Steve Ferriera

Steve Ferriera

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Steve Ferriera

Steve Ferriera

Publications by authors named "Steve Ferriera"

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Draft genome sequence of the chemolithoheterotrophic, halophilic methylotroph Methylophaga thiooxydans DMS010.

J Bacteriol 2011 Jun 8;193(12):3154-5. Epub 2011 Apr 8.

School of Life Sciences, University of Warwick, Gibbet Hill Road, Coventry, CV4 7AL, UK.

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http://dx.doi.org/10.1128/JB.00388-11DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3133190PMC
June 2011

Genome sequence of the Marine Janibacter Sp. Strain HTCC2649.

J Bacteriol 2011 Jan 12;193(2):584-5. Epub 2010 Nov 12.

Department of Microbiology, Oregon State University, Corvallis, OR 97331, USA.

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http://dx.doi.org/10.1128/JB.01298-10DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3019837PMC
January 2011

Genome sequence of the oligotrophic marine Gammaproteobacterium HTCC2143, isolated from the Oregon Coast.

J Bacteriol 2010 Sep 2;192(17):4530-1. Epub 2010 Jul 2.

Division of Biology and Ocean Sciences, Inha University, Incheon, Republic of Korea.

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http://dx.doi.org/10.1128/JB.00683-10DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2937397PMC
September 2010

Complete genome sequence of Croceibacter atlanticus HTCC2559T.

J Bacteriol 2010 Sep 16;192(18):4796-7. Epub 2010 Jul 16.

Division of Biology and Ocean Sciences, Inha University, Incheon 402-751, Republic of Korea.

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http://dx.doi.org/10.1128/JB.00733-10DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2937408PMC
September 2010

Genome sequence of the novel marine member of the Gammaproteobacteria strain HTCC5015.

J Bacteriol 2010 Jul 14;192(14):3838-9. Epub 2010 May 14.

Department of Microbiology, Oregon State University, Corvallis, OR 97331, USA.

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http://dx.doi.org/10.1128/JB.00510-10DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2897356PMC
July 2010

Genome sequences of strains HTCC2148 and HTCC2080, belonging to the OM60/NOR5 clade of the Gammaproteobacteria.

J Bacteriol 2010 Jul 14;192(14):3842-3. Epub 2010 May 14.

Department of Microbiology, Oregon State University, Corvallis, OR 97331, USA.

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http://dx.doi.org/10.1128/JB.00511-10DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2897341PMC
July 2010

A catalog of reference genomes from the human microbiome.

Science 2010 May;328(5981):994-9

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http://dx.doi.org/10.1126/science.1183605DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2940224PMC
May 2010

Complete genome sequence of Robiginitalea biformata HTCC2501.

J Bacteriol 2009 Nov 18;191(22):7144-5. Epub 2009 Sep 18.

Division of Biology and Ocean Sciences, Inha University, Incheon 402-751, Republic of Korea.

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http://dx.doi.org/10.1128/JB.01191-09DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2772462PMC
November 2009

Complete genome sequence of Erythrobacter litoralis HTCC2594.

J Bacteriol 2009 Apr 23;191(7):2419-20. Epub 2009 Jan 23.

Inha University, Incheon, Republic of Korea.

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http://dx.doi.org/10.1128/JB.00026-09DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2655494PMC
April 2009

Comparative genomics of two ecotypes of the marine planktonic copiotroph Alteromonas macleodii suggests alternative lifestyles associated with different kinds of particulate organic matter.

ISME J 2008 Dec 31;2(12):1194-212. Epub 2008 Jul 31.

Evolutionary Genomics Group, Departamento Producción Vegetal y Microbiología, Universidad Miguel Hernández, San Juan de Alicante, Alicante, Spain.

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http://dx.doi.org/10.1038/ismej.2008.74DOI Listing
December 2008

Novel computational methods for increasing PCR primer design effectiveness in directed sequencing.

BMC Bioinformatics 2008 Apr 11;9:191. Epub 2008 Apr 11.

The J, Craig Venter Institute, 9704 Medical Center Drive, Rockville, MD 20850, USA.

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http://dx.doi.org/10.1186/1471-2105-9-191DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2396641PMC
April 2008

Characterization of a marine gammaproteobacterium capable of aerobic anoxygenic photosynthesis.

Proc Natl Acad Sci U S A 2007 Feb 13;104(8):2891-6. Epub 2007 Feb 13.

Max Planck Institute for Marine Microbiology, Celsiusstrasse 1, D-28359 Bremen, Germany.

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http://dx.doi.org/10.1073/pnas.0608046104DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC1815277PMC
February 2007

Genome sequence of the Brown Norway rat yields insights into mammalian evolution.

Authors:
Richard A Gibbs George M Weinstock Michael L Metzker Donna M Muzny Erica J Sodergren Steven Scherer Graham Scott David Steffen Kim C Worley Paula E Burch Geoffrey Okwuonu Sandra Hines Lora Lewis Christine DeRamo Oliver Delgado Shannon Dugan-Rocha George Miner Margaret Morgan Alicia Hawes Rachel Gill Celera Robert A Holt Mark D Adams Peter G Amanatides Holly Baden-Tillson Mary Barnstead Soo Chin Cheryl A Evans Steve Ferriera Carl Fosler Anna Glodek Zhiping Gu Don Jennings Cheryl L Kraft Trixie Nguyen Cynthia M Pfannkoch Cynthia Sitter Granger G Sutton J Craig Venter Trevor Woodage Douglas Smith Hong-Mei Lee Erik Gustafson Patrick Cahill Arnold Kana Lynn Doucette-Stamm Keith Weinstock Kim Fechtel Robert B Weiss Diane M Dunn Eric D Green Robert W Blakesley Gerard G Bouffard Pieter J De Jong Kazutoyo Osoegawa Baoli Zhu Marco Marra Jacqueline Schein Ian Bosdet Chris Fjell Steven Jones Martin Krzywinski Carrie Mathewson Asim Siddiqui Natasja Wye John McPherson Shaying Zhao Claire M Fraser Jyoti Shetty Sofiya Shatsman Keita Geer Yixin Chen Sofyia Abramzon William C Nierman Paul H Havlak Rui Chen K James Durbin Amy Egan Yanru Ren Xing-Zhi Song Bingshan Li Yue Liu Xiang Qin Simon Cawley Kim C Worley A J Cooney Lisa M D'Souza Kirt Martin Jia Qian Wu Manuel L Gonzalez-Garay Andrew R Jackson Kenneth J Kalafus Michael P McLeod Aleksandar Milosavljevic Davinder Virk Andrei Volkov David A Wheeler Zhengdong Zhang Jeffrey A Bailey Evan E Eichler Eray Tuzun Ewan Birney Emmanuel Mongin Abel Ureta-Vidal Cara Woodwark Evgeny Zdobnov Peer Bork Mikita Suyama David Torrents Marina Alexandersson Barbara J Trask Janet M Young Hui Huang Huajun Wang Heming Xing Sue Daniels Darryl Gietzen Jeanette Schmidt Kristian Stevens Ursula Vitt Jim Wingrove Francisco Camara M Mar Albà Josep F Abril Roderic Guigo Arian Smit Inna Dubchak Edward M Rubin Olivier Couronne Alexander Poliakov Norbert Hübner Detlev Ganten Claudia Goesele Oliver Hummel Thomas Kreitler Young-Ae Lee Jan Monti Herbert Schulz Heike Zimdahl Heinz Himmelbauer Hans Lehrach Howard J Jacob Susan Bromberg Jo Gullings-Handley Michael I Jensen-Seaman Anne E Kwitek Jozef Lazar Dean Pasko Peter J Tonellato Simon Twigger Chris P Ponting Jose M Duarte Stephen Rice Leo Goodstadt Scott A Beatson Richard D Emes Eitan E Winter Caleb Webber Petra Brandt Gerald Nyakatura Margaret Adetobi Francesca Chiaromonte Laura Elnitski Pallavi Eswara Ross C Hardison Minmei Hou Diana Kolbe Kateryna Makova Webb Miller Anton Nekrutenko Cathy Riemer Scott Schwartz James Taylor Shan Yang Yi Zhang Klaus Lindpaintner T Dan Andrews Mario Caccamo Michele Clamp Laura Clarke Valerie Curwen Richard Durbin Eduardo Eyras Stephen M Searle Gregory M Cooper Serafim Batzoglou Michael Brudno Arend Sidow Eric A Stone J Craig Venter Bret A Payseur Guillaume Bourque Carlos López-Otín Xose S Puente Kushal Chakrabarti Sourav Chatterji Colin Dewey Lior Pachter Nicolas Bray Von Bing Yap Anat Caspi Glenn Tesler Pavel A Pevzner David Haussler Krishna M Roskin Robert Baertsch Hiram Clawson Terrence S Furey Angie S Hinrichs Donna Karolchik William J Kent Kate R Rosenbloom Heather Trumbower Matt Weirauch David N Cooper Peter D Stenson Bin Ma Michael Brent Manimozhiyan Arumugam David Shteynberg Richard R Copley Martin S Taylor Harold Riethman Uma Mudunuri Jane Peterson Mark Guyer Adam Felsenfeld Susan Old Stephen Mockrin Francis Collins

Nature 2004 Apr;428(6982):493-521

Human Genome Sequencing Center, Department of Molecular and Human Genetics, Baylor College of Medicine, MS BCM226, One Baylor Plaza, Houston, Texas 77030, USA. http://www.hgsc.bcm.tmc.edu

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http://dx.doi.org/10.1038/nature02426DOI Listing
April 2004