Stinus Lindgreen

Stinus Lindgreen

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Stinus Lindgreen

Stinus Lindgreen

Publications by authors named "Stinus Lindgreen"

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17Publications

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Above and belowground community strategies respond to different global change drivers.

Sci Rep 2019 Feb 22;9(1):2540. Epub 2019 Feb 22.

School of Biological Sciences, University of Canterbury, Private Bag 4800, Christchurch, 8140, New Zealand.

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http://dx.doi.org/10.1038/s41598-019-39033-4DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6385336PMC
February 2019

Major sulfonate transporter Soa1 in Saccharomyces cerevisiae and considerable substrate diversity in its fungal family.

Nat Commun 2017 02 6;8:14247. Epub 2017 Feb 6.

Laboratory of Molecular Cell Biology, Department of Biology, KU Leuven, Institute of Botany and Microbiology Kasteelpark Arenberg 31, Flanders, B-3001 Leuven-Heverlee, Belgium.

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http://www.nature.com/doifinder/10.1038/ncomms14247
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http://dx.doi.org/10.1038/ncomms14247DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5303821PMC
February 2017

AdapterRemoval v2: rapid adapter trimming, identification, and read merging.

BMC Res Notes 2016 Feb 12;9:88. Epub 2016 Feb 12.

Centre for GeoGenetics, Natural History Museum of Denmark, University of Copenhagen, 1350, Copenhagen, Denmark.

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http://dx.doi.org/10.1186/s13104-016-1900-2DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4751634PMC
February 2016

An evaluation of the accuracy and speed of metagenome analysis tools.

Sci Rep 2016 Jan 18;6:19233. Epub 2016 Jan 18.

Biomolecular Interaction Centre, University of Canterbury, Christchurch, New Zealand.

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http://dx.doi.org/10.1038/srep19233DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4726098PMC
January 2016

SNPest: a probabilistic graphical model for estimating genotypes.

BMC Res Notes 2014 Oct 7;7:698. Epub 2014 Oct 7.

Section for Computational and RNA Biology, Department of Biology, University of Copenhagen, Ole Maaloes Vej, 2200 Copenhagen, Denmark.

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http://dx.doi.org/10.1186/1756-0500-7-698DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4203901PMC
October 2014

Robust identification of noncoding RNA from transcriptomes requires phylogenetically-informed sampling.

PLoS Comput Biol 2014 Oct 30;10(10):e1003907. Epub 2014 Oct 30.

School of Biological Sciences, University of Canterbury, Christchurch, New Zealand; Biomolecular Interaction Centre, University of Canterbury, Christchurch, New Zealand.

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http://dx.doi.org/10.1371/journal.pcbi.1003907DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4214555PMC
October 2014

Adaptable probabilistic mapping of short reads using position specific scoring matrices.

BMC Bioinformatics 2014 Apr 9;15:100. Epub 2014 Apr 9.

Section for Computational and RNA Biology, Department of Biology, University of Copenhagen, Ole Maaloes Vej 5, 2200 Copenhagen, Denmark.

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http://dx.doi.org/10.1186/1471-2105-15-100DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4021105PMC
April 2014

AdapterRemoval: easy cleaning of next-generation sequencing reads.

Authors:
Stinus Lindgreen

BMC Res Notes 2012 Jul 2;5:337. Epub 2012 Jul 2.

Centre for GeoGenetics, Natural History Museum of Denmark, University of Copenhagen, Oster Voldgade 5-7, 1350 Copenhagen K, Denmark.

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http://dx.doi.org/10.1186/1756-0500-5-337DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3532080PMC
July 2012

Improving ancient DNA read mapping against modern reference genomes.

BMC Genomics 2012 May 10;13:178. Epub 2012 May 10.

Centre for GeoGenetics; Natural History Museum of Denmark, University of Copenhagen, 5-7 Øster Voldgade, 1350, Kobenhavns K, Denmark.

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http://dx.doi.org/10.1186/1471-2164-13-178DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3468387PMC
May 2012

Rfam: updates to the RNA families database.

Nucleic Acids Res 2009 Jan 25;37(Database issue):D136-40. Epub 2008 Oct 25.

Wellcome Trust Sanger Institute, Wellcome Trust Genome Campus, Hinxton, CB10 1SA, UK.

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http://dx.doi.org/10.1093/nar/gkn766DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2686503PMC
January 2009

WAR: Webserver for aligning structural RNAs.

Nucleic Acids Res 2008 Jul 20;36(Web Server issue):W79-84. Epub 2008 May 20.

Division of Genetics and Bioinformatics, IBHV, Faculty of Life Sciences, University of Copenhagen, Groennegaardsvej 3, DK-1870 Frederiksberg C, Denmark.

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http://dx.doi.org/10.1093/nar/gkn275DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2447782PMC
July 2008

MASTR: multiple alignment and structure prediction of non-coding RNAs using simulated annealing.

Bioinformatics 2007 Dec 15;23(24):3304-11. Epub 2007 Nov 15.

Bioinformatics Centre, Department of Molecular Biology, University of Copenhagen, Ole Maaloes Vej 5, 2200 Copenhagen N, Denmark.

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http://dx.doi.org/10.1093/bioinformatics/btm525DOI Listing
December 2007