Stuart K Kim

Stuart K Kim

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Stuart K Kim

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Integrative Genomics Analysis Unravels Tissue-Specific Pathways, Networks, and Key Regulators of Blood Pressure Regulation.

Front Cardiovasc Med 2019 12;6:21. Epub 2019 Mar 12.

Department of Integrative Biology and Physiology, University of California, Los Angeles, Los Angeles, CA, United States.

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http://dx.doi.org/10.3389/fcvm.2019.00021DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6423920PMC
March 2019

Identification of 613 new loci associated with heel bone mineral density and a polygenic risk score for bone mineral density, osteoporosis and fracture.

Authors:
Stuart K Kim

PLoS One 2018 26;13(7):e0200785. Epub 2018 Jul 26.

Department of Developmental Biology, Stanford University Medical Center, Stanford, California, United States of America.

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http://journals.plos.org/plosone/article?id=10.1371/journal.pone.0200785PLOS
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6062019PMC
January 2019

Two Genetic Variants Associated with Plantar Fascial Disorders.

Int J Sports Med 2018 Apr 13;39(4):314-321. Epub 2018 Mar 13.

Dept. Orthopaedic Surgery, Stanford University Medical Center, Stanford CA, USA.

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http://dx.doi.org/10.1055/s-0044-100280DOI Listing
April 2018

Genome-wide association study identifies a locus associated with rotator cuff injury.

PLoS One 2017 11;12(12):e0189317. Epub 2017 Dec 11.

Department of Developmental Biology, Stanford University Medical Center, Stanford, CA, United States of America.

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http://journals.plos.org/plosone/article?id=10.1371/journal.pone.0189317PLOS
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5724859PMC
January 2018

A Genetic Marker Associated with De Quervain's Tenosynovitis.

Int J Sports Med 2017 Nov 6;38(12):942-948. Epub 2017 Oct 6.

Department of Medicine, Stanford University, Stanford, United States.

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http://dx.doi.org/10.1055/s-0043-116669DOI Listing
November 2017

Two genetic loci associated with ankle injury.

PLoS One 2017 28;12(9):e0185355. Epub 2017 Sep 28.

Dept. of Medicine, Stanford Prevention Research Center, Stanford University School of Medicine, Stanford, CA, United States of America.

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http://journals.plos.org/plosone/article?id=10.1371/journal.pone.0185355PLOS
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5619760PMC
October 2017

Quantitative Analysis of Synthetic Cell Lineage Tracing Using Nuclease Barcoding.

ACS Synth Biol 2017 06 10;6(6):936-942. Epub 2017 Mar 10.

Department of Bioengineering, Stanford University , Stanford, California 94305, United States.

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http://dx.doi.org/10.1021/acssynbio.6b00309DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5724935PMC
June 2017

The genetics of blood pressure regulation and its target organs from association studies in 342,415 individuals.

Authors:
Georg B Ehret Teresa Ferreira Daniel I Chasman Anne U Jackson Ellen M Schmidt Toby Johnson Gudmar Thorleifsson Jian'an Luan Lousie A Donnelly Stavroula Kanoni Ann-Kristin Petersen Vasyl Pihur Rona J Strawbridge Dmitry Shungin Maria F Hughes Osorio Meirelles Marika Kaakinen Nabila Bouatia-Naji Kati Kristiansson Sonia Shah Marcus E Kleber Xiuqing Guo Leo-Pekka Lyytikäinen Cristiano Fava Niclas Eriksson Ilja M Nolte Patrik K Magnusson Elias L Salfati Loukianos S Rallidis Elizabeth Theusch Andrew J P Smith Lasse Folkersen Kate Witkowska Tune H Pers Roby Joehanes Stuart K Kim Lazaros Lataniotis Rick Jansen Andrew D Johnson Helen Warren Young Jin Kim Wei Zhao Ying Wu Bamidele O Tayo Murielle Bochud Devin Absher Linda S Adair Najaf Amin Dan E Arking Tomas Axelsson Damiano Baldassarre Beverley Balkau Stefania Bandinelli Michael R Barnes Inês Barroso Stephen Bevan Joshua C Bis Gyda Bjornsdottir Michael Boehnke Eric Boerwinkle Lori L Bonnycastle Dorret I Boomsma Stefan R Bornstein Morris J Brown Michel Burnier Claudia P Cabrera John C Chambers I-Shou Chang Ching-Yu Cheng Peter S Chines Ren-Hua Chung Francis S Collins John M Connell Angela Döring Jean Dallongeville John Danesh Ulf de Faire Graciela Delgado Anna F Dominiczak Alex S F Doney Fotios Drenos Sarah Edkins John D Eicher Roberto Elosua Stefan Enroth Jeanette Erdmann Per Eriksson Tonu Esko Evangelos Evangelou Alun Evans Tove Fall Martin Farrall Janine F Felix Jean Ferrières Luigi Ferrucci Myriam Fornage Terrence Forrester Nora Franceschini Oscar H Franco Duran Anders Franco-Cereceda Ross M Fraser Santhi K Ganesh He Gao Karl Gertow Francesco Gianfagna Bruna Gigante Franco Giulianini Anuj Goel Alison H Goodall Mark O Goodarzi Mathias Gorski Jürgen Gräßler Christopher Groves Vilmundur Gudnason Ulf Gyllensten Göran Hallmans Anna-Liisa Hartikainen Maija Hassinen Aki S Havulinna Caroline Hayward Serge Hercberg Karl-Heinz Herzig Andrew A Hicks Aroon D Hingorani Joel N Hirschhorn Albert Hofman Jostein Holmen Oddgeir Lingaas Holmen Jouke-Jan Hottenga Phil Howard Chao A Hsiung Steven C Hunt M Arfan Ikram Thomas Illig Carlos Iribarren Richard A Jensen Mika Kähönen Hyun Kang Sekar Kathiresan Brendan J Keating Kay-Tee Khaw Yun Kyoung Kim Eric Kim Mika Kivimaki Norman Klopp Genovefa Kolovou Pirjo Komulainen Jaspal S Kooner Gulum Kosova Ronald M Krauss Diana Kuh Zoltan Kutalik Johanna Kuusisto Kirsti Kvaløy Timo A Lakka Nanette R Lee I-Te Lee Wen-Jane Lee Daniel Levy Xiaohui Li Kae-Woei Liang Honghuang Lin Li Lin Jaana Lindström Stéphane Lobbens Satu Männistö Gabriele Müller Martina Müller-Nurasyid François Mach Hugh S Markus Eirini Marouli Mark I McCarthy Colin A McKenzie Pierre Meneton Cristina Menni Andres Metspalu Vladan Mijatovic Leena Moilanen May E Montasser Andrew D Morris Alanna C Morrison Antonella Mulas Ramaiah Nagaraja Narisu Narisu Kjell Nikus Christopher J O'Donnell Paul F O'Reilly Ken K Ong Fred Paccaud Cameron D Palmer Afshin Parsa Nancy L Pedersen Brenda W Penninx Markus Perola Annette Peters Neil Poulter Peter P Pramstaller Bruce M Psaty Thomas Quertermous Dabeeru C Rao Asif Rasheed N William N W R Rayner Frida Renström Rainer Rettig Kenneth M Rice Robert Roberts Lynda M Rose Jacques Rossouw Nilesh J Samani Serena Sanna Jouko Saramies Heribert Schunkert Sylvain Sebert Wayne H-H Sheu Young-Ah Shin Xueling Sim Johannes H Smit Albert V Smith Maria X Sosa Tim D Spector Alena Stančáková Alice Stanton Kathleen E Stirrups Heather M Stringham Johan Sundstrom Amy J Swift Ann-Christine Syvänen E-Shyong Tai Toshiko Tanaka Kirill V Tarasov Alexander Teumer Unnur Thorsteinsdottir Martin D Tobin Elena Tremoli Andre G Uitterlinden Matti Uusitupa Ahmad Vaez Dhananjay Vaidya Cornelia M van Duijn Erik P A van Iperen Ramachandran S Vasan Germaine C Verwoert Jarmo Virtamo Veronique Vitart Benjamin F Voight Peter Vollenweider Aline Wagner Louise V Wain Nicholas J Wareham Hugh Watkins Alan B Weder Harm-Jan Westra Rainford Wilks Tom Wilsgaard James F Wilson Tien Y Wong Tsun-Po Yang Jie Yao Loic Yengo Weihua Zhang Jing Hua Zhao Xiaofeng Zhu Pascal Bovet Richard S Cooper Karen L Mohlke Danish Saleheen Jong-Young Lee Paul Elliott Hinco J Gierman Cristen J Willer Lude Franke G Kees Hovingh Kent D Taylor George Dedoussis Peter Sever Andrew Wong Lars Lind Themistocles L Assimes Inger Njølstad Peter Eh Schwarz Claudia Langenberg Harold Snieder Mark J Caulfield Olle Melander Markku Laakso Juha Saltevo Rainer Rauramaa Jaakko Tuomilehto Erik Ingelsson Terho Lehtimäki Kristian Hveem Walter Palmas Winfried März Meena Kumari Veikko Salomaa Yii-Der I Chen Jerome I Rotter Philippe Froguel Marjo-Riitta Jarvelin Edward G Lakatta Kari Kuulasmaa Paul W Franks Anders Hamsten H-Erich Wichmann Colin N A Palmer Kari Stefansson Paul M Ridker Ruth J F Loos Aravinda Chakravarti Panos Deloukas Andrew P Morris Christopher Newton-Cheh Patricia B Munroe

Nat Genet 2016 10 12;48(10):1171-1184. Epub 2016 Sep 12.

Clinical Pharmacology, William Harvey Research Institute, Queen Mary University of London, London, EC1M 6BQ, UK.

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http://dx.doi.org/10.1038/ng.3667DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5042863PMC
October 2016

An Abundant Class of Non-coding DNA Can Prevent Stochastic Gene Silencing in the C. elegans Germline.

Cell 2016 Jul 30;166(2):343-357. Epub 2016 Jun 30.

Department of Pathology, Stanford University, Stanford, CA 94305, USA; Department of Genetics, Stanford University, Stanford, CA 94305, USA. Electronic address:

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http://dx.doi.org/10.1016/j.cell.2016.05.072DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4947018PMC
July 2016

Dietary and microbiome factors determine longevity in Caenorhabditis elegans.

Aging (Albany NY) 2016 07;8(7):1513-39

Instituto de Biología Molecular y Celular del Cáncer, Centro de Investigación del Cáncer, CSIC-Universidad de Salamanca, Campus Miguel de Unamuno, E-37007 Salamanca, Spain.

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http://dx.doi.org/10.18632/aging.101008DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4993345PMC
July 2016

New insights into old worm proteomes.

Worm 2016 4;5(3):e1184391. Epub 2016 May 4.

Department of Genetics, Stanford University, Stanford, CA, USA; Department of Developmental Biology, Stanford University, Stanford, CA, USA.

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http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5022666PMC
http://dx.doi.org/10.1080/21624054.2016.1184391DOI Listing
May 2016

Deactivation of the GATA Transcription Factor ELT-2 Is a Major Driver of Normal Aging in C. elegans.

PLoS Genet 2016 Apr 12;12(4):e1005956. Epub 2016 Apr 12.

Departments of Genetics and Developmental Biology, Stanford University Medical Center, Stanford, California, United States of America.

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http://dx.doi.org/10.1371/journal.pgen.1005956DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4829211PMC
April 2016

Applying personal genetic data to injury risk assessment in athletes.

PLoS One 2014 28;10(4):e0122676. Epub 2015 Apr 28.

Departments of Developmental Biology and Genetics, Stanford University Medical Center, Stanford, CA, 94305, United States of America.

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http://journals.plos.org/plosone/article?id=10.1371/journal.pone.0122676PLOS
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4412532PMC
December 2015

Reproductive Aging Drives Protein Accumulation in the Uterus and Limits Lifespan in C. elegans.

PLoS Genet 2015 Dec 11;11(12):e1005725. Epub 2015 Dec 11.

Department of Genetics, Stanford University, Stanford, California, United States of America.

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http://dx.doi.org/10.1371/journal.pgen.1005725DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4676719PMC
December 2015

Genome-Wide Scan Informed by Age-Related Disease Identifies Loci for Exceptional Human Longevity.

PLoS Genet 2015 Dec 17;11(12):e1005728. Epub 2015 Dec 17.

Department of Developmental Biology, Stanford University, Stanford, California, United States of America.

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http://dx.doi.org/10.1371/journal.pgen.1005728DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4683064PMC
December 2015

The Inflammatory Transcription Factors NFκB, STAT1 and STAT3 Drive Age-Associated Transcriptional Changes in the Human Kidney.

PLoS Genet 2015 Dec 17;11(12):e1005734. Epub 2015 Dec 17.

Department of Developmental Biology, Stanford University, Stanford, California, United States of America.

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http://dx.doi.org/10.1371/journal.pgen.1005734DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4682820PMC
December 2015

Optimal multiple testing under a Gaussian prior on the effect sizes.

Biometrika 2015 Dec 4;102(4):753-766. Epub 2015 Nov 4.

Department of Statistics, Stanford University, Stanford, California 94305, U.S.A.

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http://dx.doi.org/10.1093/biomet/asv050DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4813057PMC
December 2015

Whole-genome sequencing of the world's oldest people.

PLoS One 2014 12;9(11):e112430. Epub 2014 Nov 12.

Depts. of Developmental Biology and Genetics, Stanford University, Stanford, CA, United States of America.

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http://journals.plos.org/plosone/article?id=10.1371/journal.pone.0112430PLOS
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4229186PMC
July 2015

The dawning age of genetic testing for sports injuries.

Clin J Sport Med 2015 Jan;25(1):1-5

*Departments of Developmental Biology and Genetics, Stanford University Medical Center, Stanford, California; and †Division of Epidemiology, Department of Health Research and Policy, Stanford University School of Medicine, Stanford, California.

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http://dx.doi.org/10.1097/JSM.0000000000000158DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4278350PMC
January 2015

Synthesis of 53 tissue and cell line expression QTL datasets reveals master eQTLs.

BMC Genomics 2014 Jun 27;15:532. Epub 2014 Jun 27.

Division of Intramural Research, National Heart, Lung and Blood Institute, Cardiovascular Epidemiology and Human Genomics Branch, The Framingham Heart Study, 73 Mt, Wayte Ave,, Suite #2, Framingham, MA, USA.

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http://search.proquest.com/openview/f74ec12928995ecd3f4c9708
Web Search
http://bmcgenomics.biomedcentral.com/articles/10.1186/1471-2
Publisher Site
http://dx.doi.org/10.1186/1471-2164-15-532DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4102726PMC
June 2014

The GATA transcription factor/MTA-1 homolog egr-1 promotes longevity and stress resistance in Caenorhabditis elegans.

Aging Cell 2014 Apr 6;13(2):329-39. Epub 2013 Dec 6.

Department of Genetics, Stanford University Medical Center, Stanford, CA, 94305, USA.

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http://doi.wiley.com/10.1111/acel.12179
Publisher Site
http://dx.doi.org/10.1111/acel.12179DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4331783PMC
April 2014

Reconciliation of daf-2 suppression by elt-3 in Caenorhabditis elegans from Tonsaker et al. (2012) and Kim et al. (2012).

Mech Ageing Dev 2013 Jan-Feb;134(1-2):64-5. Epub 2012 Dec 21.

Department of Developmental Biology, Stanford University School of Medicine, Stanford, CA 94305, United States.

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http://dx.doi.org/10.1016/j.mad.2012.12.004DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4709843PMC
July 2013

Roles of the developmental regulator unc-62/Homothorax in limiting longevity in Caenorhabditis elegans.

PLoS Genet 2013 28;9(2):e1003325. Epub 2013 Feb 28.

Department of Genetics, Stanford University Medical Center, Stanford, California, USA.

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http://dx.doi.org/10.1371/journal.pgen.1003325DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3585033PMC
June 2013

Integrative analysis of C. elegans modENCODE ChIP-seq data sets to infer gene regulatory interactions.

Genome Res 2013 Jun 26;23(6):941-53. Epub 2013 Mar 26.

Department of Genetics and Department of Developmental Biology, Stanford University Medical Center, Stanford, California 94305, USA.

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http://dx.doi.org/10.1101/gr.152876.112DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3668362PMC
June 2013

The GATA transcription factor egl-27 delays aging by promoting stress resistance in Caenorhabditis elegans.

PLoS Genet 2012 13;8(12):e1003108. Epub 2012 Dec 13.

Cancer Biology Program and Department of Developmental Biology, Stanford University School of Medicine, Stanford, California, United States of America.

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http://dx.doi.org/10.1371/journal.pgen.1003108DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3521710PMC
May 2013

Integration of genome-wide association studies with biological knowledge identifies six novel genes related to kidney function.

Authors:
Daniel I Chasman Christian Fuchsberger Cristian Pattaro Alexander Teumer Carsten A Böger Karlhans Endlich Matthias Olden Ming-Huei Chen Adrienne Tin Daniel Taliun Man Li Xiaoyi Gao Mathias Gorski Qiong Yang Claudia Hundertmark Meredith C Foster Conall M O'Seaghdha Nicole Glazer Aaron Isaacs Ching-Ti Liu Albert V Smith Jeffrey R O'Connell Maksim Struchalin Toshiko Tanaka Guo Li Andrew D Johnson Hinco J Gierman Mary F Feitosa Shih-Jen Hwang Elizabeth J Atkinson Kurt Lohman Marilyn C Cornelis Asa Johansson Anke Tönjes Abbas Dehghan Jean-Charles Lambert Elizabeth G Holliday Rossella Sorice Zoltan Kutalik Terho Lehtimäki Tõnu Esko Harshal Deshmukh Sheila Ulivi Audrey Y Chu Federico Murgia Stella Trompet Medea Imboden Stefan Coassin Giorgio Pistis Tamara B Harris Lenore J Launer Thor Aspelund Gudny Eiriksdottir Braxton D Mitchell Eric Boerwinkle Helena Schmidt Margherita Cavalieri Madhumathi Rao Frank Hu Ayse Demirkan Ben A Oostra Mariza de Andrade Stephen T Turner Jingzhong Ding Jeanette S Andrews Barry I Freedman Franco Giulianini Wolfgang Koenig Thomas Illig Christa Meisinger Christian Gieger Lina Zgaga Tatijana Zemunik Mladen Boban Cosetta Minelli Heather E Wheeler Wilmar Igl Ghazal Zaboli Sarah H Wild Alan F Wright Harry Campbell David Ellinghaus Ute Nöthlings Gunnar Jacobs Reiner Biffar Florian Ernst Georg Homuth Heyo K Kroemer Matthias Nauck Sylvia Stracke Uwe Völker Henry Völzke Peter Kovacs Michael Stumvoll Reedik Mägi Albert Hofman Andre G Uitterlinden Fernando Rivadeneira Yurii S Aulchenko Ozren Polasek Nick Hastie Veronique Vitart Catherine Helmer Jie Jin Wang Bénédicte Stengel Daniela Ruggiero Sven Bergmann Mika Kähönen Jorma Viikari Tiit Nikopensius Michael Province Shamika Ketkar Helen Colhoun Alex Doney Antonietta Robino Bernhard K Krämer Laura Portas Ian Ford Brendan M Buckley Martin Adam Gian-Andri Thun Bernhard Paulweber Margot Haun Cinzia Sala Paul Mitchell Marina Ciullo Stuart K Kim Peter Vollenweider Olli Raitakari Andres Metspalu Colin Palmer Paolo Gasparini Mario Pirastu J Wouter Jukema Nicole M Probst-Hensch Florian Kronenberg Daniela Toniolo Vilmundur Gudnason Alan R Shuldiner Josef Coresh Reinhold Schmidt Luigi Ferrucci David S Siscovick Cornelia M van Duijn Ingrid B Borecki Sharon L R Kardia Yongmei Liu Gary C Curhan Igor Rudan Ulf Gyllensten James F Wilson Andre Franke Peter P Pramstaller Rainer Rettig Inga Prokopenko Jacqueline Witteman Caroline Hayward Paul M Ridker Afshin Parsa Murielle Bochud Iris M Heid W H Linda Kao Caroline S Fox Anna Köttgen

Hum Mol Genet 2012 Dec 8;21(24):5329-43. Epub 2012 Sep 8.

Division of Preventive Medicine, Brigham and Women's Hospital, Boston, MA 02215, USA.

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http://dx.doi.org/10.1093/hmg/dds369DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3607468PMC
December 2012

Genome-wide association and functional follow-up reveals new loci for kidney function.

Authors:
Cristian Pattaro Anna Köttgen Alexander Teumer Maija Garnaas Carsten A Böger Christian Fuchsberger Matthias Olden Ming-Huei Chen Adrienne Tin Daniel Taliun Man Li Xiaoyi Gao Mathias Gorski Qiong Yang Claudia Hundertmark Meredith C Foster Conall M O'Seaghdha Nicole Glazer Aaron Isaacs Ching-Ti Liu Albert V Smith Jeffrey R O'Connell Maksim Struchalin Toshiko Tanaka Guo Li Andrew D Johnson Hinco J Gierman Mary Feitosa Shih-Jen Hwang Elizabeth J Atkinson Kurt Lohman Marilyn C Cornelis Åsa Johansson Anke Tönjes Abbas Dehghan Vincent Chouraki Elizabeth G Holliday Rossella Sorice Zoltan Kutalik Terho Lehtimäki Tõnu Esko Harshal Deshmukh Sheila Ulivi Audrey Y Chu Federico Murgia Stella Trompet Medea Imboden Barbara Kollerits Giorgio Pistis Tamara B Harris Lenore J Launer Thor Aspelund Gudny Eiriksdottir Braxton D Mitchell Eric Boerwinkle Helena Schmidt Margherita Cavalieri Madhumathi Rao Frank B Hu Ayse Demirkan Ben A Oostra Mariza de Andrade Stephen T Turner Jingzhong Ding Jeanette S Andrews Barry I Freedman Wolfgang Koenig Thomas Illig Angela Döring H-Erich Wichmann Ivana Kolcic Tatijana Zemunik Mladen Boban Cosetta Minelli Heather E Wheeler Wilmar Igl Ghazal Zaboli Sarah H Wild Alan F Wright Harry Campbell David Ellinghaus Ute Nöthlings Gunnar Jacobs Reiner Biffar Karlhans Endlich Florian Ernst Georg Homuth Heyo K Kroemer Matthias Nauck Sylvia Stracke Uwe Völker Henry Völzke Peter Kovacs Michael Stumvoll Reedik Mägi Albert Hofman Andre G Uitterlinden Fernando Rivadeneira Yurii S Aulchenko Ozren Polasek Nick Hastie Veronique Vitart Catherine Helmer Jie Jin Wang Daniela Ruggiero Sven Bergmann Mika Kähönen Jorma Viikari Tiit Nikopensius Michael Province Shamika Ketkar Helen Colhoun Alex Doney Antonietta Robino Franco Giulianini Bernhard K Krämer Laura Portas Ian Ford Brendan M Buckley Martin Adam Gian-Andri Thun Bernhard Paulweber Margot Haun Cinzia Sala Marie Metzger Paul Mitchell Marina Ciullo Stuart K Kim Peter Vollenweider Olli Raitakari Andres Metspalu Colin Palmer Paolo Gasparini Mario Pirastu J Wouter Jukema Nicole M Probst-Hensch Florian Kronenberg Daniela Toniolo Vilmundur Gudnason Alan R Shuldiner Josef Coresh Reinhold Schmidt Luigi Ferrucci David S Siscovick Cornelia M van Duijn Ingrid Borecki Sharon L R Kardia Yongmei Liu Gary C Curhan Igor Rudan Ulf Gyllensten James F Wilson Andre Franke Peter P Pramstaller Rainer Rettig Inga Prokopenko Jacqueline C M Witteman Caroline Hayward Paul Ridker Afshin Parsa Murielle Bochud Iris M Heid Wolfram Goessling Daniel I Chasman W H Linda Kao Caroline S Fox

PLoS Genet 2012 29;8(3):e1002584. Epub 2012 Mar 29.

Institute of Genetic Medicine, European Academy of Bozen/Bolzano (EURAC) and Affiliated Institute of the University of Lübeck, Bolzano, Italy.

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http://dx.doi.org/10.1371/journal.pgen.1002584DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3315455PMC
September 2012

An engineering approach to extending lifespan in C. elegans.

PLoS Genet 2012 21;8(6):e1002780. Epub 2012 Jun 21.

Departments of Genetics and Developmental Biology, Stanford University Medical Center, Stanford, California, United States of America.

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http://dx.doi.org/10.1371/journal.pgen.1002780DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3380832PMC
September 2012

Response to Tonsaker et al.

Mech Ageing Dev 2012 Jan 1;133(1):54-6; discussion 57-8. Epub 2011 Dec 1.

Dept. of Developmental Biology, Stanford University School of Medicine, Stanford, CA 94305, United States.

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http://dx.doi.org/10.1016/j.mad.2011.11.006DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4709568PMC
January 2012

Seeing elegance in gene regulatory networks of the worm.

Curr Opin Genet Dev 2011 Dec 29;21(6):776-86. Epub 2011 Sep 29.

Department of Genetics, Stanford University Medical Center, Stanford, CA, USA.

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http://dx.doi.org/10.1016/j.gde.2011.08.007DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3224770PMC
December 2011

The early bird catches the worm: new technologies for the Caenorhabditis elegans toolkit.

Nat Rev Genet 2011 Oct 4;12(11):793-801. Epub 2011 Oct 4.

Cancer Biology Program and Department of Developmental Biology, Stanford University School of Medicine, Stanford, California 94305, USA.

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http://dx.doi.org/10.1038/nrg3050DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4719766PMC
October 2011

Variable pathogenicity determines individual lifespan in Caenorhabditis elegans.

PLoS Genet 2011 Apr 14;7(4):e1002047. Epub 2011 Apr 14.

Department of Developmental Biology, Stanford University Medical Center, Stanford, California, United States of America.

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http://dx.doi.org/10.1371/journal.pgen.1002047DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3077391PMC
April 2011

Genetics and genomics of human ageing.

Philos Trans R Soc Lond B Biol Sci 2011 Jan;366(1561):43-50

Department of Genetics, Stanford University Medical Center, Stanford, CA 94305, USA.

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http://rstb.royalsocietypublishing.org/cgi/doi/10.1098/rstb.
Publisher Site
http://dx.doi.org/10.1098/rstb.2010.0259DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3001305PMC
January 2011

Integrative analysis of the Caenorhabditis elegans genome by the modENCODE project.

Authors:
Mark B Gerstein Zhi John Lu Eric L Van Nostrand Chao Cheng Bradley I Arshinoff Tao Liu Kevin Y Yip Rebecca Robilotto Andreas Rechtsteiner Kohta Ikegami Pedro Alves Aurelien Chateigner Marc Perry Mitzi Morris Raymond K Auerbach Xin Feng Jing Leng Anne Vielle Wei Niu Kahn Rhrissorrakrai Ashish Agarwal Roger P Alexander Galt Barber Cathleen M Brdlik Jennifer Brennan Jeremy Jean Brouillet Adrian Carr Ming-Sin Cheung Hiram Clawson Sergio Contrino Luke O Dannenberg Abby F Dernburg Arshad Desai Lindsay Dick Andréa C Dosé Jiang Du Thea Egelhofer Sevinc Ercan Ghia Euskirchen Brent Ewing Elise A Feingold Reto Gassmann Peter J Good Phil Green Francois Gullier Michelle Gutwein Mark S Guyer Lukas Habegger Ting Han Jorja G Henikoff Stefan R Henz Angie Hinrichs Heather Holster Tony Hyman A Leo Iniguez Judith Janette Morten Jensen Masaomi Kato W James Kent Ellen Kephart Vishal Khivansara Ekta Khurana John K Kim Paulina Kolasinska-Zwierz Eric C Lai Isabel Latorre Amber Leahey Suzanna Lewis Paul Lloyd Lucas Lochovsky Rebecca F Lowdon Yaniv Lubling Rachel Lyne Michael MacCoss Sebastian D Mackowiak Marco Mangone Sheldon McKay Desirea Mecenas Gennifer Merrihew David M Miller Andrew Muroyama John I Murray Siew-Loon Ooi Hoang Pham Taryn Phippen Elicia A Preston Nikolaus Rajewsky Gunnar Rätsch Heidi Rosenbaum Joel Rozowsky Kim Rutherford Peter Ruzanov Mihail Sarov Rajkumar Sasidharan Andrea Sboner Paul Scheid Eran Segal Hyunjin Shin Chong Shou Frank J Slack Cindie Slightam Richard Smith William C Spencer E O Stinson Scott Taing Teruaki Takasaki Dionne Vafeados Ksenia Voronina Guilin Wang Nicole L Washington Christina M Whittle Beijing Wu Koon-Kiu Yan Georg Zeller Zheng Zha Mei Zhong Xingliang Zhou Julie Ahringer Susan Strome Kristin C Gunsalus Gos Micklem X Shirley Liu Valerie Reinke Stuart K Kim LaDeana W Hillier Steven Henikoff Fabio Piano Michael Snyder Lincoln Stein Jason D Lieb Robert H Waterston

Science 2010 Dec 22;330(6012):1775-87. Epub 2010 Dec 22.

Program in Computational Biology and Bioinformatics, Yale University, Bass 432, 266 Whitney Avenue, New Haven, CT 06520, USA.

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http://dx.doi.org/10.1126/science.1196914DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3142569PMC
December 2010

Aging mice show a decreasing correlation of gene expression within genetic modules.

PLoS Genet 2009 Dec 18;5(12):e1000776. Epub 2009 Dec 18.

Biomedical Informatics, Stanford University, Stanford, California, United States of America.

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http://dx.doi.org/10.1371/journal.pgen.1000776DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2788246PMC
December 2009

A 3D digital atlas of C. elegans and its application to single-cell analyses.

Nat Methods 2009 Sep 16;6(9):667-72. Epub 2009 Aug 16.

Janelia Farm Research Campus, Howard Hughes Medical Institute, Ashburn, Virginia, USA.

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http://dx.doi.org/10.1038/nmeth.1366DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2882208PMC
September 2009

Properties of balanced permutations.

J Comput Biol 2009 Apr;16(4):625-38

Biomedical Informatics, Stanford University, Stanford, California 94305, USA.

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http://dx.doi.org/10.1089/cmb.2008.0144DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3148117PMC
April 2009

An elt-3/elt-5/elt-6 GATA transcription circuit guides aging in C. elegans.

Cell 2008 Jul;134(2):291-303

Department of Developmental Biology, Stanford University Medical Center, Stanford, CA 94305, USA.

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http://dx.doi.org/10.1016/j.cell.2008.05.044DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4719053PMC
July 2008

Straightening Caenorhabditis elegans images.

Bioinformatics 2008 Jan 19;24(2):234-42. Epub 2007 Nov 19.

Janelia Farm Research Campus, Howard Hughes Medical Institute, Ashburn, VA 20147, USA.

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http://dx.doi.org/10.1093/bioinformatics/btm569DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2940239PMC
January 2008

Transcriptional instability is not a universal attribute of aging.

Aging Cell 2007 Dec 8;6(6):775-82. Epub 2007 Oct 8.

Division of Biology, California Institute of Technology, Pasadena, CA 91125, USA.

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December 2007

Cell biology. Proteins that promote long life.

Authors:
Stuart K Kim

Science 2007 Aug;317(5838):603-4

Departments of Developmental Biology and Genetics, Stanford University Medical Center, Stanford, CA 94305-5329, USA.

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http://dx.doi.org/10.1126/science.1146805DOI Listing
August 2007

Systems biology of aging in four species.

Curr Opin Biotechnol 2007 Aug 2;18(4):355-9. Epub 2007 Aug 2.

Department of Developmental Biology, Stanford University Medical Center, Stanford, CA 94305, USA.

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http://dx.doi.org/10.1016/j.copbio.2007.07.004DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3224768PMC
August 2007

Common aging pathways in worms, flies, mice and humans.

Authors:
Stuart K Kim

J Exp Biol 2007 May;210(Pt 9):1607-12

Department of Developmental Biology and Genetics, Stanford University Medical Center, Stanford, CA 94305-5329, USA.

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http://dx.doi.org/10.1242/jeb.004887DOI Listing
May 2007

Transcriptional profiling of aging in human muscle reveals a common aging signature.

PLoS Genet 2006 Jul 9;2(7):e115. Epub 2006 Jun 9.

Department of Developmental Biology, Stanford University Medical Center, Stanford, California, USA.

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http://dx.doi.org/10.1371/journal.pgen.0020115.eorDOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC1513263PMC
July 2006

Chromosomal clustering and GATA transcriptional regulation of intestine-expressed genes in C. elegans.

Development 2006 Jan 14;133(2):287-95. Epub 2005 Dec 14.

Department of Genetics, Stanford University, Stanford, CA 94305, USA.

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http://dx.doi.org/10.1242/dev.02185DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4719054PMC
January 2006

A role for SIR-2.1 regulation of ER stress response genes in determining C. elegans life span.

Dev Cell 2005 Nov;9(5):605-15

Department of Biology, Massachusetts Institute of Technology, Cambridge, Massachusetts 02139, USA.

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http://dx.doi.org/10.1016/j.devcel.2005.09.017DOI Listing
November 2005

Roles of the HIF-1 hypoxia-inducible factor during hypoxia response in Caenorhabditis elegans.

J Biol Chem 2005 May 21;280(21):20580-8. Epub 2005 Mar 21.

Department of Genetics, Development, and Cell Biology, Iowa State University, Ames 50011, USA.

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http://dx.doi.org/10.1074/jbc.M501894200DOI Listing
May 2005

The transcriptional consequences of mutation and natural selection in Caenorhabditis elegans.

Nat Genet 2005 May 24;37(5):544-8. Epub 2005 Apr 24.

Department of Biology, Indiana University, Bloomington, Indiana 47405, USA.

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http://dx.doi.org/10.1038/ng1554DOI Listing
May 2005

A gene-coexpression network for global discovery of conserved genetic modules.

Science 2003 Oct 21;302(5643):249-55. Epub 2003 Aug 21.

Stanford Medical Informatics, 251 Campus Drive, Medical School Office Building X-215, Stanford, CA 94305-5329, USA.

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http://dx.doi.org/10.1126/science.1087447DOI Listing
October 2003

Coordinate activation of maternal protein degradation during the egg-to-embryo transition in C. elegans.

Dev Cell 2003 Sep;5(3):451-62

Department of Molecular Biology and Genetics, Johns Hopkins University School of Medicine, Baltimore, MD 21205, USA.

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September 2003

The modular era of functional genomics.

Genome Biol 2003 14;4(5):317. Epub 2003 Apr 14.

Computer Science Department, Stanford University, Stanford, CA 94305, USA.

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http://www.ncbi.nlm.nih.gov/pmc/articles/PMC156581PMC
http://dx.doi.org/10.1186/gb-2003-4-5-317DOI Listing
July 2003

Global analysis of dauer gene expression in Caenorhabditis elegans.

Development 2003 Apr;130(8):1621-34

Department of Developmental Biology, Stanford University, Stanford, CA 94305, USA.

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http://dx.doi.org/10.1242/dev.00363DOI Listing
April 2003

Gene clustering based on RNAi phenotypes of ovary-enriched genes in C. elegans.

Curr Biol 2002 Nov;12(22):1959-64

Department of Molecular Biology and Genetics, Cornell University, Ithaca, NY 14853, USA.

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http://dx.doi.org/10.1016/s0960-9822(02)01301-5DOI Listing
November 2002

Transcriptional profile of aging in C. elegans.

Curr Biol 2002 Sep;12(18):1566-73

Department of Developmental Biology, Stanford University Medical Center, Stanford, CA 94305, USA.

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http://dx.doi.org/10.1016/s0960-9822(02)01146-6DOI Listing
September 2002

Chromosomal clustering of muscle-expressed genes in Caenorhabditis elegans.

Nature 2002 Aug;418(6901):975-9

Department of Developmental Biology, Stanford University Medical Center, California 94305, USA.

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http://dx.doi.org/10.1038/nature01012DOI Listing
August 2002

Downstream targets of let-60 Ras in Caenorhabditis elegans.

Dev Biol 2002 Jul;247(1):127-36

Department of Developmental Biology and Genetics, Stanford University Medical School, California 94305, USA.

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http://dx.doi.org/10.1006/dbio.2002.0692DOI Listing
July 2002

Identification of genes expressed in C. elegans touch receptor neurons.

Nature 2002 Jul;418(6895):331-5

Department of Biological Sciences, Columbia University, New York, New York 10027, USA.

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http://dx.doi.org/10.1038/nature00891DOI Listing
July 2002

A global analysis of Caenorhabditis elegans operons.

Nature 2002 Jun;417(6891):851-4

Department of Biochemistry and Molecular Genetics, University of Colorado School of Medicine, Box B121, 4200 E. 9th Avenue, Denver, Colorado 80262, USA.

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http://dx.doi.org/10.1038/nature00831DOI Listing
June 2002

X-chromosome silencing in the germline of C. elegans.

Development 2002 Jan;129(2):479-92

Biology Department, Emory University, Atlanta, GA 30322, USA.

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January 2002