Publications by authors named "Stephen J Bush"

36Publications

Read trimming has minimal effect on bacterial SNP-calling accuracy.

Authors:
Stephen J Bush

Microb Genom 2020 Dec 11;6(12). Epub 2020 Dec 11.

Nuffield Department of Medicine, University of Oxford, Oxford, UK.

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December 2020

MeDAS: a Metazoan Developmental Alternative Splicing database.

Nucleic Acids Res 2021 01;49(D1):D144-D150

Key Laboratory of Birth Defects and Related Diseases of Women and Children of MOE, Department of Laboratory Medicine, State Key Laboratory of Biotherapy, West China Second Hospital, Sichuan University, Chengdu 610041, China.

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January 2021

Network analysis of transcriptomic diversity amongst resident tissue macrophages and dendritic cells in the mouse mononuclear phagocyte system.

PLoS Biol 2020 10 8;18(10):e3000859. Epub 2020 Oct 8.

Mater Research Institute-University of Queensland, Translational Research Institute, Brisbane, Queensland, Australia.

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October 2020

Species-Specificity of Transcriptional Regulation and the Response to Lipopolysaccharide in Mammalian Macrophages.

Front Cell Dev Biol 2020 21;8:661. Epub 2020 Jul 21.

Mater Research Institute-University of Queensland, Translational Research Institute, Woolloongabba, QLD, Australia.

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July 2020

Evaluation of methods for detecting human reads in microbial sequencing datasets.

Microb Genom 2020 07;6(7)

National Institute for Health Research Oxford Biomedical Research Centre, Oxford, UK.

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July 2020

A Mini-Atlas of Gene Expression for the Domestic Goat ().

Front Genet 2019 4;10:1080. Epub 2019 Nov 4.

The Roslin Institute and Royal (Dick) School of Veterinary Studies, University of Edinburgh, Edinburgh, United Kingdom.

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November 2019

Elimination of Reference Mapping Bias Reveals Robust Immune Related Allele-Specific Expression in Crossbred Sheep.

Front Genet 2019 19;10:863. Epub 2019 Sep 19.

The Roslin Institute and Royal (Dick) School of Veterinary Studies, University of Edinburgh, Easter Bush, Edinburgh, United Kingdom.

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September 2019

Spatial Network Mapping of Pulmonary Multidrug-Resistant Tuberculosis Cavities Using RNA Sequencing.

Am J Respir Crit Care Med 2019 08;200(3):370-380

1Centre for Lung Infection and Immunity, Division of Pulmonology, Department of Medicine and UCT Lung Institute and South African MRC/UCT Centre for the Study of Antimicrobial Resistance, University of Cape Town, Cape Town, South Africa.

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August 2019

Characterization of Subpopulations of Chicken Mononuclear Phagocytes That Express TIM4 and CSF1R.

J Immunol 2019 02 9;202(4):1186-1199. Epub 2019 Jan 9.

The Roslin Institute, University of Edinburgh, Easter Bush, Midlothian EH25 9RG, United Kingdom.

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February 2019