Publications Authored by Stephen J Bush

Spatial Network Mapping of Pulmonary Multidrug-Resistant Tuberculosis Cavities Using RNA Sequencing.

Am J Respir Crit Care Med 2019 Aug;200(3):370-380

1Centre for Lung Infection and Immunity, Division of Pulmonology, Department of Medicine and UCT Lung Institute and South African MRC/UCT Centre for the Study of Antimicrobial Resistance, University of Cape Town, Cape Town, South Africa.

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https://www.atsjournals.org/doi/10.1164/rccm.201807-1361OC	Publisher Site
http://dx.doi.org/10.1164/rccm.201807-1361OC	DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6680310	PMC

August 2019

A Gene Expression Atlas of the Domestic Water Buffalo ().

Authors:

Rachel Young Lucas Lefevre Stephen J Bush Akshay Joshi Salam Herojeet Singh Santosh Kumar Jadhav Velu Dhanikachalam Zofia M Lisowski Daniela Iamartino Kim M Summers John L Williams Alan L Archibald Suresh Gokhale Satish Kumar David A Hume

Front Genet 2019 24;10:668. Epub 2019 Jul 24.

Mater Research Institute-University of Queensland, Translational Research Institute, Brisbane, QLD, Australia.

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http://dx.doi.org/10.3389/fgene.2019.00668	DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6689995	PMC

July 2019

Correction: Pleiotropic Impacts of Macrophage and Microglial Deficiency on Development in Rats with Targeted Mutation of the Locus.

J Immunol 2019 Jun 26;202(11):3334-3335. Epub 2019 Apr 26.

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http://dx.doi.org/10.4049/jimmunol.1900420	DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6526391	PMC

June 2019

Network analysis of the social and demographic influences on name choice within the UK (1838-2016).

Authors:

Stephen J Bush Anna Powell-Smith Tom C Freeman

PLoS One 2018 31;13(10):e0205759. Epub 2018 Oct 31.

The Roslin Institute, University of Edinburgh, Midlothian, United Kingdom.

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http://journals.plos.org/plosone/article?id=10.1371/journal.pone.0205759	PLOS
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6209202	PMC

March 2019

Arginine to Glutamine Variant in Olfactomedin Like 3 () Is a Candidate for Severe Goniodysgenesis and Glaucoma in the Border Collie Dog Breed.

Authors:

Carys A Pugh Lindsay L Farrell Ailsa J Carlisle Stephen J Bush Adam Ewing Violeta Trejo-Reveles Oswald Matika Arne de Kloet Caitlin Walsh Stephen C Bishop James G D Prendergast Joe Rainger Jeffrey J Schoenebeck Kim M Summers

G3 (Bethesda) 2019 03 7;9(3):943-954. Epub 2019 Mar 7.

The Roslin Institute and Royal (Dick) School of Veterinary Studies, Easter Bush, EH25 9RG, United Kingdom

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http://dx.doi.org/10.1534/g3.118.200944	DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6404605	PMC

March 2019

Comprehensive Transcriptional Profiling of the Gastrointestinal Tract of Ruminants from Birth to Adulthood Reveals Strong Developmental Stage Specific Gene Expression.

Authors:

Stephen J Bush Mary E B McCulloch Charity Muriuki Mazdak Salavati Gemma M Davis Iseabail L Farquhar Zofia M Lisowski Alan L Archibald David A Hume Emily L Clark

G3 (Bethesda) 2019 02 7;9(2):359-373. Epub 2019 Feb 7.

The Roslin Institute and Royal (Dick) School of Veterinary Studies, University of Edinburgh, Edinburgh, UK

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http://dx.doi.org/10.1534/g3.118.200810	DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6385975	PMC

February 2019

Characterization of Subpopulations of Chicken Mononuclear Phagocytes That Express TIM4 and CSF1R.

Authors:

Tuanjun Hu Zhiguang Wu Stephen J Bush Lucy Freem Lonneke Vervelde Kim M Summers David A Hume Adam Balic Pete Kaiser

J Immunol 2019 Feb 9;202(4):1186-1199. Epub 2019 Jan 9.

The Roslin Institute, University of Edinburgh, Easter Bush, Midlothian EH25 9RG, United Kingdom.

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http://www.jimmunol.org/lookup/doi/10.4049/jimmunol.1800504	Publisher Site
http://dx.doi.org/10.4049/jimmunol.1800504	DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6436730	PMC

February 2019

Pleiotropic Impacts of Macrophage and Microglial Deficiency on Development in Rats with Targeted Mutation of the Locus.

J Immunol 2018 11 24;201(9):2683-2699. Epub 2018 Sep 24.

The University of Edinburgh Centre for Inflammation Research, The Queen's Medical Research Institute, Edinburgh EH16 4TJ, United Kingdom;

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http://www.jimmunol.org/lookup/doi/10.4049/jimmunol.1701783	Publisher Site
http://dx.doi.org/10.4049/jimmunol.1701783	DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6196293	PMC

November 2018

Characterisation of the British honey bee metagenome.

Authors:

Tim Regan Mark W Barnett Dominik R Laetsch Stephen J Bush David Wragg Giles E Budge Fiona Highet Benjamin Dainat Joachim R de Miranda Mick Watson Mark Blaxter Tom C Freeman

Nat Commun 2018 11 26;9(1):4995. Epub 2018 Nov 26.

The Roslin Institute and Royal (Dick) School of Veterinary Studies, University of Edinburgh, Easter Bush, EH25 9RG, Edinburgh, UK.

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http://dx.doi.org/10.1038/s41467-018-07426-0	DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6255801	PMC

November 2018

ADGRE1 (EMR1, F4/80) Is a Rapidly-Evolving Gene Expressed in Mammalian Monocyte-Macrophages.

Authors:

Lindsey A Waddell Lucas Lefevre Stephen J Bush Anna Raper Rachel Young Zofia M Lisowski Mary E B McCulloch Charity Muriuki Kristin A Sauter Emily L Clark Katharine M Irvine Clare Pridans Jayne C Hope David A Hume

Front Immunol 2018 1;9:2246. Epub 2018 Oct 1.

Mater Research-University of Queensland, Woolloongabba, QLD, Australia.

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https://www.frontiersin.org/article/10.3389/fimmu.2018.02246	Publisher Site
http://dx.doi.org/10.3389/fimmu.2018.02246	DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6174849	PMC

October 2018

Combination of novel and public RNA-seq datasets to generate an mRNA expression atlas for the domestic chicken.

Authors:

Stephen J Bush Lucy Freem Amanda J MacCallum Jenny O'Dell Chunlei Wu Cyrus Afrasiabi Androniki Psifidi Mark P Stevens Jacqueline Smith Kim M Summers David A Hume

BMC Genomics 2018 Aug 7;19(1):594. Epub 2018 Aug 7.

The Roslin Institute, University of Edinburgh, Easter Bush Campus, Edinburgh, Midlothian, EH25 9RG, UK.

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http://dx.doi.org/10.1186/s12864-018-4972-7	DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6081845	PMC

August 2018

Cross-species inference of long non-coding RNAs greatly expands the ruminant transcriptome.

Authors:

Stephen J Bush Charity Muriuki Mary E B McCulloch Iseabail L Farquhar Emily L Clark David A Hume

Genet Sel Evol 2018 04 24;50(1):20. Epub 2018 Apr 24.

The Roslin Institute, University of Edinburgh, Easter Bush Campus, Edinburgh, Midlothian, EH25 9RG, UK.

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http://dx.doi.org/10.1186/s12711-018-0391-0	DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5926538	PMC

April 2018

Species-Specific Transcriptional Regulation of Genes Involved in Nitric Oxide Production and Arginine Metabolism in Macrophages.

Authors:

Rachel Young Stephen J Bush Lucas Lefevre Mary E B McCulloch Zofia M Lisowski Charity Muriuki Lindsey A Waddell Kristin A Sauter Clare Pridans Emily L Clark David A Hume

Immunohorizons 2018 Jan;2(1):27-37

The Roslin Institute and Royal (Dick) School of Veterinary Studies, University of Edinburgh, Easter Bush, Midlothian EH25 9RG, United Kingdom.

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http://dx.doi.org/10.4049/immunohorizons.1700073	DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6245571	PMC

January 2018

A high resolution atlas of gene expression in the domestic sheep (Ovis aries).

Authors:

Emily L Clark Stephen J Bush Mary E B McCulloch Iseabail L Farquhar Rachel Young Lucas Lefevre Clare Pridans Hiu G Tsang Chunlei Wu Cyrus Afrasiabi Mick Watson C Bruce Whitelaw Tom C Freeman Kim M Summers Alan L Archibald David A Hume

PLoS Genet 2017 Sep 15;13(9):e1006997. Epub 2017 Sep 15.

The Roslin Institute and Royal (Dick) School of Veterinary Studies, University of Edinburgh, Edinburgh, Scotland, United Kingdom.

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http://dx.doi.org/10.1371/journal.pgen.1006997	DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5626511	PMC

September 2017

Integration of quantitated expression estimates from polyA-selected and rRNA-depleted RNA-seq libraries.

Authors:

Stephen J Bush Mary E B McCulloch Kim M Summers David A Hume Emily L Clark

BMC Bioinformatics 2017 Jun 13;18(1):301. Epub 2017 Jun 13.

The Roslin Institute and Royal (Dick) School of Veterinary Studies, University of Edinburgh, Easter Bush, Midlothian, EH25 9RG, UK.

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http://dx.doi.org/10.1186/s12859-017-1714-9	DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5470212	PMC

June 2017

Alternative splicing and the evolution of phenotypic novelty.

Authors:

Stephen J Bush Lu Chen Jaime M Tovar-Corona Araxi O Urrutia

Philos Trans R Soc Lond B Biol Sci 2017 02;372(1713)

Department of Biology and Biochemistry, University of Bath, Bath BA2 7AY, UK

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http://dx.doi.org/10.1098/rstb.2015.0474	DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5182408	PMC

February 2017

Linezolid for Infants and Toddlers With Disseminated Tuberculosis: First Steps.

Authors:

Devyani Deshpande Shashikant Srivastava Jotam G Pasipanodya Stephen J Bush Eric Nuermberger Soumya Swaminathan Tawanda Gumbo

Clin Infect Dis 2016 Nov;63(suppl 3):S80-S87

Center for Infectious Diseases Research and Experimental Therapeutics, Baylor Research Institute, Baylor University Medical Center, Dallas, Texas Department of Medicine, University of Cape Town, Observatory, South Africa.

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