Stephan C Schuster

Stephan C Schuster

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Stephan C Schuster

Publications by authors named "Stephan C Schuster"

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Pleiotropic Effects of c-di-GMP Content in .

Appl Environ Microbiol 2019 May 2;85(10). Epub 2019 May 2.

Department of Biomedical Sciences, City University of Hong Kong, Kowloon Tong, Hong Kong

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http://dx.doi.org/10.1128/AEM.00152-19DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6498148PMC
May 2019

Global Science Meets Ethnic Diversity: Ian McGonigle interviews GenomeAsia100k Scientific Chairman Stephan Schuster-ADDENDUM.

Genet Res (Camb) 2019 05 28;101:e7. Epub 2019 May 28.

School of Biological Sciences,Nanyang Technological University,Singapore.

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http://dx.doi.org/10.1017/S0016672319000053DOI Listing
May 2019

Global science meets ethnic diversity: Ian McGonigle interviews GenomeAsia100K Scientific Chairman Stephan Schuster.

Genet Res (Camb) 2019 03 26;101:e5. Epub 2019 Mar 26.

School of Biological Sciences,Nanyang Technological University,Singapore.

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http://dx.doi.org/10.1017/S001667231800006XDOI Listing
March 2019

Characterization of a novel multidrug resistance plasmid pSGB23 isolated from subspecies enterica serovar Saintpaul.

Gut Pathog 2018 4;10:20. Epub 2018 Jun 4.

2Singapore Centre for Environmental Life Sciences Engineering (SCELSE), Nanyang Technological University, Singapore, 637551 Singapore.

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http://dx.doi.org/10.1186/s13099-018-0249-6DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5985583PMC
June 2018

Whole-genome analysis of finds that pulsed hybridization impacts evolution at high latitudes.

Commun Biol 2018 31;1:51. Epub 2018 May 31.

2Department of Biological Sciences, University at Buffalo (SUNY), 109 Cooke Hall, Buffalo, NY 14260 USA.

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http://dx.doi.org/10.1038/s42003-018-0058-yDOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6123727PMC
May 2018

Acquisition of resistance to carbapenem and macrolide-mediated quorum sensing inhibition by via ICE.

Commun Biol 2018 31;1:57. Epub 2018 May 31.

2Singapore Centre for Environmental Life Sciences Engineering (SCELSE), Nanyang Technological University, 60 Nanyang Drive, Singapore, 637551 Singapore.

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http://www.nature.com/articles/s42003-018-0064-0
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http://dx.doi.org/10.1038/s42003-018-0064-0DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6123621PMC
May 2018

Complete Genome Sequence of the Photoautotrophic and Bacteriochlorophyll -Synthesizing Green Sulfur Bacterium DSM 1677.

Genome Announc 2017 Jun 15;5(24). Epub 2017 Jun 15.

Department of Biochemistry and Molecular Biology, Eberly College of Science, The Pennsylvania State University, University Park, Pennsylvania, USA

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http://genomea.asm.org/lookup/doi/10.1128/genomeA.00529-17
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http://dx.doi.org/10.1128/genomeA.00529-17DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5473272PMC
June 2017

Genome Sequence of sp. Strain HL-130-GSB from the Phylum .

Genome Announc 2017 Jun 15;5(24). Epub 2017 Jun 15.

Department of Biochemistry and Molecular Biology, The Pennsylvania State University, University Park, Pennsylvania, USA

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http://dx.doi.org/10.1128/genomeA.00538-17DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5473276PMC
June 2017

Draft Genome Sequence of Strain MT-Cab ().

Genome Announc 2017 Jun 29;5(26). Epub 2017 Jun 29.

Department of Biochemistry and Molecular Biology, The Pennsylvania State University, University Park, Pennsylvania, USA

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http://genomea.asm.org/lookup/doi/10.1128/genomeA.00547-17
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http://dx.doi.org/10.1128/genomeA.00547-17DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5638275PMC
June 2017

Horizontal gene transfer is more frequent with increased heterotrophy and contributes to parasite adaptation.

Proc Natl Acad Sci U S A 2016 Nov 24;113(45):E7010-E7019. Epub 2016 Oct 24.

Intercollege Graduate Program in Plant Biology, Huck Institutes of the Life Sciences, The Pennsylvania State University, University Park, PA 16802;

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http://dx.doi.org/10.1073/pnas.1608765113DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5111717PMC
November 2016

Mitogenomes reveal diversity of the European Lyme borreliosis vector Ixodes ricinus in Italy.

Mol Phylogenet Evol 2016 08 7;101:194-202. Epub 2016 May 7.

Department of Biochemistry and Molecular Biology, Pennsylvania State University, University Park, PA, USA; Center for Comparative Genomics and Bioinformatics, Pennsylvania State University, University Park, PA, USA; Singapore Centre on Environmental Life Sciences Engineering, Nanyang Technological University, Singapore.

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http://dx.doi.org/10.1016/j.ympev.2016.05.009DOI Listing
August 2016

The quest to resolve recent radiations: Plastid phylogenomics of extinct and endangered Hawaiian endemic mints (Lamiaceae).

Mol Phylogenet Evol 2016 06 5;99:16-33. Epub 2016 Mar 5.

Department of Biological Sciences, University at Buffalo (SUNY), Buffalo, NY 14260, USA. Electronic address:

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http://dx.doi.org/10.1016/j.ympev.2016.02.024DOI Listing
June 2016

Elephantid Genomes Reveal the Molecular Bases of Woolly Mammoth Adaptations to the Arctic.

Cell Rep 2015 Jul 2;12(2):217-28. Epub 2015 Jul 2.

Center for Comparative Genomics and Bioinformatics, Pennsylvania State University, 506B Wartik Lab, University Park, PA 16802, USA.

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http://dx.doi.org/10.1016/j.celrep.2015.06.027DOI Listing
July 2015

Comparative and population mitogenomic analyses of Madagascar's extinct, giant 'subfossil' lemurs.

J Hum Evol 2015 Feb 16;79:45-54. Epub 2014 Dec 16.

Department of Anthropology, Pennsylvania State University, University Park, PA 16802, USA; Department of Biology, Pennsylvania State University, University Park, PA 16802, USA. Electronic address:

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http://dx.doi.org/10.1016/j.jhevol.2014.06.016DOI Listing
February 2015

Khoisan hunter-gatherers have been the largest population throughout most of modern-human demographic history.

Nat Commun 2014 Dec 4;5:5692. Epub 2014 Dec 4.

1] Center for Comparative Genomics and Bioinformatics, Pennsylvania State University, 310 Wartik Lab, University Park, Pennsylvania 16802, USA [2] Singapore Centre on Environmental Life Sciences Engineering, Nanyang Technological University, 60 Nanyang Drive, SBS-01N-27, Singapore 637551, Singapore.

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http://www.nature.com/articles/ncomms6692
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http://dx.doi.org/10.1038/ncomms6692DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4268704PMC
December 2014

Helicobacter pylori genomic microevolution during naturally occurring transmission between adults.

PLoS One 2013 10;8(12):e82187. Epub 2013 Dec 10.

Department of Biochemistry and Molecular Biology, Pennsylvania State University, University Park, Pennsylvania, United States of America ; Center for Comparative Genomics and Bioinformatics, Pennsylvania State University, University Park, Pennsylvania, United States of America.

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http://journals.plos.org/plosone/article?id=10.1371/journal.pone.0082187PLOS
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3858298PMC
September 2014

Ocean microbes. Multispecies diel transcriptional oscillations in open ocean heterotrophic bacterial assemblages.

Science 2014 Jul;345(6193):207-12

Department of Civil and Environmental Engineering, Massachusetts Institute of Technology, Cambridge, MA 02139, USA. Center for Microbial Oceanography: Research and Education (C-MORE), University of Hawaii, Honolulu, HI 96822, USA. Department of Biological Engineering, Massachusetts Institute of Technology, Cambridge, MA 02139, USA.

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http://www.sciencemag.org/cgi/doi/10.1126/science.1252476
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http://dx.doi.org/10.1126/science.1252476DOI Listing
July 2014

A mutation burst during the acute phase of Helicobacter pylori infection in humans and rhesus macaques.

Nat Commun 2014 Jun 13;5:4165. Epub 2014 Jun 13.

1] Center for Comparative Genomics and Bioinformatics, Pennsylvania State University, University Park, Pennsylvania 16802, USA [2] School of Pathology, M504 University of Western Australia, Crawley, Western Australia 6009, Australia.

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http://dx.doi.org/10.1038/ncomms5165DOI Listing
June 2014

Galaxy tools to study genome diversity.

Gigascience 2013 Dec 30;2(1):17. Epub 2013 Dec 30.

Center for Comparative Genomics and Bioinformatics, Pennsylvania State University, University Park, PA 16802, USA.

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http://dx.doi.org/10.1186/2047-217X-2-17DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3877877PMC
December 2013

Chloride and organic osmolytes: a hybrid strategy to cope with elevated salinities by the moderately halophilic, chloride-dependent bacterium Halobacillus halophilus.

Environ Microbiol 2013 May 14;15(5):1619-33. Epub 2012 May 14.

Molecular Microbiology & Bioenergetics, Institute of Molecular Biosciences, Goethe University Frankfurt, Frankfurt am Main, Germany.

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http://doi.wiley.com/10.1111/j.1462-2920.2012.02770.x
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http://dx.doi.org/10.1111/j.1462-2920.2012.02770.xDOI Listing
May 2013

The zebrafish reference genome sequence and its relationship to the human genome.

Authors:
Kerstin Howe Matthew D Clark Carlos F Torroja James Torrance Camille Berthelot Matthieu Muffato John E Collins Sean Humphray Karen McLaren Lucy Matthews Stuart McLaren Ian Sealy Mario Caccamo Carol Churcher Carol Scott Jeffrey C Barrett Romke Koch Gerd-Jörg Rauch Simon White William Chow Britt Kilian Leonor T Quintais José A Guerra-Assunção Yi Zhou Yong Gu Jennifer Yen Jan-Hinnerk Vogel Tina Eyre Seth Redmond Ruby Banerjee Jianxiang Chi Beiyuan Fu Elizabeth Langley Sean F Maguire Gavin K Laird David Lloyd Emma Kenyon Sarah Donaldson Harminder Sehra Jeff Almeida-King Jane Loveland Stephen Trevanion Matt Jones Mike Quail Dave Willey Adrienne Hunt John Burton Sarah Sims Kirsten McLay Bob Plumb Joy Davis Chris Clee Karen Oliver Richard Clark Clare Riddle David Elliot David Eliott Glen Threadgold Glenn Harden Darren Ware Sharmin Begum Beverley Mortimore Beverly Mortimer Giselle Kerry Paul Heath Benjamin Phillimore Alan Tracey Nicole Corby Matthew Dunn Christopher Johnson Jonathan Wood Susan Clark Sarah Pelan Guy Griffiths Michelle Smith Rebecca Glithero Philip Howden Nicholas Barker Christine Lloyd Christopher Stevens Joanna Harley Karen Holt Georgios Panagiotidis Jamieson Lovell Helen Beasley Carl Henderson Daria Gordon Katherine Auger Deborah Wright Joanna Collins Claire Raisen Lauren Dyer Kenric Leung Lauren Robertson Kirsty Ambridge Daniel Leongamornlert Sarah McGuire Ruth Gilderthorp Coline Griffiths Deepa Manthravadi Sarah Nichol Gary Barker Siobhan Whitehead Michael Kay Jacqueline Brown Clare Murnane Emma Gray Matthew Humphries Neil Sycamore Darren Barker David Saunders Justene Wallis Anne Babbage Sian Hammond Maryam Mashreghi-Mohammadi Lucy Barr Sancha Martin Paul Wray Andrew Ellington Nicholas Matthews Matthew Ellwood Rebecca Woodmansey Graham Clark James D Cooper James Cooper Anthony Tromans Darren Grafham Carl Skuce Richard Pandian Robert Andrews Elliot Harrison Andrew Kimberley Jane Garnett Nigel Fosker Rebekah Hall Patrick Garner Daniel Kelly Christine Bird Sophie Palmer Ines Gehring Andrea Berger Christopher M Dooley Zübeyde Ersan-Ürün Cigdem Eser Horst Geiger Maria Geisler Lena Karotki Anette Kirn Judith Konantz Martina Konantz Martina Oberländer Silke Rudolph-Geiger Mathias Teucke Christa Lanz Günter Raddatz Kazutoyo Osoegawa Baoli Zhu Amanda Rapp Sara Widaa Cordelia Langford Fengtang Yang Stephan C Schuster Nigel P Carter Jennifer Harrow Zemin Ning Javier Herrero Steve M J Searle Anton Enright Robert Geisler Ronald H A Plasterk Charles Lee Monte Westerfield Pieter J de Jong Leonard I Zon John H Postlethwait Christiane Nüsslein-Volhard Tim J P Hubbard Hugues Roest Crollius Jane Rogers Derek L Stemple

Nature 2013 Apr 17;496(7446):498-503. Epub 2013 Apr 17.

Wellcome Trust Sanger Institute, Wellcome Trust Genome Campus, Hinxton, Cambridge CB10 1SA, UK.

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http://dx.doi.org/10.1038/nature12111DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3703927PMC
April 2013

Poor Man's 1000 Genome Project: Recent Human Population Expansion Confounds the Detection of Disease Alleles in 7,098 Complete Mitochondrial Genomes.

Front Genet 2013 28;4:13. Epub 2013 Feb 28.

Center for Comparative Genomics and Bioinformatics, Pennsylvania State University University Park, PA, USA.

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http://dx.doi.org/10.3389/fgene.2013.00013DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3584485PMC
March 2013

Unusual combinatorial involvement of poly-A/T tracts in organizing genes and chromatin in Dictyostelium.

Genome Res 2012 Jun 20;22(6):1098-106. Epub 2012 Mar 20.

Center for Eukaryotic Gene Regulation and Center for Comparative Genomics and Bioinformatics, Department of Biochemistry and Molecular Biology, The Pennsylvania State University, University Park, PA 16802, USA.

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http://dx.doi.org/10.1101/gr.131649.111DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3371697PMC
June 2012

Polymorphic integrations of an endogenous gammaretrovirus in the mule deer genome.

J Virol 2012 Mar 21;86(5):2787-96. Epub 2011 Dec 21.

Department of Biology, The Pennsylvania State University, University Park, Pennsylvania, USA.

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http://dx.doi.org/10.1128/JVI.06859-11DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3302240PMC
March 2012

Rapid diversification of coevolving marine Synechococcus and a virus.

Proc Natl Acad Sci U S A 2012 Mar 2;109(12):4544-9. Epub 2012 Mar 2.

Department of Biology and Marine Biology, Roger Williams University, Bristol, RI 02809, USA.

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http://dx.doi.org/10.1073/pnas.1120310109DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3311363PMC
March 2012

Chestnut resistance to the blight disease: insights from transcriptome analysis.

BMC Plant Biol 2012 Mar 19;12:38. Epub 2012 Mar 19.

The School of Forest Resources, and The Huck Institutes of the Life Sciences, Pennsylvania State University, 326 Forest Resources Building, University Park, PA 16802, USA.

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http://dx.doi.org/10.1186/1471-2229-12-38DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3376029PMC
March 2012

Metagenomic profile of the bacterial communities associated with Ixodes ricinus ticks.

PLoS One 2011 13;6(10):e25604. Epub 2011 Oct 13.

Department of Biodiversity and Molecular Ecology, Research and Innovation Centre, Fondazione Edmund Mach, San Michele all'Adige, Italy.

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http://journals.plos.org/plosone/article?id=10.1371/journal.pone.0025604PLOS
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3192763PMC
February 2012

Complete genome of Candidatus Chloracidobacterium thermophilum, a chlorophyll-based photoheterotroph belonging to the phylum Acidobacteria.

Environ Microbiol 2012 Jan 27;14(1):177-90. Epub 2011 Sep 27.

Department of Biochemistry and Molecular Biology, The Pennsylvania State University, University Park, PA 16802, USA.

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http://doi.wiley.com/10.1111/j.1462-2920.2011.02592.x
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http://dx.doi.org/10.1111/j.1462-2920.2011.02592.xDOI Listing
January 2012

Haloquadratum walsbyi: limited diversity in a global pond.

PLoS One 2011 20;6(6):e20968. Epub 2011 Jun 20.

Department of Membrane Biochemistry, Max-Planck-Institute of Biochemistry, Martinsried, Germany.

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http://journals.plos.org/plosone/article?id=10.1371/journal.pone.0020968PLOS
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3119063PMC
October 2011

Integrative analysis of environmental sequences using MEGAN4.

Genome Res 2011 Sep 20;21(9):1552-60. Epub 2011 Jun 20.

Center for Bioinformatics, Tübingen University, Tübingen, Germany.

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http://dx.doi.org/10.1101/gr.120618.111DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3166839PMC
September 2011

Metatranscriptomic analyses of chlorophototrophs of a hot-spring microbial mat.

ISME J 2011 Aug 23;5(8):1279-90. Epub 2011 Jun 23.

Department of Biochemistry and Molecular Biology, The Pennsylvania State University, University Park, PA 16802, USA.

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http://www.nature.com/articles/ismej201137
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http://dx.doi.org/10.1038/ismej.2011.37DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3146272PMC
August 2011

Ancestral polyploidy in seed plants and angiosperms.

Nature 2011 May 10;473(7345):97-100. Epub 2011 Apr 10.

Intercollege Graduate Degree Program in Plant Biology, The Pennsylvania State University, University Park, Pennsylvania 16802, USA.

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http://dx.doi.org/10.1038/nature09916DOI Listing
May 2011

Nodeomics: pathogen detection in vertebrate lymph nodes using meta-transcriptomics.

PLoS One 2010 Oct 18;5(10):e13432. Epub 2010 Oct 18.

Department of Biochemistry and Molecular Biology, Center for Comparative Genomics and Bioinformatics, The Pennsylvania State University, University Park, Pennsylvania, United States of America.

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http://journals.plos.org/plosone/article?id=10.1371/journal.pone.0013432PLOS
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2956653PMC
October 2010

Calling SNPs without a reference sequence.

BMC Bioinformatics 2010 Mar 15;11:130. Epub 2010 Mar 15.

Center for Comparative Genomics and Bioinformatics, Pennsylvania State University, USA.

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http://dx.doi.org/10.1186/1471-2105-11-130DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2851604PMC
March 2010

Interpretation of custom designed Illumina genotype cluster plots for targeted association studies and next-generation sequence validation.

BMC Res Notes 2010 Feb 22;3:39. Epub 2010 Feb 22.

Cancer Genetics Group, Children's Cancer Institute Australia for Medical Research, Sydney Children's Hospital, High Street, Randwick, NSW 2031, Australia.

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http://dx.doi.org/10.1186/1756-0500-3-39DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2848685PMC
February 2010