Steven E Massey

Steven E Massey

UNVERIFIED PROFILE

Are you Steven E Massey?   Register this Author

Register author
Steven E Massey

Steven E Massey

Publications by authors named "Steven E Massey"

Are you Steven E Massey?   Register this Author

37Publications

297Reads

34Profile Views

On the Origin of Biomolecular Networks.

Front Genet 2019 10;10:240. Epub 2019 Apr 10.

Departments of Computer Science, Mathematics and Cell Biology, Courant Institute and NYU School of Medicine, New York University, New York City, NY, United States.

View Article

Download full-text PDF

Source
http://dx.doi.org/10.3389/fgene.2019.00240DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6467946PMC
April 2019

Genetic Code Error Minimization as a Non-Adaptive But Beneficial Trait.

Authors:
Steven E Massey

J Mol Evol 2019 Jan 2;87(1):4-6. Epub 2019 Jan 2.

Biology Department, University of Puerto Rico - Rio Piedras, San Juan, PR, 00931, USA.

View Article

Download full-text PDF

Source
http://dx.doi.org/10.1007/s00239-018-9880-6DOI Listing
January 2019

Origin of biomolecular games: deception and molecular evolution.

J R Soc Interface 2018 09;15(146)

Courant Institute, New York University, NY, USA.

View Article

Download full-text PDF

Source
http://dx.doi.org/10.1098/rsif.2018.0429DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6170767PMC
September 2018

The identities of stop codon reassignments support ancestral tRNA stop codon decoding activity as a facilitator of gene duplication and evolution of novel function.

Authors:
Steven E Massey

Gene 2017 Jul 28;619:37-43. Epub 2017 Mar 28.

Biology Department, PO Box 23360, University of Puerto Rico - Rio Piedras, San Juan, PR 00931, USA. Electronic address:

View Article

Download full-text PDF

Source
https://linkinghub.elsevier.com/retrieve/pii/S03781119173021
Publisher Site
http://dx.doi.org/10.1016/j.gene.2017.03.036DOI Listing
July 2017

Strong Amerindian Mitonuclear Discordance in Puerto Rican Genomes Suggests Amerindian Mitochondrial Benefit.

Authors:
Steven E Massey

Ann Hum Genet 2017 Mar;81(2):59-77

Biology Department, University of Puerto Rico - Rio Piedras, PO Box 23360, San Juan, Puerto Rico, 00931.

View Article

Download full-text PDF

Source
http://dx.doi.org/10.1111/ahg.12185DOI Listing
March 2017

Reduced Diversity in the Bacteriome of the Phytophagous Mite Brevipalpus yothersi (Acari: Tenuipalpidae).

Insects 2016 Dec 20;7(4). Epub 2016 Dec 20.

Center for Excellence in Quarantine and Invasive Species, Agricultural Experimental Station-Río Piedras, Crops and Agro-Environmental Sciences Department, University of Puerto Rico-Mayaguez, 1193 Calle Guayacán, San Juan, PR 00926-1118, USA.

View Article

Download full-text PDF

Source
http://dx.doi.org/10.3390/insects7040080DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5198228PMC
December 2016

Social network analysis of the biblical Moses.

Authors:
Steven E Massey

Appl Netw Sci 2016 14;1(1):13. Epub 2016 Nov 14.

Department of Biology, University of Puerto Rico - Rio Piedras, San Juan, PR 00931 USA.

View Article

Download full-text PDF

Source
http://dx.doi.org/10.1007/s41109-016-0012-1DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6245130PMC
November 2016

The neutral emergence of error minimized genetic codes superior to the standard genetic code.

Authors:
Steven E Massey

J Theor Biol 2016 11 17;408:237-42. Epub 2016 Aug 17.

Department of Biology, University of Puerto Rico - Rio Piedras, San Juan, PR 00931, USA. Electronic address:

View Article

Download full-text PDF

Source
http://dx.doi.org/10.1016/j.jtbi.2016.08.022DOI Listing
November 2016

Comparative Microbial Genomics and Forensics.

Authors:
Steven E Massey

Microbiol Spectr 2016 08;4(4)

View Article

Download full-text PDF

Source
http://dx.doi.org/10.1128/microbiolspec.EMF-0001-2013DOI Listing
August 2016

DNA Repair Is Associated with Information Content in Bacteria, Archaea, and DNA Viruses.

J Hered 2015 Sep-Oct;106(5):644-59. Epub 2015 Aug 29.

From the Department of Biology, University of Puerto Rico-Rio Piedras, PO Box 23360, San Juan 00931, Puerto Rico (Acosta, Carela, Garcia-Gonzalez, Gines, Vicens, Cruet, and Massey).

View Article

Download full-text PDF

Source
http://jhered.oxfordjournals.org/content/early/2015/08/28/jh
Web Search
http://jhered.oxfordjournals.org/lookup/doi/10.1093/jhered/e
Publisher Site
http://dx.doi.org/10.1093/jhered/esv055DOI Listing
January 2016

HIV gp120 sequence variability associated with HAND in Hispanic Women.

J Virol Antivir Res 2015;4(3). Epub 2015 Oct 6.

Department of Microbiology and Medical Zoology, University of Puerto Rico Medical Sciences Campus, San Juan, PR.

View Article

Download full-text PDF

Source
http://dx.doi.org/10.4172/2324-8955.1000143DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4922650PMC
October 2015

DNA/RNA transverse current sequencing: intrinsic structural noise from neighboring bases.

Front Genet 2015 19;6:213. Epub 2015 Jun 19.

Department of Physics, University of Puerto Rico San Juan, PR, USA ; Department of Physics, University of Nebraska Lincoln, NE, USA ; Université Grenoble Alpes/CNRS/CEA, INAC-SPINTEC Grenoble, France.

View Article

Download full-text PDF

Source
http://dx.doi.org/10.3389/fgene.2015.00213DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4473640PMC
July 2015

Genetic code evolution reveals the neutral emergence of mutational robustness, and information as an evolutionary constraint.

Authors:
Steven E Massey

Life (Basel) 2015 Apr 24;5(2):1301-32. Epub 2015 Apr 24.

Biology Department, PO Box 23360, University of Puerto Rico-Rio Piedras, San Juan, PR 00931, USA.

View Article

Download full-text PDF

Source
http://dx.doi.org/10.3390/life5021301DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4500140PMC
April 2015

A nonadaptive origin of a beneficial trait: in silico selection for free energy of folding leads to the neutral emergence of mutational robustness in single domain proteins.

J Mol Evol 2014 Feb 21;78(2):130-9. Epub 2013 Dec 21.

Physics Department, University of Puerto Rico - Rio Piedras, San Juan, PR, USA.

View Article

Download full-text PDF

Source
http://dx.doi.org/10.1007/s00239-013-9606-8DOI Listing
February 2014

What can information-asymmetric games tell us about the context of Crick's 'frozen accident'?

J R Soc Interface 2013 Nov 28;10(88):20130614. Epub 2013 Aug 28.

Courant Institute of Mathematical Sciences, New York University, New York, NY 10003, USA.

View Article

Download full-text PDF

Source
http://dx.doi.org/10.1098/rsif.2013.0614DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3785830PMC
November 2013

Sociomicrobiome of wood decay in a tropical rain forest: unraveling complexity.

Springerplus 2013 4;2:435. Epub 2013 Sep 4.

Biology Department, University of Puerto Rico, San Juan, PR 00932 USA.

View Article

Download full-text PDF

Source
http://dx.doi.org/10.1186/2193-1801-2-435DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3776085PMC
September 2013

Proteome size as the major factor determining mutation rates.

Authors:
Steven E Massey

Proc Natl Acad Sci U S A 2013 Mar 13;110(10):E858-9. Epub 2013 Feb 13.

View Article

Download full-text PDF

Source
http://dx.doi.org/10.1073/pnas.1219306110DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3593906PMC
March 2013

The Presence of the DNA Repair Genes mutM, mutY, mutL, and mutS is Related to Proteome Size in Bacterial Genomes.

Front Genet 2012 28;3. Epub 2012 Feb 28.

Biology Department, University of Puerto Rico - Rio Piedras San Juan, Puerto Rico.

View Article

Download full-text PDF

Source
http://dx.doi.org/10.3389/fgene.2012.00003DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3288817PMC
October 2012

Positive selection on a bacterial oncoprotein associated with gastric cancer.

Gut Pathog 2011 Nov 11;3:18. Epub 2011 Nov 11.

Biology Department, University of Puerto Rico - Rio Piedras, PO Box 23360, San Juan, Puerto Rico, USA 00931.

View Article

Download full-text PDF

Source
http://dx.doi.org/10.1186/1757-4749-3-18DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3228766PMC
November 2011

ScanMoment: a web server for combinatorial analysis of basic residues in nucleic acid binding sites.

Authors:
Steven E Massey

Bioinformation 2009 27;3(7):293-5. Epub 2009 Feb 27.

Department of Biology, University of Puerto Rico - Rio Piedras, PO Box 23360, San Juan, Puerto Rico 00931.

View Article

Download full-text PDF

Source
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2655046PMC
http://dx.doi.org/10.6026/97320630003293DOI Listing
June 2010

Lineage-specific differences in the amino acid substitution process.

J Mol Biol 2010 Mar 15;396(5):1410-21. Epub 2010 Jan 15.

Department of Statistics, University of Wyoming, Laramie, WY 82071, USA.

View Article

Download full-text PDF

Source
http://dx.doi.org/10.1016/j.jmb.2009.11.075DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2850115PMC
March 2010

Searching of code space for an error-minimized genetic code via codon capture leads to failure, or requires at least 20 improving codon reassignments via the ambiguous intermediate mechanism.

Authors:
Steven E Massey

J Mol Evol 2010 Jan 28;70(1):106-15. Epub 2010 Jan 28.

Department of Biology, University of Puerto Rico-Rio Piedras, San Juan, PR 00931, USA.

View Article

Download full-text PDF

Source
http://dx.doi.org/10.1007/s00239-009-9313-7DOI Listing
January 2010

Keeping the blood flowing-plasminogen activator genes and feeding behavior in vampire bats.

Naturwissenschaften 2009 Jan 13;96(1):39-47. Epub 2008 Sep 13.

Department of Molecular Biology, University of Wyoming, Laramie, WY, 82071, USA.

View Article

Download full-text PDF

Source
http://dx.doi.org/10.1007/s00114-008-0446-0DOI Listing
January 2009

The proteomic constraint and its role in molecular evolution.

Authors:
Steven E Massey

Mol Biol Evol 2008 Dec 22;25(12):2557-65. Epub 2008 Sep 22.

Molecular Biology Department, University of Wyoming, USA.

View Article

Download full-text PDF

Source
http://dx.doi.org/10.1093/molbev/msn210DOI Listing
December 2008

A neutral origin for error minimization in the genetic code.

Authors:
Steven E Massey

J Mol Evol 2008 Nov 15;67(5):510-6. Epub 2008 Oct 15.

Department of Molecular Biology, College of Agriculture, University of Wyoming, 1000 East University Avenue, Laramie, WY 82071, USA.

View Article

Download full-text PDF

Source
http://dx.doi.org/10.1007/s00239-008-9167-4DOI Listing
November 2008

Characterizing positive and negative selection and their phylogenetic effects.

Gene 2008 Jul 8;418(1-2):22-6. Epub 2008 Apr 8.

Department of Molecular Biology, University of Wyoming, Laramie, WY 82071, USA.

View Article

Download full-text PDF

Source
http://dx.doi.org/10.1016/j.gene.2008.03.017DOI Listing
July 2008

A comparative genomics analysis of codon reassignments reveals a link with mitochondrial proteome size and a mechanism of genetic code change via suppressor tRNAs.

J Mol Evol 2007 Apr 27;64(4):399-410. Epub 2007 Mar 27.

Department of Biology, University of South Florida, 4202 East Fowler Avenue, Tampa, FL 33620, USA.

View Article

Download full-text PDF

Source
http://dx.doi.org/10.1007/s00239-005-0260-7DOI Listing
April 2007

Basic faced alpha-helices are widespread in the peptide extensions of the eukaryotic aminoacyl-tRNA synthetases.

Authors:
Steven E Massey

In Silico Biol 2006 ;6(4):259-73

Biology Department, University of South Florida, Tampa, FL, USA.

View Article

Download full-text PDF

Source
February 2007

A sequential "2-1-3" model of genetic code evolution that explains codon constraints.

Authors:
Steven E Massey

J Mol Evol 2006 Jun 11;62(6):809-10. Epub 2006 Apr 11.

View Article

Download full-text PDF

Source
http://dx.doi.org/10.1007/s00239-005-0222-0DOI Listing
June 2006

Driving change: the evolution of alternative genetic codes.

Trends Genet 2004 Feb;20(2):95-102

Centre for Cell Biology, Department of Biology, University of Aveiro, 3810-193 Aveiro, Portugal.

View Article

Download full-text PDF

Source
http://dx.doi.org/10.1016/j.tig.2003.12.009DOI Listing
February 2004

Horizontal transfer of functional nuclear genes between multicellular organisms.

Biol Bull 2003 Jun;204(3):237-40

Department of Biology, University of South Florida, SCA 110, 4202 E. Fowler Ave., Tampa 33620, USA.

View Article

Download full-text PDF

Source
http://dx.doi.org/10.2307/1543594DOI Listing
June 2003