Publications by authors named "Stephen J Murphy"

61Publications

Extracranial and Intracranial Vasculopathy With "Moyamoya Phenomenon" in Association With Alagille Syndrome.

Front Neurol 2018 29;9:1194. Epub 2019 Jan 29.

Department of Neurology, The Adelaide and Meath Hospital, Dublin, Incorporating The National Children's Hospital (AMNCH)/Tallaght University Hospital, Dublin, Ireland.

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http://dx.doi.org/10.3389/fneur.2018.01194DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6362309PMC
January 2019

Optimal Antiplatelet Therapy in Moderate to Severe Asymptomatic and Symptomatic Carotid Stenosis: A Comprehensive Review of the Literature.

Eur J Vasc Endovasc Surg 2019 02 7;57(2):199-211. Epub 2018 Nov 7.

Vascular Neurology Research Foundation, The Adelaide and Meath Hospital, Dublin, incorporating the National Children's Hospital (AMNCH)/Tallaght University Hospital, Dublin, Ireland; Department of Neurology, The Adelaide and Meath Hospital, Dublin, incorporating the National Children's Hospital (AMNCH)/Tallaght University Hospital, Dublin, Ireland; Stroke Service, The Adelaide and Meath Hospital, Dublin, incorporating the National Children's Hospital (AMNCH)/Tallaght University Hospital, Dublin, Ireland; Department of Clinical Neurosciences, Royal Free Campus, UCL Institute of Neurology, London, UK; Irish Centre for Vascular Biology, Dublin, Ireland; Academic Unit of Neurology, School of Medicine, Trinity College Dublin, Ireland. Electronic address:

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https://linkinghub.elsevier.com/retrieve/pii/S10785884183069
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http://dx.doi.org/10.1016/j.ejvs.2018.09.018DOI Listing
February 2019

Enhanced mRNA FISH with compact quantum dots.

Nat Commun 2018 10 26;9(1):4461. Epub 2018 Oct 26.

Department of Bioengineering, University of Illinois at Urbana-Champaign, Urbana, IL, 61801, USA.

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http://www.nature.com/articles/s41467-018-06740-x
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http://dx.doi.org/10.1038/s41467-018-06740-xDOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6203793PMC
October 2018

The generic drug user fee amendments: an economic perspective.

J Law Biosci 2018 May 11;5(1):103-141. Epub 2018 Apr 11.

National Bureau of Economic Research, Cambridge, Massachusetts, USA.

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https://academic.oup.com/jlb/article/5/1/103/4968039
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http://dx.doi.org/10.1093/jlb/lsy002DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5912081PMC
May 2018

SVAtools for junction detection of genome-wide chromosomal rearrangements by mate-pair sequencing (MPseq).

Cancer Genet 2018 02 2;221:1-18. Epub 2017 Dec 2.

Center for Individualized Medicine-Biomarker Discovery, Mayo Clinic, Rochester MN, USA; Department of Molecular Medicine, Mayo Clinic, Rochester MN, USA. Electronic address:

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http://dx.doi.org/10.1016/j.cancergen.2017.11.009DOI Listing
February 2018

Identification of a pyruvate-to-lactate signature in pancreatic intraductal papillary mucinous neoplasms.

Pancreatology 2018 Jan 14;18(1):46-53. Epub 2017 Nov 14.

Department of Molecular Medicine, Mayo Clinic, 200 First Street SW, Rochester, MN 55905, USA; Department of Radiology, Mayo Clinic, 200 First Street SW, Rochester, MN 55905, USA. Electronic address:

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http://dx.doi.org/10.1016/j.pan.2017.11.006DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6139027PMC
January 2018

Retention of Interstitial Genes between and Is Associated with Low-Risk Prostate Cancer.

Cancer Res 2017 11 10;77(22):6157-6167. Epub 2017 Nov 10.

Biomarker Discovery Program, Center of Individualized Medicine, Mayo Clinic, Rochester, Minnesota.

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http://dx.doi.org/10.1158/0008-5472.CAN-17-0529DOI Listing
November 2017

Distance-dependent seedling mortality and long-term spacing dynamics in a neotropical forest community.

Ecol Lett 2017 Nov 4;20(11):1469-1478. Epub 2017 Oct 4.

School of Forestry and Environmental Studies, Yale University, 195 Prospect Street, New Haven, CT, 06511, USA.

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http://dx.doi.org/10.1111/ele.12856DOI Listing
November 2017

Genomic rearrangements in sporadic lymphangioleiomyomatosis: an evolving genetic story.

Mod Pathol 2017 09 23;30(9):1223-1233. Epub 2017 Jun 23.

Departments of Pulmonary and Critical Care Medicine, Mayo Clinic, Rochester, MN, USA.

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http://dx.doi.org/10.1038/modpathol.2017.52DOI Listing
September 2017

Clinical outcomes and a high prevalence of abnormalities on comprehensive arterial and venous thrombophilia screening in TIA or ischaemic stroke patients with a patent foramen ovale, an inter-atrial septal aneurysm or both.

J Neurol Sci 2017 Jun 12;377:227-233. Epub 2017 Apr 12.

Department of Neurology, The Adelaide and Meath Hospital, incorporating The National Children's Hospital, Dublin, Ireland; Stroke Service, The Adelaide and Meath Hospital, incorporating The National Children's Hospital, Dublin, Ireland; Vascular Neurology Research Foundation, The Adelaide and Meath Hospital, incorporating The National Children's Hospital, Dublin, Ireland; Department of Clinical Neurosciences, Royal Free Campus, UCL Institute of Neurology, London, UK; Academic Unit of Neurology, School of Medicine, Trinity College, Dublin, Ireland. Electronic address:

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http://dx.doi.org/10.1016/j.jns.2017.04.014DOI Listing
June 2017

Drivers of community assembly in tropical forest restoration sites: role of local environment, landscape, and space.

Ecol Appl 2017 09 7;27(6):1731-1745. Epub 2017 Jul 7.

School of Forestry and Environmental Studies, Yale University, 195 Prospect Street, New Haven, Connecticut, 06511, USA.

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http://dx.doi.org/10.1002/eap.1562DOI Listing
September 2017

Higher β-diversity observed for herbs over woody plants is driven by stronger habitat filtering in a tropical understory.

Ecology 2016 Aug;97(8):2074-2084

School of Forestry and Environmental Studies, Yale University, 195 Prospect Street, New Haven, Connecticut, 06511, USA.

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http://dx.doi.org/10.1890/15-1801.1DOI Listing
August 2016

The hypoxia-inducible factor (HIF) couples immunity with metabolism.

Semin Immunol 2016 10 4;28(5):469-477. Epub 2016 Oct 4.

Conway Institute, Charles Institute & Systems Biology Ireland, University College Dublin, Belfield Dublin 4, Ireland; IRCAN, Centre A. Lacassagne, University of Nice-Sophia Antipolis, 33 Avenue Valombrose, 06107 Nice, France; Centre Scientifique de Monaco (CSM), 8, Quai Antoine Premier, Monaco. Electronic address:

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http://dx.doi.org/10.1016/j.smim.2016.09.004DOI Listing
October 2016

Tree seedling richness, but not neighborhood composition, influences insect herbivory in a temperate deciduous forest community.

Ecol Evol 2016 09 12;6(17):6310-9. Epub 2016 Aug 12.

School of Forestry and Environmental Studies Yale University 195 Prospect Street New Haven Connecticut 06511; Smithsonian Tropical Research Institute Box 0843-03092 Balboa Ancón Panama.

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http://dx.doi.org/10.1002/ece3.2336DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5016651PMC
September 2016

Continuation and adherence rates on initially-prescribed intensive secondary prevention therapy after Rapid Access Stroke Prevention (RASP) service assessment.

J Neurol Sci 2016 Feb 8;361:13-8. Epub 2015 Dec 8.

Department of Neurology, The Adelaide and Meath Hospital, incorporating the National Children's Hospital (AMNCH), Dublin, Ireland; Department of Stroke Service, The Adelaide and Meath Hospital, incorporating the National Children's Hospital (AMNCH), Dublin, Ireland; Department of Clinical Neurosciences, Royal Free Campus, UCL Institute of Neurology, London, UK; Academic Unit of Neurology, School of Medicine, Trinity College Dublin, Ireland. Electronic address:

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http://dx.doi.org/10.1016/j.jns.2015.12.009DOI Listing
February 2016

Topoisomerase 2 Alpha Cooperates with Androgen Receptor to Contribute to Prostate Cancer Progression.

PLoS One 2015 11;10(11):e0142327. Epub 2015 Nov 11.

Department of Molecular Pharmacology and Experimental Therapeutics, Mayo Clinic, Rochester, Minnesota, United States of America.

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http://journals.plos.org/plosone/article?id=10.1371/journal.pone.0142327PLOS
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4641711PMC
June 2016

Truncated ERG Oncoproteins from TMPRSS2-ERG Fusions Are Resistant to SPOP-Mediated Proteasome Degradation.

Mol Cell 2015 Sep 3;59(6):904-16. Epub 2015 Sep 3.

Department of Biochemistry and Molecular Biology, Mayo Clinic College of Medicine, Rochester, MN 55905, USA; Department of Urology, Mayo Clinic College of Medicine, Rochester, MN 55905, USA; Mayo Clinic Cancer Center, Mayo Clinic College of Medicine, Rochester, MN 55905, USA. Electronic address:

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http://www.pcf.org/atf/cf/%7B7c77d6a2-5859-4d60-af47-132fd0f
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http://linkinghub.elsevier.com/retrieve/pii/S109727651500583
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http://dx.doi.org/10.1016/j.molcel.2015.07.025DOI Listing
September 2015

Chromosomal catastrophe is a frequent event in clinically insignificant prostate cancer.

Oncotarget 2015 Oct;6(30):29087-96

Department of Molecular Medicine, Mayo Clinic, Rochester, Minnesota, USA.

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http://dx.doi.org/10.18632/oncotarget.4900DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4745713PMC
October 2015

Transcriptomic and Immunohistochemical Profiling of SLC6A14 in Pancreatic Ductal Adenocarcinoma.

Biomed Res Int 2015 27;2015:593572. Epub 2015 May 27.

Department of Molecular Medicine, Mayo Clinic, 200 First Street SW, Rochester, MN 55905, USA ; Department of Radiology, Mayo Clinic, 200 First Street SW, Rochester, MN 55905, USA.

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http://dx.doi.org/10.1155/2015/593572DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4461733PMC
March 2016

Platelet function testing in transient ischaemic attack and ischaemic stroke: A comprehensive systematic review of the literature.

Platelets 2015 4;26(5):402-12. Epub 2015 Jun 4.

Department of Neurology, The Adelaide and Meath Hospital, Dublin, incorporating the National Children's Hospital , Dublin , Ireland .

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http://dx.doi.org/10.3109/09537104.2015.1049139DOI Listing
March 2016

Relationship between ADAMTS13 activity, von Willebrand factor antigen levels and platelet function in the early and late phases after TIA or ischaemic stroke.

J Neurol Sci 2015 Jan 31;348(1-2):35-40. Epub 2014 Oct 31.

Haemostasis Research Unit, University College, London, UK; Dept. of Haematology, University College, London, UK.

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http://dx.doi.org/10.1016/j.jns.2014.10.035DOI Listing
January 2015

Genomic rearrangements define lineage relationships between adjacent lepidic and invasive components in lung adenocarcinoma.

Cancer Res 2014 Jun;74(11):3157-67

Authors' Affiliations: Departments of Molecular Medicine, General Thoracic Surgery, Pulmonary and Critical Care Medicine, Health Sciences Research, and Laboratory Medicine and Pathology, Mayo Clinic, Rochester, Minnesota

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http://dx.doi.org/10.1158/0008-5472.CAN-13-1727DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4399556PMC
June 2014

BIMA V3: an aligner customized for mate pair library sequencing.

Bioinformatics 2014 Jun 12;30(11):1627-9. Epub 2014 Feb 12.

Department of Information Technology, MN 55905, Department of Molecular Medicine, Department of Laboratory Medicine and Pathology and Department of Biomedical Statistics and Informatics, Mayo Clinic, Rochester, MN 55905, USA.

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https://academic.oup.com/bioinformatics/article-lookup/doi/1
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http://dx.doi.org/10.1093/bioinformatics/btu078DOI Listing
June 2014

A simple method for gene phasing using mate pair sequencing.

BMC Med Genet 2014 Feb 6;15:19. Epub 2014 Feb 6.

Department of Laboratory Medicine and Pathology, Mayo Clinic, Rochester, MN 55905, USA.

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http://dx.doi.org/10.1186/1471-2350-15-19DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3930533PMC
February 2014

Retromer maintains basolateral distribution of the type II TGF-β receptor via the recycling endosome.

Mol Biol Cell 2013 Jul 29;24(14):2285-98. Epub 2013 May 29.

Thoracic Disease Research Unit, Departments of Biochemistry/Molecular Biology and Medicine, Mayo Clinic Cancer Center, Rochester, MN 55905, USA.

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http://dx.doi.org/10.1091/mbc.E13-02-0093DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3708733PMC
July 2013

Lineage relationship of Gleason patterns in Gleason score 7 prostate cancer.

Cancer Res 2013 Jun 21;73(11):3275-84. Epub 2013 May 21.

Departments of Molecular Pharmacology and Experimental Therapeutics, Laboratory Medicine and Pathology, Molecular Medicine, and Urology, Mayo Clinic, Rochester,MN 55905, USA.

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http://dx.doi.org/10.1158/0008-5472.CAN-12-2803DOI Listing
June 2013

Florivores prefer white versus pink petal color morphs in wild radish, Raphanus sativus.

Oecologia 2013 May 19;172(1):189-95. Epub 2012 Oct 19.

Department of Biology, Denison University, Granville, OH 43023, USA.

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http://dx.doi.org/10.1007/s00442-012-2480-zDOI Listing
May 2013

Mate pair sequencing of whole-genome-amplified DNA following laser capture microdissection of prostate cancer.

DNA Res 2012 Oct 18;19(5):395-406. Epub 2012 Sep 18.

Department of Molecular Medicine, Mayo Clinic, Medical Sciences Building 2, 200 First St., SW, Rochester, MN 55905, USA.

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http://dx.doi.org/10.1093/dnares/dss021DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3473372PMC
October 2012

A unique element in the cytoplasmic tail of the type II transforming growth factor-beta receptor controls basolateral delivery.

Mol Biol Cell 2007 Oct 18;18(10):3788-99. Epub 2007 Jul 18.

Thoracic Diseases Research Unit, Department of Biochemistry and Molecular Biology and Mayo Clinic Cancer Center, Mayo Clinic College of Medicine, Rochester, MN 55905, USA.

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http://dx.doi.org/10.1091/mbc.e06-10-0930DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC1995729PMC
October 2007

Imatinib mesylate inhibits the profibrogenic activity of TGF-beta and prevents bleomycin-mediated lung fibrosis.

J Clin Invest 2004 Nov;114(9):1308-16

Thoracic Disease Research Unit, Division of Pulmonary and Critical Care Medicine, Mayo Clinic College of Medicine, Rochester, Minnesota 55905, USA.

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http://dx.doi.org/10.1172/JCI19603DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC524221PMC
November 2004

Cell-type-specific activation of PAK2 by transforming growth factor beta independent of Smad2 and Smad3.

Mol Cell Biol 2003 Dec;23(23):8878-89

Department of Biochemistry and Molecular Biology, Thoracic Diseases Research Unit, and Mayo Clinic Cancer Center, Mayo Clinic College of Medicine, Rochester, Minnesota 55905, USA.

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http://www.ncbi.nlm.nih.gov/pmc/articles/PMC262664PMC
http://dx.doi.org/10.1128/mcb.23.23.8878-8889.2003DOI Listing
December 2003

Novel integrating adenoviral/retroviral hybrid vector for gene therapy.

Hum Gene Ther 2002 Apr;13(6):745-60

Molecular Medicine Program, Guggenheim 1836, Mayo Foundation, 200 First Street SW, Rochester, MN 55905, USA.

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http://dx.doi.org/10.1089/104303402317322302DOI Listing
April 2002