogenesis.

Authors:
Sudhir Kumar Charlotte Konikoff Bernard Van Emden Christopher Busick Kailah T Davis Shuiwang Ji Lin-Wei Wu Hector Ramos Thomas Brody Sethuraman Panchanathan Jieping Ye Timothy L Karr Kristyn Gerold Michael McCutchan Stuart J Newfeld

Bioinformatics 2011 Dec 12;27(23):3319-20. Epub 2011 Oct 12.

Center for Evolutionary Medicine and Informatics, Biodesign Institute, Arizona State University, Tempe, AZ 85287, USA.

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December 2011

Comparison of embryonic expression within multigene families using the FlyExpress discovery platform reveals more spatial than temporal divergence.

Authors:
Charlotte E Konikoff Timothy L Karr Michael McCutchan Stuart J Newfeld Sudhir Kumar

Dev Dyn 2012 Jan 29;241(1):150-60. Epub 2011 Sep 29.

School of Life Sciences and Center for Evolutionary Medicine and Informatics in the Biodesign Institute, Arizona State University, Tempe, Arizona 85287, USA.

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January 2012

Wg signaling via Zw3 and mad restricts self-renewal of sensory organ precursor cells in Drosophila.

Authors:
Janine C Quijano Michael J Stinchfield Stuart J Newfeld

Genetics 2011 Nov 25;189(3):809-24. Epub 2011 Aug 25.

School of Life Sciences, Arizona State University, Tempe, Arizona 85287-4501, USA.

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November 2011

The Sno oncogene antagonizes Wingless signaling during wing development in Drosophila.

Authors:
Janine C Quijano Michael J Stinchfield Brad Zerlanko Ying Y Gibbens Norma T Takaesu Cathy Hyman-Walsh David Wotton Stuart J Newfeld

PLoS One 2010 Jul 16;5(7):e11619. Epub 2010 Jul 16.

School of Life Sciences, Arizona State University, Tempe, Arizona, United States of America.

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July 2010

Distinct molecular evolutionary mechanisms underlie the functional diversification of the Wnt and TGFbeta signaling pathways.

Authors:
Charlotte E Konikoff Robert G Wisotzkey Michael J Stinchfield Stuart J Newfeld

J Mol Evol 2010 Apr 26;70(4):303-12. Epub 2010 Mar 26.

School of Life Sciences, Arizona State University, Tempe, AZ 85287-4501, USA.

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April 2010

Informatics approaches to understanding TGFbeta pathway regulation.

Authors:
Pascal Kahlem Stuart J Newfeld

Development 2009 Nov;136(22):3729-40

EMBL, European Bioinformatics Institute, Hinxton, Saffron Waldon CB10 1SD, UK.

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November 2009

FAM/USP9x, a deubiquitinating enzyme essential for TGFbeta signaling, controls Smad4 monoubiquitination.

Authors:
Sirio Dupont Anant Mamidi Michelangelo Cordenonsi Marco Montagner Luca Zacchigna Maddalena Adorno Graziano Martello Michael J Stinchfield Sandra Soligo Leonardo Morsut Masafumi Inui Stefano Moro Nicola Modena Francesco Argenton Stuart J Newfeld Stefano Piccolo

Cell 2009 Jan;136(1):123-35

Department of Histology, Microbiology, and Medical Biotechnologies, University of Padua School of Medicine, viale Colombo 3, 35131 Padua, Italy.

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January 2009

Current topics in organogenesis and gametogenesis.

Authors:
Gerard Campbell Stuart J Newfeld

Fly (Austin) 2008 May-Jun;2(3):125-8. Epub 2008 May 23.

Department of Biological Sciences, University of Pittsburgh, Pittsburgh, Pennsylvania, USA.

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December 2010

Salmonella pathogenesis reveals that BMP signaling regulates blood cell homeostasis and immune responses in Drosophila.

Authors:
Joel L Frandsen Bronwyn Gunn Selen Muratoglu Nancy Fossett Stuart J Newfeld

Proc Natl Acad Sci U S A 2008 Sep 24;105(39):14952-7. Epub 2008 Sep 24.

School of Life Sciences, Arizona State University, Tempe, AZ 85287-4501, USA.

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September 2008

Lysine conservation and context in TGFbeta and Wnt signaling suggest new targets and general themes for posttranslational modification.

Authors:
Charlotte E Konikoff Robert G Wisotzkey Stuart J Newfeld

J Mol Evol 2008 Oct 17;67(4):323-33. Epub 2008 Sep 17.

School of Life Sciences, Arizona State University, Tempe, AZ 85287-4501, USA.

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October 2008

A combinatorial enhancer recognized by Mad, TCF and Brinker first activates then represses dpp expression in the posterior spiracles of Drosophila.

Authors:
Norma T Takaesu Denis S Bulanin Aaron N Johnson Teresa V Orenic Stuart J Newfeld

Dev Biol 2008 Jan 24;313(2):829-43. Epub 2007 Oct 24.

School of Life Sciences, Arizona State University, Tempe, AZ 85287-4501, USA.

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January 2008

Phylogenetic and genomewide analyses suggest a functional relationship between kayak, the Drosophila fos homolog, and fig, a predicted protein phosphatase 2c nested within a kayak intron.

Authors:
Stephanie G Hudson Matthew J Garrett Joseph W Carlson Gos Micklem Susan E Celniker Elliott S Goldstein Stuart J Newfeld

Genetics 2007 Nov;177(3):1349-61

School of Life Sciences, Arizona State University, Tempe, Arizona 85287-4501, USA.

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November 2007

Evolution of genes and genomes on the Drosophila phylogeny.

Authors:
Andrew G Clark Michael B Eisen Douglas R Smith Casey M Bergman Brian Oliver Therese A Markow Thomas C Kaufman Manolis Kellis William Gelbart Venky N Iyer Daniel A Pollard Timothy B Sackton Amanda M Larracuente Nadia D Singh Jose P Abad Dawn N Abt Boris Adryan Montserrat Aguade Hiroshi Akashi Wyatt W Anderson Charles F Aquadro David H Ardell Roman Arguello Carlo G Artieri Daniel A Barbash Daniel Barker Paolo Barsanti Phil Batterham Serafim Batzoglou Dave Begun Arjun Bhutkar Enrico Blanco Stephanie A Bosak Robert K Bradley Adrianne D Brand Michael R Brent Angela N Brooks Randall H Brown Roger K Butlin Corrado Caggese Brian R Calvi A Bernardo de Carvalho Anat Caspi Sergio Castrezana Susan E Celniker Jean L Chang Charles Chapple Sourav Chatterji Asif Chinwalla Alberto Civetta Sandra W Clifton Josep M Comeron James C Costello Jerry A Coyne Jennifer Daub Robert G David Arthur L Delcher Kim Delehaunty Chuong B Do Heather Ebling Kevin Edwards Thomas Eickbush Jay D Evans Alan Filipski Sven Findeiss Eva Freyhult Lucinda Fulton Robert Fulton Ana C L Garcia Anastasia Gardiner David A Garfield Barry E Garvin Greg Gibson Don Gilbert Sante Gnerre Jennifer Godfrey Robert Good Valer Gotea Brenton Gravely Anthony J Greenberg Sam Griffiths-Jones Samuel Gross Roderic Guigo Erik A Gustafson Wilfried Haerty Matthew W Hahn Daniel L Halligan Aaron L Halpern Gillian M Halter Mira V Han Andreas Heger LaDeana Hillier Angie S Hinrichs Ian Holmes Roger A Hoskins Melissa J Hubisz Dan Hultmark Melanie A Huntley David B Jaffe Santosh Jagadeeshan William R Jeck Justin Johnson Corbin D Jones William C Jordan Gary H Karpen Eiko Kataoka Peter D Keightley Pouya Kheradpour Ewen F Kirkness Leonardo B Koerich Karsten Kristiansen Dave Kudrna Rob J Kulathinal Sudhir Kumar Roberta Kwok Eric Lander Charles H Langley Richard Lapoint Brian P Lazzaro So-Jeong Lee Lisa Levesque Ruiqiang Li Chiao-Feng Lin Michael F Lin Kerstin Lindblad-Toh Ana Llopart Manyuan Long Lloyd Low Elena Lozovsky Jian Lu Meizhong Luo Carlos A Machado Wojciech Makalowski Mar Marzo Muneo Matsuda Luciano Matzkin Bryant McAllister Carolyn S McBride Brendan McKernan Kevin McKernan Maria Mendez-Lago Patrick Minx Michael U Mollenhauer Kristi Montooth Stephen M Mount Xu Mu Eugene Myers Barbara Negre Stuart Newfeld Rasmus Nielsen Mohamed A F Noor Patrick O'Grady Lior Pachter Montserrat Papaceit Matthew J Parisi Michael Parisi Leopold Parts Jakob S Pedersen Graziano Pesole Adam M Phillippy Chris P Ponting Mihai Pop Damiano Porcelli Jeffrey R Powell Sonja Prohaska Kim Pruitt Marta Puig Hadi Quesneville Kristipati Ravi Ram David Rand Matthew D Rasmussen Laura K Reed Robert Reenan Amy Reily Karin A Remington Tania T Rieger Michael G Ritchie Charles Robin Yu-Hui Rogers Claudia Rohde Julio Rozas Marc J Rubenfield Alfredo Ruiz Susan Russo Steven L Salzberg Alejandro Sanchez-Gracia David J Saranga Hajime Sato Stephen W Schaeffer Michael C Schatz Todd Schlenke Russell Schwartz Carmen Segarra Rama S Singh Laura Sirot Marina Sirota Nicholas B Sisneros Chris D Smith Temple F Smith John Spieth Deborah E Stage Alexander Stark Wolfgang Stephan Robert L Strausberg Sebastian Strempel David Sturgill Granger Sutton Granger G Sutton Wei Tao Sarah Teichmann Yoshiko N Tobari Yoshihiko Tomimura Jason M Tsolas Vera L S Valente Eli Venter J Craig Venter Saverio Vicario Filipe G Vieira Albert J Vilella Alfredo Villasante Brian Walenz Jun Wang Marvin Wasserman Thomas Watts Derek Wilson Richard K Wilson Rod A Wing Mariana F Wolfner Alex Wong Gane Ka-Shu Wong Chung-I Wu Gabriel Wu Daisuke Yamamoto Hsiao-Pei Yang Shiaw-Pyng Yang James A Yorke Kiyohito Yoshida Evgeny Zdobnov Peili Zhang Yu Zhang Aleksey V Zimin Jennifer Baldwin Amr Abdouelleil Jamal Abdulkadir Adal Abebe Brikti Abera Justin Abreu St Christophe Acer Lynne Aftuck Allen Alexander Peter An Erica Anderson Scott Anderson Harindra Arachi Marc Azer Pasang Bachantsang Andrew Barry Tashi Bayul Aaron Berlin Daniel Bessette Toby Bloom Jason Blye Leonid Boguslavskiy Claude Bonnet Boris Boukhgalter Imane Bourzgui Adam Brown Patrick Cahill Sheridon Channer Yama Cheshatsang Lisa Chuda Mieke Citroen Alville Collymore Patrick Cooke Maura Costello Katie D'Aco Riza Daza Georgius De Haan Stuart DeGray Christina DeMaso Norbu Dhargay Kimberly Dooley Erin Dooley Missole Doricent Passang Dorje Kunsang Dorjee Alan Dupes Richard Elong Jill Falk Abderrahim Farina Susan Faro Diallo Ferguson Sheila Fisher Chelsea D Foley Alicia Franke Dennis Friedrich Loryn Gadbois Gary Gearin Christina R Gearin Georgia Giannoukos Tina Goode Joseph Graham Edward Grandbois Sharleen Grewal Kunsang Gyaltsen Nabil Hafez Birhane Hagos Jennifer Hall Charlotte Henson Andrew Hollinger Tracey Honan Monika D Huard Leanne Hughes Brian Hurhula M Erii Husby Asha Kamat Ben Kanga Seva Kashin Dmitry Khazanovich Peter Kisner Krista Lance Marcia Lara William Lee Niall Lennon Frances Letendre Rosie LeVine Alex Lipovsky Xiaohong Liu Jinlei Liu Shangtao Liu Tashi Lokyitsang Yeshi Lokyitsang Rakela Lubonja Annie Lui Pen MacDonald Vasilia Magnisalis Kebede Maru Charles Matthews William McCusker Susan McDonough Teena Mehta James Meldrim Louis Meneus Oana Mihai Atanas Mihalev Tanya Mihova Rachel Mittelman Valentine Mlenga Anna Montmayeur Leonidas Mulrain Adam Navidi Jerome Naylor Tamrat Negash Thu Nguyen Nga Nguyen Robert Nicol Choe Norbu Nyima Norbu Nathaniel Novod Barry O'Neill Sahal Osman Eva Markiewicz Otero L Oyono Christopher Patti Pema Phunkhang Fritz Pierre Margaret Priest Sujaa Raghuraman Filip Rege Rebecca Reyes Cecil Rise Peter Rogov Keenan Ross Elizabeth Ryan Sampath Settipalli Terry Shea Ngawang Sherpa Lu Shi Diana Shih Todd Sparrow Jessica Spaulding John Stalker Nicole Stange-Thomann Sharon Stavropoulos Catherine Stone Christopher Strader Senait Tesfaye Talene Thomson Yama Thoulutsang Dawa Thoulutsang Kerri Topham Ira Topping Tsamla Tsamla Helen Vassiliev Andy Vo Tsering Wangchuk Tsering Wangdi Michael Weiand Jane Wilkinson Adam Wilson Shailendra Yadav Geneva Young Qing Yu Lisa Zembek Danni Zhong Andrew Zimmer Zac Zwirko David B Jaffe Pablo Alvarez Will Brockman Jonathan Butler CheeWhye Chin Sante Gnerre Manfred Grabherr Michael Kleber Evan Mauceli Iain MacCallum

Nature 2007 Nov;450(7167):203-18

Department of Molecular Biology and Genetics, Cornell University, Ithaca, New York 14853, USA.

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November 2007

Defective decapentaplegic signaling results in heart overgrowth and reduced cardiac output in Drosophila.

Authors:
Aaron N Johnson Lindsey A Burnett Julia Sellin Achim Paululat Stuart J Newfeld

Genetics 2007 Jul 16;176(3):1609-24. Epub 2007 May 16.

School of Life Sciences, Arizona State University, Tempe, Arizona 85287-4501, USA.

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July 2007

dSno facilitates baboon signaling in the Drosophila brain by switching the affinity of Medea away from Mad and toward dSmad2.

Authors:
Norma T Takaesu Cathy Hyman-Walsh Ying Ye Robert G Wisotzkey Michael J Stinchfield Michael B O'connor David Wotton Stuart J Newfeld

Genetics 2006 Nov 1;174(3):1299-313. Epub 2006 Sep 1.

School of Life Sciences, Arizona State University, Tempe 85287-4501, USA.

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November 2006

DNA-binding domain mutations in SMAD genes yield dominant-negative proteins or a neomorphic protein that can activate WG target genes in Drosophila.

Authors:
Norma T Takaesu Eric Herbig David Zhitomersky Michael B O'Connor Stuart J Newfeld

Development 2005 Nov 28;132(21):4883-94. Epub 2005 Sep 28.

School of Life Sciences, Arizona State University, Tempe, AZ 85287-4501, USA.

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November 2005

Drosophila TGIF proteins are transcriptional activators.

Authors:
Cathy A Hyman Laurent Bartholin Stuart J Newfeld David Wotton

Mol Cell Biol 2003 Dec;23(24):9262-74

Department of Biochemistry and Molecular Genetics, and Center for Cell Signaling, University of Virginia, Charlottesville, VA 22908, USA.

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December 2003

The TGF-beta family: signaling pathways, developmental roles, and tumor suppressor activities.

Authors:
Aaron N Johnson Stuart J Newfeld

ScientificWorldJournal 2002 Apr 5;2:892-925. Epub 2002 Apr 5.

Department of Biology, Arizona State University, Tempe, AZ 85287-1501, USA.

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April 2002

Alpha/beta hydrolase2, a predicated gene adjacent to mad in Drosophila melanogaster, belongs to a new global multigene family and is associated with obesity.

Authors:
Robert G Wisotzkey Aaron N Johnson Norma T Takaesu Stuart J Newfeld

J Mol Evol 2003 Mar;56(3):351-61

Deltagen, Incorporated, Menlo Park, CA 94025, USA.

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March 2003

BEST: a novel computational approach for comparing gene expression patterns from early stages of Drosophila melanogaster development.

Authors:
Sudhir Kumar Karthik Jayaraman Sethuraman Panchanathan Rajalakshmi Gurunathan Ana Marti-Subirana Stuart J Newfeld

Genetics 2002 Dec;162(4):2037-47

Center for Evolutionary Functional Genomics, Arizona State University, Tempe, Arizona 85287, USA.

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December 2002