Stefanie A Mortimer

Stefanie A Mortimer

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Stefanie A Mortimer

Stefanie A Mortimer

Publications by authors named "Stefanie A Mortimer"

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17Publications

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Insights into RNA structure and function from genome-wide studies.

Nat Rev Genet 2014 Jul 13;15(7):469-79. Epub 2014 May 13.

1] Department of Molecular and Cell Biology, University of California, Berkeley. [2] Howard Hughes Medical Institute, University of California, Berkeley. [3] Department of Chemistry, University of California, Berkeley, California 94720, USA. [4] Physical Biosciences Division, Lawrence Berkeley National Laboratory, Berkeley, California 94720, USA.

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http://dx.doi.org/10.1038/nrg3681DOI Listing
July 2014

Two RNA-binding motifs in eIF3 direct HCV IRES-dependent translation.

Nucleic Acids Res 2013 Aug 13;41(15):7512-21. Epub 2013 Jun 13.

Department of Molecular and Cell Biology, University of California, Berkeley, CA 94720, USA, Physical Biosciences Division, Lawrence Berkeley National Laboratory, Berkeley, CA 94720, USA, Howard Hughes Medical Institute, University of California, Berkeley, CA 94720, USA, Life Sciences Division, Lawrence Berkeley National Laboratory, Berkeley, CA 94720, USA and Department of Chemistry, University of California, Berkeley, CA 94720, USA.

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http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3753635PMC
http://dx.doi.org/10.1093/nar/gkt510DOI Listing
August 2013

Unconventional miR-122 binding stabilizes the HCV genome by forming a trimolecular RNA structure.

Nucleic Acids Res 2013 Apr 14;41(7):4230-40. Epub 2013 Feb 14.

Department of Molecular and Cell Biology, University of California, Berkeley, CA 94720, USA.

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http://dx.doi.org/10.1093/nar/gkt075DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3627571PMC
April 2013

SHAPE-Seq: High-Throughput RNA Structure Analysis.

Curr Protoc Chem Biol 2012 Dec;4(4):275-97

Department of Molecular and Cell Biology, University of California, Berkeley, California.

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http://dx.doi.org/10.1002/9780470559277.ch120019DOI Listing
December 2012

Modeling and automation of sequencing-based characterization of RNA structure.

Proc Natl Acad Sci U S A 2011 Jul 3;108(27):11069-74. Epub 2011 Jun 3.

Department of Bioengineering, University of California, Berkeley, CA 94720, USA.

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http://www.pnas.org/cgi/doi/10.1073/pnas.1106541108
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http://dx.doi.org/10.1073/pnas.1106541108DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3131376PMC
July 2011

Time-resolved RNA SHAPE chemistry: quantitative RNA structure analysis in one-second snapshots and at single-nucleotide resolution.

Nat Protoc 2009 10;4(10):1413-21. Epub 2009 Sep 10.

Department of Chemistry, University of North Carolina, Chapel Hill, North Carolina, USA.

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http://dx.doi.org/10.1038/nprot.2009.126DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4950915PMC
October 2009

C2'-endo nucleotides as molecular timers suggested by the folding of an RNA domain.

Proc Natl Acad Sci U S A 2009 Sep 26;106(37):15622-7. Epub 2009 Aug 26.

Department of Chemistry, University of North Carolina, Chapel Hill, NC 27599-3290, USA.

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http://dx.doi.org/10.1073/pnas.0901319106DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2747169PMC
September 2009

Influence of nucleotide identity on ribose 2'-hydroxyl reactivity in RNA.

RNA 2009 Jul 20;15(7):1314-21. Epub 2009 May 20.

Department of Chemistry, University of North Carolina, Chapel Hill, North Carolina 27599, USA.

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http://dx.doi.org/10.1261/rna.1536209DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2704086PMC
July 2009

Quantitative analysis of RNA solvent accessibility by N-silylation of guanosine.

Biochemistry 2009 Mar;48(10):2109-14

Department of Chemistry, University of North Carolina, Chapel Hill, North Carolina 27599-3290, USA.

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http://dx.doi.org/10.1021/bi801939gDOI Listing
March 2009

Time-resolved RNA SHAPE chemistry.

J Am Chem Soc 2008 Dec;130(48):16178-80

Department of Chemistry, University of North Carolina, Chapel Hill, North Carolina 27599-3290, USA.

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http://dx.doi.org/10.1021/ja8061216DOI Listing
December 2008

Slow conformational dynamics at C2'-endo nucleotides in RNA.

J Am Chem Soc 2008 Jul 18;130(28):8884-5. Epub 2008 Jun 18.

Department of Chemistry, University of North Carolina, Chapel Hill, North Carolina 27599-3290, USA.

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http://dx.doi.org/10.1021/ja802691eDOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4501255PMC
July 2008

A fast-acting reagent for accurate analysis of RNA secondary and tertiary structure by SHAPE chemistry.

J Am Chem Soc 2007 Apr 17;129(14):4144-5. Epub 2007 Mar 17.

Department of Chemistry, University of North Carolina, Chapel Hill, North Carolina 27599-3290, USA.

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http://dx.doi.org/10.1021/ja0704028DOI Listing
April 2007