Publications by authors named "Stefan Wyder"

26Publications

Differential gene expression profiling of one- and two-dimensional apogamous gametophytes of the fern Dryopteris affinis ssp. affinis.

Plant Physiol Biochem 2020 Mar 18;148:302-311. Epub 2020 Jan 18.

Department of Plant and Microbial Biology & Zurich-Basel Plant Science Center, University of Zurich, Zollikerstrasse 107, CH-8008, Zurich, Switzerland.

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http://dx.doi.org/10.1016/j.plaphy.2020.01.021DOI Listing
March 2020

Consistent Reanalysis of Genome-wide Imprinting Studies in Plants Using Generalized Linear Models Increases Concordance across Datasets.

Sci Rep 2019 02 4;9(1):1320. Epub 2019 Feb 4.

Department of Plant and Microbial Biology & Zurich-Basel Plant Science Center, University of Zurich, Zollikerstrasse 107, CH-8008, Zurich, Switzerland.

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http://dx.doi.org/10.1038/s41598-018-36768-4DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6362150PMC
February 2019

Probing the evolutionary robustness of two repurposed drugs targeting iron uptake in .

Evol Med Public Health 2018 10;2018(1):246-259. Epub 2018 Sep 10.

Department of Plant and Microbial Biology, University of Zurich, Zurich, Switzerland.

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https://academic.oup.com/emph/advance-article/doi/10.1093/em
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http://dx.doi.org/10.1093/emph/eoy026DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6234326PMC
September 2018

Environmental determinants of pyoverdine production, exploitation and competition in natural Pseudomonas communities.

Environ Microbiol 2018 10 16;20(10):3629-3642. Epub 2018 Aug 16.

Department of Plant and Microbial Biology, University of Zurich, Zurich, Switzerland.

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http://dx.doi.org/10.1111/1462-2920.14355DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6824905PMC
October 2018

Siderophore cheating and cheating resistance shape competition for iron in soil and freshwater Pseudomonas communities.

Nat Commun 2017 09 4;8(1):414. Epub 2017 Sep 4.

Department of Plant and Microbial Biology, University of Zurich, Winterthurerstrasse 190, 8057, Zurich, Switzerland.

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http://dx.doi.org/10.1038/s41467-017-00509-4DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5583256PMC
September 2017

The STRING database in 2017: quality-controlled protein-protein association networks, made broadly accessible.

Nucleic Acids Res 2017 01 18;45(D1):D362-D368. Epub 2016 Oct 18.

Institute of Molecular Life Sciences and Swiss Institute of Bioinformatics, University of Zurich, 8057 Zurich, Switzerland

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http://dx.doi.org/10.1093/nar/gkw937DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5210637PMC
January 2017

STRING v10: protein-protein interaction networks, integrated over the tree of life.

Nucleic Acids Res 2015 Jan 28;43(Database issue):D447-52. Epub 2014 Oct 28.

Institute of Molecular Life Sciences and Swiss Institute of Bioinformatics, University of Zurich, 8057 Zurich, Switzerland

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http://dx.doi.org/10.1093/nar/gku1003DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4383874PMC
January 2015

The FgfrL1 receptor is required for development of slow muscle fibers.

Dev Biol 2014 Oct 27;394(2):228-41. Epub 2014 Aug 27.

Department of Clinical Research, University of Bern, 3010 Bern, Switzerland; Department of Rheumatology, University Hospital, 3010 Bern, Switzerland. Electronic address:

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https://linkinghub.elsevier.com/retrieve/pii/S00121606140040
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http://dx.doi.org/10.1016/j.ydbio.2014.08.016DOI Listing
October 2014

Functional and evolutionary insights from the genomes of three parasitoid Nasonia species.

Authors:
John H Werren Stephen Richards Christopher A Desjardins Oliver Niehuis Jürgen Gadau John K Colbourne John H Werren Stephen Richards Christopher A Desjardins Oliver Niehuis Jürgen Gadau John K Colbourne Leo W Beukeboom Claude Desplan Christine G Elsik Cornelis J P Grimmelikhuijzen Paul Kitts Jeremy A Lynch Terence Murphy Deodoro C S G Oliveira Christopher D Smith Louis van de Zande Kim C Worley Evgeny M Zdobnov Maarten Aerts Stefan Albert Victor H Anaya Juan M Anzola Angel R Barchuk Susanta K Behura Agata N Bera May R Berenbaum Rinaldo C Bertossa Márcia M G Bitondi Seth R Bordenstein Peer Bork Erich Bornberg-Bauer Marleen Brunain Giuseppe Cazzamali Lesley Chaboub Joseph Chacko Dean Chavez Christopher P Childers Jeong-Hyeon Choi Michael E Clark Charles Claudianos Rochelle A Clinton Andrew G Cree Alexandre S Cristino Phat M Dang Alistair C Darby Dirk C de Graaf Bart Devreese Huyen H Dinh Rachel Edwards Navin Elango Eran Elhaik Olga Ermolaeva Jay D Evans Sylvain Foret Gerald R Fowler Daniel Gerlach Joshua D Gibson Donald G Gilbert Dan Graur Stefan Gründer Darren E Hagen Yi Han Frank Hauser Da Hultmark Henry C Hunter Gregory D D Hurst Shalini N Jhangian Huaiyang Jiang Reed M Johnson Andrew K Jones Thomas Junier Tatsuhiko Kadowaki Albert Kamping Yuri Kapustin Bobak Kechavarzi Jaebum Kim Jay Kim Boris Kiryutin Tosca Koevoets Christie L Kovar Evgenia V Kriventseva Robert Kucharski Heewook Lee Sandra L Lee Kristin Lees Lora R Lewis David W Loehlin John M Logsdon Jacqueline A Lopez Ryan J Lozado Donna Maglott Ryszard Maleszka Anoop Mayampurath Danielle J Mazur Marcella A McClure Andrew D Moore Margaret B Morgan Jean Muller Monica C Munoz-Torres Donna M Muzny Lynne V Nazareth Susanne Neupert Ngoc B Nguyen Francis M F Nunes John G Oakeshott Geoffrey O Okwuonu Bart A Pannebakker Vikas R Pejaver Zuogang Peng Stephen C Pratt Reinhard Predel Ling-Ling Pu Hilary Ranson Rhitoban Raychoudhury Andreas Rechtsteiner Justin T Reese Jeffrey G Reid Megan Riddle Hugh M Robertson Jeanne Romero-Severson Miriam Rosenberg Timothy B Sackton David B Sattelle Helge Schlüns Thomas Schmitt Martina Schneider Andreas Schüler Andrew M Schurko David M Shuker Zilá L P Simões Saurabh Sinha Zachary Smith Victor Solovyev Alexandre Souvorov Andreas Springauf Elisabeth Stafflinger Deborah E Stage Mario Stanke Yoshiaki Tanaka Arndt Telschow Carol Trent Selina Vattathil Eveline C Verhulst Lumi Viljakainen Kevin W Wanner Robert M Waterhouse James B Whitfield Timothy E Wilkes Michael Williamson Judith H Willis Florian Wolschin Stefan Wyder Takuji Yamada Soojin V Yi Courtney N Zecher Lan Zhang Richard A Gibbs

Expression profiles of urbilaterian genes uniquely shared between honey bee and vertebrates.

BMC Genomics 2009 Jan 12;10:17. Epub 2009 Jan 12.

Department of Applied Biological Sciences, School of Agricultural Sciences, Nagoya University, Chikusa, Nagoya 464-8601, Japan.

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http://dx.doi.org/10.1186/1471-2164-10-17DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2656531PMC
January 2009

The genome of the model beetle and pest Tribolium castaneum.

Authors:
Stephen Richards Richard A Gibbs George M Weinstock Susan J Brown Robin Denell Richard W Beeman Richard Gibbs Richard W Beeman Susan J Brown Gregor Bucher Markus Friedrich Cornelis J P Grimmelikhuijzen Martin Klingler Marce Lorenzen Stephen Richards Siegfried Roth Reinhard Schröder Diethard Tautz Evgeny M Zdobnov Donna Muzny Richard A Gibbs George M Weinstock Tony Attaway Stephanie Bell Christian J Buhay Mimi N Chandrabose Dean Chavez Kerstin P Clerk-Blankenburg Andrew Cree Marvin Dao Clay Davis Joseph Chacko Huyen Dinh Shannon Dugan-Rocha Gerald Fowler Toni T Garner Jeffrey Garnes Andreas Gnirke Alica Hawes Judith Hernandez Sandra Hines Michael Holder Jennifer Hume Shalini N Jhangiani Vandita Joshi Ziad Mohid Khan LaRonda Jackson Christie Kovar Andrea Kowis Sandra Lee Lora R Lewis Jon Margolis Margaret Morgan Lynne V Nazareth Ngoc Nguyen Geoffrey Okwuonu David Parker Stephen Richards San-Juana Ruiz Jireh Santibanez Joël Savard Steven E Scherer Brian Schneider Erica Sodergren Diethard Tautz Selina Vattahil Donna Villasana Courtney S White Rita Wright Yoonseong Park Richard W Beeman Jeff Lord Brenda Oppert Marce Lorenzen Susan Brown Liangjiang Wang Joël Savard Diethard Tautz Stephen Richards George Weinstock Richard A Gibbs Yue Liu Kim Worley George Weinstock Christine G Elsik Justin T Reese Eran Elhaik Giddy Landan Dan Graur Peter Arensburger Peter Atkinson Richard W Beeman Jim Beidler Susan J Brown Jeffery P Demuth Douglas W Drury Yu-Zhou Du Haruhiko Fujiwara Marce Lorenzen Vincenza Maselli Mizuko Osanai Yoonseong Park Hugh M Robertson Zhijian Tu Jian-jun Wang Suzhi Wang Stephen Richards Henry Song Lan Zhang Erica Sodergren Doreen Werner Mario Stanke Burkhard Morgenstern Victor Solovyev Peter Kosarev Garth Brown Hsiu-Chuan Chen Olga Ermolaeva Wratko Hlavina Yuri Kapustin Boris Kiryutin Paul Kitts Donna Maglott Kim Pruitt Victor Sapojnikov Alexandre Souvorov Aaron J Mackey Robert M Waterhouse Stefan Wyder Evgeny M Zdobnov Evgeny M Zdobnov Stefan Wyder Evgenia V Kriventseva Tatsuhiko Kadowaki Peer Bork Manuel Aranda Riyue Bao Anke Beermann Nicola Berns Renata Bolognesi François Bonneton Daniel Bopp Susan J Brown Gregor Bucher Thomas Butts Arnaud Chaumot Robin E Denell David E K Ferrier Markus Friedrich Cassondra M Gordon Marek Jindra Martin Klingler Que Lan H Michael G Lattorff Vincent Laudet Cornelia von Levetsow Zhenyi Liu Rebekka Lutz Jeremy A Lynch Rodrigo Nunes da Fonseca Nico Posnien Rolf Reuter Siegfried Roth Joël Savard Johannes B Schinko Christian Schmitt Michael Schoppmeier Reinhard Schröder Teresa D Shippy Franck Simonnet Henrique Marques-Souza Diethard Tautz Yoshinori Tomoyasu Jochen Trauner Maurijn Van der Zee Michel Vervoort Nadine Wittkopp Ernst A Wimmer Xiaoyun Yang Andrew K Jones David B Sattelle Paul R Ebert David Nelson Jeffrey G Scott Richard W Beeman Subbaratnam Muthukrishnan Karl J Kramer Yasuyuki Arakane Richard W Beeman Qingsong Zhu David Hogenkamp Radhika Dixit Brenda Oppert Haobo Jiang Zhen Zou Jeremy Marshall Elena Elpidina Konstantin Vinokurov Cris Oppert Zhen Zou Jay Evans Zhiqiang Lu Picheng Zhao Niranji Sumathipala Boran Altincicek Andreas Vilcinskas Michael Williams Dan Hultmark Charles Hetru Haobo Jiang Cornelis J P Grimmelikhuijzen Frank Hauser Giuseppe Cazzamali Michael Williamson Yoonseong Park Bin Li Yoshiaki Tanaka Reinhard Predel Susanne Neupert Joachim Schachtner Peter Verleyen Florian Raible Peer Bork Markus Friedrich Kimberly K O Walden Hugh M Robertson Sergio Angeli Sylvain Forêt Gregor Bucher Stefan Schuetz Ryszard Maleszka Ernst A Wimmer Richard W Beeman Marce Lorenzen Yoshinori Tomoyasu Sherry C Miller Daniela Grossmann Gregor Bucher

Nature 2008 Apr 23;452(7190):949-55. Epub 2008 Mar 23.

Human Genome Sequencing Center, Baylor College of Medicine, One Baylor Plaza, Houston, Texas 77030, USA.

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http://dx.doi.org/10.1038/nature06784DOI Listing
April 2008

Quantification of ortholog losses in insects and vertebrates.

Genome Biol 2007 ;8(11):R242

Department of Genetic Medicine and Development, University of Geneva Medical School, 1211 Geneva, Switzerland.

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http://dx.doi.org/10.1186/gb-2007-8-11-r242DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2258195PMC
August 2008

Genome sequence of Aedes aegypti, a major arbovirus vector.

Science 2007 Jun 17;316(5832):1718-23. Epub 2007 May 17.

Institute for Genomic Research, 9712 Medical Center Drive, Rockville, MD 20850, USA.

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http://dx.doi.org/10.1126/science.1138878DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2868357PMC
June 2007

Cloning, characterization and analysis by RNA interference of various genes of the Chelonus inanitus polydnavirus.

J Gen Virol 2005 Apr;86(Pt 4):973-983

Institute of Cell Biology, University of Berne, Baltzerstrasse 4, CH-3012 Bern, Switzerland.

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http://dx.doi.org/10.1099/vir.0.80833-0DOI Listing
April 2005

Stage-dependent expression of Chelonus inanitus polydnavirus genes in the host and the parasitoid.

J Insect Physiol 2004 Nov;50(11):1015-26

Institute of Cell Biology, University of Berne, Baltzerstrasse 4, CH-3012 Bern, Switzerland.

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http://dx.doi.org/10.1016/j.jinsphys.2004.09.002DOI Listing
November 2004

Fate of polydnavirus DNA of the egg-larval parasitoid Chelonus inanitus in the host Spodoptera littoralis.

J Insect Physiol 2003 May;49(5):491-500

Institute of Cell Biology, University of Berne, Baltzerstrasse 4, CH-3012 Berne, Switzerland.

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http://dx.doi.org/10.1016/s0022-1910(03)00056-8DOI Listing
May 2003

Ovary development and polydnavirus morphogenesis in the parasitic wasp Chelonus inanitus. I. Ovary morphogenesis, amplification of viral DNA and ecdysteroid titres.

J Gen Virol 2003 May;84(Pt 5):1141-1150

Institute of Cell Biology, University of Berne, Baltzerstrasse 4, CH-3012 Bern, Switzerland.

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http://dx.doi.org/10.1099/vir.0.18832-0DOI Listing
May 2003