Stephen J Bush

Stephen J Bush

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Stephen J Bush

Stephen J Bush

Publications by authors named "Stephen J Bush"

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Spatial Network Mapping of Pulmonary Multidrug-Resistant Tuberculosis Cavities Using RNA Sequencing.

Am J Respir Crit Care Med 2019 Aug;200(3):370-380

1Centre for Lung Infection and Immunity, Division of Pulmonology, Department of Medicine and UCT Lung Institute and South African MRC/UCT Centre for the Study of Antimicrobial Resistance, University of Cape Town, Cape Town, South Africa.

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https://www.atsjournals.org/doi/10.1164/rccm.201807-1361OC
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http://dx.doi.org/10.1164/rccm.201807-1361OCDOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6680310PMC
August 2019

Network analysis of the social and demographic influences on name choice within the UK (1838-2016).

PLoS One 2018 31;13(10):e0205759. Epub 2018 Oct 31.

The Roslin Institute, University of Edinburgh, Midlothian, United Kingdom.

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http://journals.plos.org/plosone/article?id=10.1371/journal.pone.0205759PLOS
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6209202PMC
March 2019

Characterisation of the British honey bee metagenome.

Nat Commun 2018 11 26;9(1):4995. Epub 2018 Nov 26.

The Roslin Institute and Royal (Dick) School of Veterinary Studies, University of Edinburgh, Easter Bush, EH25 9RG, Edinburgh, UK.

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http://dx.doi.org/10.1038/s41467-018-07426-0DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6255801PMC
November 2018

Cross-species inference of long non-coding RNAs greatly expands the ruminant transcriptome.

Genet Sel Evol 2018 04 24;50(1):20. Epub 2018 Apr 24.

The Roslin Institute, University of Edinburgh, Easter Bush Campus, Edinburgh, Midlothian, EH25 9RG, UK.

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http://dx.doi.org/10.1186/s12711-018-0391-0DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5926538PMC
April 2018

A high resolution atlas of gene expression in the domestic sheep (Ovis aries).

PLoS Genet 2017 Sep 15;13(9):e1006997. Epub 2017 Sep 15.

The Roslin Institute and Royal (Dick) School of Veterinary Studies, University of Edinburgh, Edinburgh, Scotland, United Kingdom.

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http://dx.doi.org/10.1371/journal.pgen.1006997DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5626511PMC
September 2017

Integration of quantitated expression estimates from polyA-selected and rRNA-depleted RNA-seq libraries.

BMC Bioinformatics 2017 Jun 13;18(1):301. Epub 2017 Jun 13.

The Roslin Institute and Royal (Dick) School of Veterinary Studies, University of Edinburgh, Easter Bush, Midlothian, EH25 9RG, UK.

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http://dx.doi.org/10.1186/s12859-017-1714-9DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5470212PMC
June 2017

Alternative splicing and the evolution of phenotypic novelty.

Philos Trans R Soc Lond B Biol Sci 2017 02;372(1713)

Department of Biology and Biochemistry, University of Bath, Bath BA2 7AY, UK

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http://dx.doi.org/10.1098/rstb.2015.0474DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5182408PMC
February 2017

Linezolid for Infants and Toddlers With Disseminated Tuberculosis: First Steps.

Clin Infect Dis 2016 Nov;63(suppl 3):S80-S87

Center for Infectious Diseases Research and Experimental Therapeutics, Baylor Research Institute, Baylor University Medical Center, Dallas, Texas Department of Medicine, University of Cape Town, Observatory, South Africa.

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http://dx.doi.org/10.1093/cid/ciw482DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5064157PMC
November 2016

Lineage-specific sequence evolution and exon edge conservation partially explain the relationship between evolutionary rate and expression level in A. thaliana.

Mol Ecol 2015 Jun 5;24(12):3093-106. Epub 2015 Jun 5.

Department of Biology and Biochemistry, University of Bath, Bath, BA2 7AY, UK.

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http://dx.doi.org/10.1111/mec.13221DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4480654PMC
June 2015

Correcting for differential transcript coverage reveals a strong relationship between alternative splicing and organism complexity.

Mol Biol Evol 2014 Jun 27;31(6):1402-13. Epub 2014 Mar 27.

Department of Biology and Biochemistry, University of Bath, Bath, United Kingdom

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http://dx.doi.org/10.1093/molbev/msu083DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4032128PMC
June 2014