Stefan Simm

Stefan Simm

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Stefan Simm

Stefan Simm

Publications by authors named "Stefan Simm"

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Co-orthologues of ribosome biogenesis factors in A. thaliana are differentially regulated by transcription factors.

Plant Cell Rep 2019 Aug 13;38(8):937-949. Epub 2019 May 13.

Institute for Molecular Biosciences, Goethe University, Biocenter/Max von Laue Straße 9/N200/R3.02, 60438, Frankfurt am Main, Germany.

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http://dx.doi.org/10.1007/s00299-019-02416-yDOI Listing
August 2019

Regulation of two GTPases Toc159 and Toc34 in the translocon of the outer envelope of chloroplasts.

Biochim Biophys Acta Proteins Proteom 2019 Jun 3;1867(6):627-636. Epub 2019 Jan 3.

Department of Molecular Cell Biology of Plants, Goethe University, Max-von-Laue Str. 9, D-60438 Frankfurt, Germany; Frankfurt Institute for Advanced Studies, Ruth-Moufang-Straße 1, D-60438 Frankfurt, Germany; Cluster of Excellence Frankfurt, Goethe University, D-60438 Frankfurt, Germany; Buchmann Institute for Molecular Life Sciences, Goethe University, Max-von-Laue Str. 15, D-60438 Frankfurt, Germany. Electronic address:

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http://dx.doi.org/10.1016/j.bbapap.2019.01.002DOI Listing
June 2019

The intracellular distribution of the components of the GET system in vascular plants.

Biochim Biophys Acta Mol Cell Res 2019 Jun 21. Epub 2019 Jun 21.

Institute for Molecular Biosciences, Goethe University Frankfurt am Main, Max-von-Laue Str. 9, D-60438 Frankfurt, Germany; Buchman Institute for Molecular Life Sciences, Goethe University Frankfurt am Main, Max-von-Laue Str. 15, D-60438 Frankfurt, Germany; Frankfurt Institute of Advanced Studies, Ruth-Moufang-Straße 1, D-60438 Frankfurt, Germany. Electronic address:

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http://dx.doi.org/10.1016/j.bbamcr.2019.06.012DOI Listing
June 2019

The repressor and co-activator HsfB1 regulates the major heat stress transcription factors in tomato.

Plant Cell Environ 2019 Mar 11;42(3):874-890. Epub 2018 Oct 11.

Department of Biosciences, Molecular Cell Biology of Plants, Goethe University, Frankfurt am Main, Germany.

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http://dx.doi.org/10.1111/pce.13434DOI Listing
March 2019

Plant-specific ribosome biogenesis factors in Arabidopsis thaliana with essential function in rRNA processing.

Nucleic Acids Res 2019 Feb;47(4):1880-1895

Institute for Molecular Biosciences, Goethe University Frankfurt, Max von Laue Str. 9, D-60438 Frankfurt, Germany.

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https://academic.oup.com/nar/article/47/4/1880/5253684
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http://dx.doi.org/10.1093/nar/gky1261DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6393314PMC
February 2019

HEATSTER: A Database and Web Server for Identification and Classification of Heat Stress Transcription Factors in Plants.

Bioinform Biol Insights 2019 7;13:1177932218821365. Epub 2019 Jan 7.

Department of Biosciences, Inst. of Cell Biology and Neuroscience, Applied Bioinformatics Group, Goethe University, Frankfurt am Main, Germany.

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http://dx.doi.org/10.1177/1177932218821365DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6327235PMC
January 2019

Late ribosomal protein localization in differs to that in .

FEBS Open Bio 2018 Sep 25;8(9):1437-1444. Epub 2018 Jul 25.

Institute for Molecular Biosciences Goethe University Frankfurt am Main Germany.

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http://dx.doi.org/10.1002/2211-5463.12487DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6120241PMC
September 2018

The coupling of transcriptome and proteome adaptation during development and heat stress response of tomato pollen.

BMC Genomics 2018 Jun 8;19(1):447. Epub 2018 Jun 8.

Department of Biosciences, Molecular Cell Biology of Plants, Goethe University, D-60438, Frankfurt am Main, Germany.

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http://dx.doi.org/10.1186/s12864-018-4824-5DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5994098PMC
June 2018

Identification of the TXNIP IRES and characterization of the impact of regulatory IRES trans-acting factors.

Biochim Biophys Acta Gene Regul Mech 2018 Feb 31;1861(2):147-157. Epub 2018 Jan 31.

Institute of Biochemistry I, Faculty of Medicine, Goethe-University Frankfurt, 60590 Frankfurt, Germany. Electronic address:

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http://dx.doi.org/10.1016/j.bbagrm.2018.01.010DOI Listing
February 2018

Survey of Genes Involved in Biosynthesis, Transport, and Signaling of Phytohormones with Focus on .

Bioinform Biol Insights 2016 26;10:185-207. Epub 2016 Sep 26.

Buchmann Institute for Molecular Life Sciences, Goethe University Frankfurt, Frankfurt am Main, Germany.; Cluster of Excellence Macromolecular Complexes, Institute for Molecular Cell Biology of Plants, Frankfurt am Main, Germany.

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http://dx.doi.org/10.4137/BBI.S38425DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5038615PMC
September 2016

50 years of amino acid hydrophobicity scales: revisiting the capacity for peptide classification.

Biol Res 2016 Jul 4;49(1):31. Epub 2016 Jul 4.

Department of Biosciences, Molecular Cell Biology of Plants, Cluster of Excellence Frankfurt (CEF) and Buchmann Institute of Molecular Life Sciences (BMLS), Goethe University, Max von Laue Str. 9, 60438, Frankfurt/Main, Germany.

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http://dx.doi.org/10.1186/s40659-016-0092-5DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4932767PMC
July 2016

HsfA2 Controls the Activity of Developmentally and Stress-Regulated Heat Stress Protection Mechanisms in Tomato Male Reproductive Tissues.

Plant Physiol 2016 04 25;170(4):2461-77. Epub 2016 Feb 25.

Department of Biosciences, Molecular Cell Biology of Plants, Goethe University, D-60438 Frankfurt am Main, Germany (S.F., A.M., S.S., Y.H., P.P., S.K.M., E.S., K.-D.S.);Cluster of Excellence Frankfurt, Goethe University, D-60438 Frankfurt am Main, Germany (S.S., E.S.);Plant Breeding, Wageningen University, Wageningen 6708PB, The Netherlands (M.J.P., A.B.);Leibniz Institute of Plant Biochemistry, D-06120 Halle (Saale), Germany (B.T., K.-D.S.);Max Planck Institute for Plant Breeding Research, D-50829 Cologne, Germany (K.T.); andBuchmann Institute for Molecular Life Sciences, Goethe University, D-60438 Frankfurt am Main, Germany (E.S.)

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http://dx.doi.org/10.1104/pp.15.01913DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4825147PMC
April 2016

The membrane proteome of male gametophyte in Solanum lycopersicum.

J Proteomics 2016 Jan 9;131:48-60. Epub 2015 Oct 9.

Goethe University, Department of Biosciences, Molecular Cell Biology of Plants, Frankfurt/Main, Germany; SPOT-ITN Consortium; Goethe University, Cluster of Excellence Frankfurt, Frankfurt/Main, Germany; Goethe University, Buchmann Institute of Molecular Life Sciences, Frankfurt/Main, Germany. Electronic address:

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http://dx.doi.org/10.1016/j.jprot.2015.10.009DOI Listing
January 2016

Chaperone network composition in Solanum lycopersicum explored by transcriptome profiling and microarray meta-analysis.

Plant Cell Environ 2015 Apr 1;38(4):693-709. Epub 2014 Oct 1.

Department of Biosciences, Molecular Cell Biology of Plants, Goethe University, 60438, Frankfurt/Main, Germany; Cluster of Excellence Frankfurt, Goethe University, 60438, Frankfurt/Main, Germany.

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http://dx.doi.org/10.1111/pce.12426DOI Listing
April 2015

The composition of the global and feature specific cyanobacterial core-genomes.

Front Microbiol 2015 19;6:219. Epub 2015 Mar 19.

Department of Biosciences, Molecular Cell Biology of Plants, Goethe University Frankfurt am Main, Germany ; Cluster of Excellence Frankfurt, Goethe University Frankfurt am Main, Germany ; Center of Membrane Proteomics, Goethe University Frankfurt am Main, Germany ; Buchmann Institute of Molecular Life Sciences, Goethe University Frankfurt am Main, Germany.

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http://dx.doi.org/10.3389/fmicb.2015.00219DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4365693PMC
April 2015

Identification and Expression Analysis of Ribosome Biogenesis Factor Co-orthologs in Solanum lycopersicum.

Bioinform Biol Insights 2015 4;9:1-17. Epub 2015 Feb 4.

Department of Biosciences, Molecular Cell Biology of Plants, Goethe University, Frankfurt/Main, Germany. ; Center of Membrane Proteomics, Goethe University, Frankfurt/Main, Germany. ; Buchmann Institute for Molecular Life Sciences (BMLS), Goethe University, Frankfurt/Main, Germany.

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http://dx.doi.org/10.4137/BBI.S20751DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4325683PMC
February 2015

The complexity of vesicle transport factors in plants examined by orthology search.

PLoS One 2014 20;9(5):e97745. Epub 2014 May 20.

Department of Biosciences Molecular Cell Biology of Plants; Cluster of Excellence Frankfurt; Center of Membrane Proteomics; Goethe University Frankfurt, Frankfurt/Main, Germany.

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http://journals.plos.org/plosone/article?id=10.1371/journal.pone.0097745PLOS
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4028247PMC
January 2015

The association of late-acting snoRNPs with human pre-ribosomal complexes requires the RNA helicase DDX21.

Nucleic Acids Res 2015 Jan 4;43(1):553-64. Epub 2014 Dec 4.

Institute for Molecular Biology, Göttingen University Medical Department, 37073 Göttingen, Germany Institute for Molecular Biosciences, Goethe University, 60438 Frankfurt, Germany Cluster of Excellence Macromolecular Complexes, Goethe University, 60438 Frankfurt, Germany Göttingen Centre for Molecular Biosciences, Georg-August-University, 37073 Göttingen, Germany

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http://dx.doi.org/10.1093/nar/gku1291DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4288182PMC
January 2015

A pre-ribosomal RNA interaction network involving snoRNAs and the Rok1 helicase.

RNA 2014 Aug 19;20(8):1173-82. Epub 2014 Jun 19.

Centre for Biochemistry and Molecular Cell Biology, Georg-August-University, 37073 Göttingen, Germany Cluster of Excellence Frankfurt, Goethe University, 60438 Frankfurt, Germany Göttingen Center for Molecular Biosciences, Georg-August-University, 37073 Göttingen, Germany.

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http://dx.doi.org/10.1261/rna.044669.114DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4105744PMC
August 2014

The evolution of the ribosome biogenesis pathway from a yeast perspective.

Nucleic Acids Res 2014 Feb 14;42(3):1509-23. Epub 2013 Nov 14.

Institute for Cell Biology and Neuroscience, Goethe University, Frankfurt 60438, Germany, Center for Integrative Bioinformatics, Max F Perutz Laboratories, University of Vienna, Medical University of Vienna, Vienna 1030, Austria, Institute for Molecular Biosciences, Goethe University, Frankfurt 60438, Germany, Faculty of Computer Science, University of Vienna, Vienna 1030, Austria, Cluster of Excellence Macromolecular Complexes, Goethe University, Frankfurt 60438, Germany, Department of Biochemistry I, Universitätsmedizin Göttingen, Göttingen 37073, Germany and Center of Membrane Proteomics, Goethe University, Frankfurt 60438, Germany.

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http://dx.doi.org/10.1093/nar/gkt1137DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3919561PMC
February 2014

40S ribosome biogenesis co-factors are essential for gametophyte and embryo development.

PLoS One 2013 30;8(1):e54084. Epub 2013 Jan 30.

Department of Biosciences, Molecular Cell Biology of Plants, Goethe University, Frankfurt/Main, Germany.

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http://journals.plos.org/plosone/article?id=10.1371/journal.pone.0054084PLOS
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3559688PMC
September 2013

The protein translocation systems in plants - composition and variability on the example of Solanum lycopersicum.

BMC Genomics 2013 Mar 18;14:189. Epub 2013 Mar 18.

Department of Biosciences, Molecular Cell Biology of Plants, Goethe University, Frankfurt/Main, 60438, Germany.

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http://dx.doi.org/10.1186/1471-2164-14-189DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3610429PMC
March 2013

Chloroplast import signals: the length requirement for translocation in vitro and in vivo.

J Mol Biol 2010 Sep 3;402(3):510-23. Epub 2010 Aug 3.

Molecular Cell Biology of Plants, Department of Biosciences, Center for Membrane Proteomics and Cluster of Excellence Macromolecular Complexes, Goethe University Frankfurt, Max von Laue Strasse 9/N200/R3.02, Frankfurt, Germany.

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http://dx.doi.org/10.1016/j.jmb.2010.07.052DOI Listing
September 2010