Publications by authors named "Stefan J Green"

100Publications

Antimicrobial peptide cocktail activity in minced turkey meat.

Food Microbiol 2020 Dec 21;92:103580. Epub 2020 Jul 21.

Institute of Biochemistry, Food Science and Nutrition, The Robert H. Smith Faculty of Agriculture, Food and Environment, The Hebrew University of Jerusalem, Rehovot, 76100, Israel. Electronic address:

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http://dx.doi.org/10.1016/j.fm.2020.103580DOI Listing
December 2020

The gut microbiota may be a novel pathogenic mechanism in loosening of orthopedic implants in rats.

FASEB J 2020 Nov 15;34(11):14302-14317. Epub 2020 Sep 15.

Department of Cell & Molecular Medicine, Rush University Medical Center, Chicago, IL, USA.

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http://dx.doi.org/10.1096/fj.202001364RDOI Listing
November 2020

The Microbiome Composition of a Man's Penis Predicts Incident Bacterial Vaginosis in His Female Sex Partner With High Accuracy.

Front Cell Infect Microbiol 2020 4;10:433. Epub 2020 Aug 4.

Division of Epidemiology and Biostatistics, School of Public Health, University of Illinois at Chicago, Chicago, IL, United States.

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http://dx.doi.org/10.3389/fcimb.2020.00433DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC7438843PMC
August 2020

Microbial Communities of Stored Product Mites: Variation by Species and Population.

Microb Ecol 2020 Aug 27. Epub 2020 Aug 27.

Department of Ecology and Evolutionary Biology, University of Michigan, 3600 Varsity Drive, Ann Arbor, MI, 48109, USA.

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http://dx.doi.org/10.1007/s00248-020-01581-yDOI Listing
August 2020

Vaginal and Penile Microbiome Associations with HSV-2 in Women and their Male Sex Partners.

J Infect Dis 2020 Aug 21. Epub 2020 Aug 21.

Genome Research Core, University of Illinois at Chicago School of Medicine, Chicago, USA.

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http://dx.doi.org/10.1093/infdis/jiaa529DOI Listing
August 2020

Host Genetic Factors Associated with Vaginal Microbiome Composition in Kenyan Women.

mSystems 2020 Jul 28;5(4). Epub 2020 Jul 28.

Center for Global Oncology, Institute of Global Health, Northwestern University Feinberg School of Medicine, Chicago, Illinois, USA.

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http://dx.doi.org/10.1128/mSystems.00502-20DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC7394359PMC
July 2020

Metabolic Profiling of Blood and Urine for Exploring the Functional Role of the Microbiota in Human Health.

Biol Res Nurs 2020 Oct 29;22(4):449-457. Epub 2020 Jul 29.

Department of Biobehavioral Health Science, College of Nursing, University of Illinois at Chicago, Chicago, IL, USA.

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http://dx.doi.org/10.1177/1099800420941080DOI Listing
October 2020

Microglia, inflammation and gut microbiota responses in a progressive monkey model of Parkinson's disease: A case series.

Neurobiol Dis 2020 Oct 24;144:105027. Epub 2020 Jul 24.

Department of Neuroscience and Center for Translational Research in Neurodegenerative Disease, University of Florida College of Medicine, Gainesville, FL, USA; Department of Physiology, Emory University, Atlanta, GA, USA.

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http://dx.doi.org/10.1016/j.nbd.2020.105027DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC7484290PMC
October 2020

Correction to: The microbiome as a biosensor: functional profiles elucidate hidden stress in hosts.

Microbiome 2020 Jun 30;8(1):101. Epub 2020 Jun 30.

Institute of Soil, Water and Environmental Sciences, Agricultural Research Organization-Volcani Center, 7528809, Rishon Lezion, Israel.

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http://dx.doi.org/10.1186/s40168-020-00883-0DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC7325669PMC
June 2020

The microbiome as a biosensor: functional profiles elucidate hidden stress in hosts.

Microbiome 2020 May 21;8(1):71. Epub 2020 May 21.

Institute of Soil, Water and Environmental Sciences, Agricultural Research Organization-Volcani Center, 7528809, Rishon Lezion, Israel.

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http://dx.doi.org/10.1186/s40168-020-00850-9DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC7243336PMC
May 2020

Sleep Health Should be Included as a Therapeutic Target in the Treatment of HIV.

AIDS Res Hum Retroviruses 2020 08 16;36(8):631. Epub 2020 Jun 16.

Sequencing Core, Research Resources Center, University of Illinois at Chicago, Chicago, Illinois, USA.

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http://dx.doi.org/10.1089/AID.2020.0094DOI Listing
August 2020

Deep DNA metagenomic sequencing reveals oral microbiome divergence between monozygotic twins discordant for multiple sclerosis severity.

J Neuroimmunol 2020 Jun 7;343:577237. Epub 2020 Apr 7.

Department of Anesthesiology, University of Illinois, Chicago, IL, USA; Jesse Brown VA Medical Center, Chicago, IL, USA. Electronic address:

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http://dx.doi.org/10.1016/j.jneuroim.2020.577237DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC7301750PMC
June 2020

Clinical care is evolving: The microbiome for advanced practice nurses.

J Am Assoc Nurse Pract 2020 Apr;32(4):290-292

DNA Services Lab, University of Illinois, Chicago, Illinois.

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http://dx.doi.org/10.1097/JXX.0000000000000379DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC7304310PMC
April 2020

Murine Gut Microbiome Association With Alleles.

Front Immunol 2020 14;11:200. Epub 2020 Feb 14.

Department of Physiology, College of Medicine, University of Kentucky, Lexington, KY, United States.

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http://dx.doi.org/10.3389/fimmu.2020.00200DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC7034241PMC
February 2020

Corrigendum: Detection of respiratory pathogens in clinical samples using metagenomic shotgun sequencing.

J Med Microbiol 2020 01;69(1):146

Division of Pulmonary and Critical Care, Department of Medicine, Northwestern University Feinberg School of Medicine, Chicago, IL, USA.

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http://dx.doi.org/10.1099/jmm.0.001091DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC7176282PMC
January 2020

Faropenem resistance causes in vitro cross-resistance to carbapenems in ESBL-producing Escherichia coli.

Int J Antimicrob Agents 2020 Mar 17;55(3):105902. Epub 2020 Jan 17.

Clinical Microbiology Laboratory, Department of Pathology, NorthShore University HealthSystem, Evanston, Illinois; Department of Pathology, The University of Chicago Pritzker School of Medicine, Chicago, Illinois.

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http://dx.doi.org/10.1016/j.ijantimicag.2020.105902DOI Listing
March 2020

Synergistic effects of APOE and sex on the gut microbiome of young EFAD transgenic mice.

Mol Neurodegener 2019 12 20;14(1):47. Epub 2019 Dec 20.

Department of Anatomy and Cell Biology, College of Medicine, University of Illinois at Chicago, Chicago, IL, 60612, USA.

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http://dx.doi.org/10.1186/s13024-019-0352-2DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6923910PMC
December 2019

Effects of tillage practices on soil microbiome and agricultural parameters.

Sci Total Environ 2020 Feb 27;705:135791. Epub 2019 Nov 27.

Institute of Soil, Water and Environmental Sciences, Agricultural Research Organization, Volcani Center, Rishon LeZion 7505101, Israel.

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http://dx.doi.org/10.1016/j.scitotenv.2019.135791DOI Listing
February 2020

Predictors of Obesity among Gut Microbiota Biomarkers in African American Men with and without Diabetes.

Microorganisms 2019 Sep 5;7(9). Epub 2019 Sep 5.

Department of Public Health Sciences, Parkinson School of Health Sciences and Public Health, Loyola University Chicago, Maywood, IL 60153, USA.

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http://dx.doi.org/10.3390/microorganisms7090320DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6780321PMC
September 2019

Reproducible changes in the gut microbiome suggest a shift in microbial and host metabolism during spaceflight.

Microbiome 2019 08 9;7(1):113. Epub 2019 Aug 9.

Center for Sleep and Circadian Biology, Department of Neurobiology, Northwestern University, Evanston, IL, USA.

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http://dx.doi.org/10.1186/s40168-019-0724-4DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6689164PMC
August 2019

Effect of temperature on methane oxidation and community composition in landfill cover soil.

J Ind Microbiol Biotechnol 2019 Oct 17;46(9-10):1283-1295. Epub 2019 Jul 17.

Department of Civil and Materials Engineering, University of Illinois at Chicago, 842 West Taylor Street, Chicago, IL, 60607, USA.

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http://dx.doi.org/10.1007/s10295-019-02217-yDOI Listing
October 2019

Assessment of the impact of different fecal storage protocols on the microbiota diversity and composition: a pilot study.

BMC Microbiol 2019 06 28;19(1):145. Epub 2019 Jun 28.

Digestive Oncology Research Center, Digestive Disease Research Institute, Tehran University of Medical Sciences, Tehran, Iran.

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http://dx.doi.org/10.1186/s12866-019-1519-2DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6599303PMC
June 2019

Deconstructing the Polymerase Chain Reaction II: an improved workflow and effects on artifact formation and primer degeneracy.

PeerJ 2019 14;7:e7121. Epub 2019 Jun 14.

Sequencing Core, Research Resources Center, University of Illinois at Chicago, Chicago, IL, United States of America.

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http://dx.doi.org/10.7717/peerj.7121DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6573857PMC
June 2019

Effect of Dietary Fiber on the Composition of the Murine Dental Microbiome.

Dent J (Basel) 2019 Jun 1;7(2). Epub 2019 Jun 1.

Department of BioMedical Sciences, School of Medicine, Mercer University, Macon, GA 31207, USA.

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http://dx.doi.org/10.3390/dj7020058DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6630570PMC
June 2019

Detection of respiratory pathogens in clinical samples using metagenomic shotgun sequencing.

J Med Microbiol 2019 07 28;68(7):996-1002. Epub 2019 May 28.

Division of Pulmonary and Critical Care, Department of Medicine, Northwestern University Feinberg School of Medicine, Chicago, IL, USA.

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https://www.microbiologyresearch.org/content/journal/jmm/10.
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http://dx.doi.org/10.1099/jmm.0.000968DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6939159PMC
July 2019

Genome Sequence of Marine-Derived sp. Strain F001, a Producer of Akashin A and Diazaquinomycins.

Microbiol Resour Announc 2019 May 9;8(19). Epub 2019 May 9.

Department of Medicinal Chemistry and Pharmacognosy and Center for Biomolecular Sciences, College of Pharmacy, University of Illinois at Chicago, Chicago, Illinois, USA

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http://dx.doi.org/10.1128/MRA.00165-19DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6509518PMC
May 2019

The NASA Twins Study: A multidimensional analysis of a year-long human spaceflight.

Science 2019 04;364(6436)

Northwestern University, Evanston, IL, USA.

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http://dx.doi.org/10.1126/science.aau8650DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC7580864PMC
April 2019

Complete Genome Sequence of a USA100 Methicillin-Resistant Staphylococcus aureus Strain.

Microbiol Resour Announc 2019 Mar 14;8(11). Epub 2019 Mar 14.

Division of Infectious Disease, Department of Medicine, Rush University Medical Center, Chicago, Illinois, USA

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http://dx.doi.org/10.1128/MRA.00006-19DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6424203PMC
March 2019

PCR effects of melting temperature adjustment of individual primers in degenerate primer pools.

PeerJ 2019 4;7:e6570. Epub 2019 Mar 4.

Sequencing Core, Research Resources Center, University of Illinois at Chicago, Chicago, IL, United States of America.

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https://peerj.com/articles/6570
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http://dx.doi.org/10.7717/peerj.6570DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6404654PMC
March 2019

Physical Inaccessibility of a Resistant Starch Shifts Mouse Gut Microbiota to Butyrogenic Firmicutes.

Mol Nutr Food Res 2019 04 27;63(7):e1801012. Epub 2019 Jan 27.

Whistler Center for Carbohydrate Research, Department of Food Science, Purdue University, West Lafayette, IN, 47907, USA.

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http://doi.wiley.com/10.1002/mnfr.201801012
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http://dx.doi.org/10.1002/mnfr.201801012DOI Listing
April 2019

Chronic stress-induced gut dysfunction exacerbates Parkinson's disease phenotype and pathology in a rotenone-induced mouse model of Parkinson's disease.

Neurobiol Dis 2020 02 21;135:104352. Epub 2018 Dec 21.

Department of Internal Medicine, Division of Digestive Diseases, Rush University Medical Center, Chicago, IL, USA; Division of Pharmacology, Utrecht Institute for Pharmaceutical Sciences, Utrecht University, Utrecht, Netherlands. Electronic address:

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http://dx.doi.org/10.1016/j.nbd.2018.12.012DOI Listing
February 2020

Role of TLR4 in the gut-brain axis in Parkinson's disease: a translational study from men to mice.

Gut 2019 05 15;68(5):829-843. Epub 2018 Dec 15.

Division of Pharmacology, Utrecht Institute for Pharmaceutical Sciences, Faculty of Science, Utrecht University, Utrecht, The Netherlands.

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http://dx.doi.org/10.1136/gutjnl-2018-316844DOI Listing
May 2019

Complete Genome Sequence of sp. Strain D7, a Virulent Bacterium Isolated from an Algal Bloom in the North Atlantic.

Microbiol Resour Announc 2018 Nov 15;7(19). Epub 2018 Nov 15.

Department of Plant and Environmental Sciences, Weizmann Institute of Science, Rehovot, Israel.

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http://dx.doi.org/10.1128/MRA.01379-18DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6256486PMC
November 2018

Root microbiome response to treated wastewater irrigation.

Sci Total Environ 2019 Mar 20;655:899-907. Epub 2018 Nov 20.

Institute of Soil, Water and Environmental Sciences, Agricultural Research Organization - Volcani Center, Rishon Lezion 7528809, Israel. Electronic address:

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https://linkinghub.elsevier.com/retrieve/pii/S00489697183460
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http://dx.doi.org/10.1016/j.scitotenv.2018.11.251DOI Listing
March 2019

High Frequency of MYD88 L265P Mutation in Primary Ocular Adnexal Marginal Zone Lymphoma and Its Clinicopathologic Correlation: A Study From a Single Institution.

Arch Pathol Lab Med 2019 04 16;143(4):483-493. Epub 2018 Nov 16.

From the Departments of Pathology (Drs Behdad, Gao, and Raparia; Mr Dittman; Drs Qi, Q Chen, and Y-H Chen) and Ophthalmology (Dr Bryar), Northwestern Memorial Hospital, Northwestern University Feinberg School of Medicine, Chicago, Illinois; Wayne State University School of Medicine, Detroit, Michigan (Dr Zhou); Research Resources Center, University of Illinois at Chicago, Chicago (Dr Green); Department of Pathology, University of Michigan, Ann Arbor (Dr Betz). Dr Zhou is currently at the Department of Ophthalmology, Bascom-Palmer Eye Institute, Miami, Florida. Dr Raparia is currently at the Department of Pathology, Kaiser Permanente, Santa Clara, California.

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http://dx.doi.org/10.5858/arpa.2018-0092-OADOI Listing
April 2019

Considerations When Designing a Microbiome Study: Implications for Nursing Science.

Biol Res Nurs 2019 03 8;21(2):125-141. Epub 2018 Nov 8.

3 Sensory Science and Metabolism Unit, Biobehavioral Branch, Division of Intramural Research, National Institute of Nursing Research, National Institutes of Health, Department of Health and Human Services, Bethesda, MD, USA.

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http://dx.doi.org/10.1177/1099800418811639DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6700895PMC
March 2019

Association of nasal microbiome and asthma control in patients with chronic rhinosinusitis.

Clin Exp Allergy 2018 12 24;48(12):1744-1747. Epub 2018 Sep 24.

Allergy/Immunology Division, Department of Internal Medicine, Rush University Medical Center, Chicago, Illinois.

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http://dx.doi.org/10.1111/cea.13255DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6265059PMC
December 2018

Complete Genome of Micromonospora sp. Strain B006 Reveals Biosynthetic Potential of a Lake Michigan Actinomycete.

J Nat Prod 2018 09 15;81(9):2057-2068. Epub 2018 Aug 15.

Department of Medicinal Chemistry and Pharmacognosy and Center for Biomolecular Sciences, College of Pharmacy , University of Illinois at Chicago , Chicago , Illinois 60607 , United States.

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http://pubs.acs.org/doi/10.1021/acs.jnatprod.8b00394
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http://dx.doi.org/10.1021/acs.jnatprod.8b00394DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6174880PMC
September 2018

Assessing the Efficiency of Cultivation Techniques To Recover Natural Product Biosynthetic Gene Populations from Sediment.

ACS Chem Biol 2018 08 10;13(8):2074-2081. Epub 2018 Jul 10.

German Centre for Infection Research (DZIF), Interfaculty Institute of Microbiology and Infection Medicine Tübingen , University of Tübingen , Auf der Morgenstelle 28 , 72076 Tübingen , Germany.

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http://dx.doi.org/10.1021/acschembio.8b00254DOI Listing
August 2018

Draft Genome Sequence of Muricauda sp. Strain K001 Isolated from a Marine Cyanobacterial Culture.

Genome Announc 2018 May 31;6(22). Epub 2018 May 31.

Department of Cellular Biology, Biological Sciences Institute, University of Brasília, Brasília, Brazil

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http://dx.doi.org/10.1128/genomeA.00451-18DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5981047PMC
May 2018

Making and Sequencing Heavily Multiplexed, High-Throughput 16S Ribosomal RNA Gene Amplicon Libraries Using a Flexible, Two-Stage PCR Protocol.

Methods Mol Biol 2018 ;1783:149-169

DNA Services Facility, Research Resources Center, University of Illinois at Chicago, Chicago, IL, USA.

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http://link.springer.com/10.1007/978-1-4939-7834-2_7
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http://dx.doi.org/10.1007/978-1-4939-7834-2_7DOI Listing
February 2019

Effects of green tea on miRNA and microbiome of oral epithelium.

Sci Rep 2018 04 12;8(1):5873. Epub 2018 Apr 12.

Department of Oral Medicine & Diagnostic Sciences, Center for Molecular Biology of Oral Diseases, College of Dentistry, University of Illinois at Chicago, 801 South Paulina Street, Chicago, IL, USA.

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http://dx.doi.org/10.1038/s41598-018-22994-3DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5897334PMC
April 2018

Human milk oligosaccharides protect against the development of autoimmune diabetes in NOD-mice.

Sci Rep 2018 03 1;8(1):3829. Epub 2018 Mar 1.

Utrecht University, Faculty of Science, Department of Pharmaceutical Sciences, Division of Pharmacology, Utrecht, The Netherlands.

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http://dx.doi.org/10.1038/s41598-018-22052-yDOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5832804PMC
March 2018

Microbial Diversity of Genital Ulcers of HSV-2 Seropositive Women.

Sci Rep 2017 11 13;7(1):15475. Epub 2017 Nov 13.

Division of Epidemiology & Biostatistics, School of Public Health, University of Illinois at Chicago, Chicago, IL, USA.

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http://dx.doi.org/10.1038/s41598-017-15554-8DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5684367PMC
November 2017

Starch-entrapped microsphere fibers improve bowel habit but do not exhibit prebiotic capacity in those with unsatisfactory bowel habits: a phase I, randomized, double-blind, controlled human trial.

Nutr Res 2017 Aug 2;44:27-37. Epub 2017 Jun 2.

Division of Digestive Diseases and Nutrition, Department of Internal Medicine, Rush University Medical Center, 1725 W Harrison St Ste 206, Chicago, IL, USA, 60612. Electronic address:

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http://dx.doi.org/10.1016/j.nutres.2017.05.015DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5580357PMC
August 2017

Investigation of Respiratory Syncytial Virus Outbreak on an Adult Stem Cell Transplant Unit by Use of Whole-Genome Sequencing.

J Clin Microbiol 2017 10 26;55(10):2956-2963. Epub 2017 Jul 26.

Department of Pathology, Northwestern University Feinberg School of Medicine, Chicago, Illinois, USA.

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http://jcm.asm.org/lookup/doi/10.1128/JCM.00360-17
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http://dx.doi.org/10.1128/JCM.00360-17DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5625381PMC
October 2017

Atopic dermatitis and food sensitization in South African toddlers: Role of fiber and gut microbiota.

Ann Allergy Asthma Immunol 2017 06;118(6):742-743.e3

Division of Allergy, Department of Paediatrics and Child Health, University of Cape Town, Cape Town, South Africa; In-FLAME, the International Inflammation Network World Universities Network (WUN).

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http://dx.doi.org/10.1016/j.anai.2017.04.011DOI Listing
June 2017

Hepatic deficiency of the pioneer transcription factor FoxA restricts hepatitis B virus biosynthesis by the developmental regulation of viral DNA methylation.

PLoS Pathog 2017 02 24;13(2):e1006239. Epub 2017 Feb 24.

Department of Microbiology and Immunology College of Medicine University of Illinois at Chicago 909 South Wolcott Avenue Chicago, IL, United States of America.

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http://dx.doi.org/10.1371/journal.ppat.1006239DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5342274PMC
February 2017

The Potential Role of Gut-Derived Inflammation in Multiple System Atrophy.

J Parkinsons Dis 2017 ;7(2):331-346

Department of Internal Medicine, Division of Gastroenterology, Rush University Medical Center, Chicago, IL, USA.

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http://dx.doi.org/10.3233/JPD-160991DOI Listing
January 2018

Change in Pattern of HER2 Fluorescent in Situ Hybridization (FISH) Results in Breast Cancers Submitted for FISH Testing: Experience of a Reference Laboratory Using US Food and Drug Administration Criteria and American Society of Clinical Oncology and College of American Pathologists Guidelines.

J Clin Oncol 2016 10;34(29):3502-3510

Mithun Vinod Shah, Anne E. Wiktor, Reid G. Meyer, Kathleen S. Tenner, Karla V. Ballman, Stefan J, Green, William R. Sukov, Rhett P. Ketterling, Robert B. Jenkins, Mayo Clinic, Rochester, MN; and Edith A. Perez, Mayo Clinic, Jacksonville, FL.

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http://dx.doi.org/10.1200/JCO.2015.61.8983DOI Listing
October 2016

Lateral Gene Transfer in a Heavy Metal-Contaminated-Groundwater Microbial Community.

mBio 2016 Apr 5;7(2):e02234-15. Epub 2016 Apr 5.

Institute for Environmental Genomics, Department of Microbiology and Plant Sciences, University of Oklahoma, Norman, Oklahoma, USA Earth Sciences Division, Lawrence Berkeley National Laboratory, Berkeley, California, USA State Key Joint Laboratory of Environment Simulation and Pollution Control, School of Environment, Tsinghua University, Beijing, China

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http://dx.doi.org/10.1128/mBio.02234-15DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4817265PMC
April 2016

The Circadian Clock Mutation Promotes Intestinal Dysbiosis.

Alcohol Clin Exp Res 2016 Feb;40(2):335-47

Department of Internal Medicine , Division of Gastroenterology, Rush University Medical Center, Chicago, Illinois.

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http://dx.doi.org/10.1111/acer.12943DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4977829PMC
February 2016

The Gastrointestinal Microbiome: Alcohol Effects on the Composition of Intestinal Microbiota.

Alcohol Res 2015 ;37(2):223-36

Utrecht Institute for Pharmaceutical Sciences, Utrecht University, Utrecht, the Netherlands.

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http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4590619PMC
April 2016

Draft Genome Sequence of the Pathogenic Bacterium Vibrio vulnificus V252 Biotype 1, Isolated in Israel.

Genome Announc 2015 Oct 15;3(5). Epub 2015 Oct 15.

Faculty of Biotechnology and Food Engineering, Technion-Israel Institute of Technology, Haifa, Israel

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http://dx.doi.org/10.1128/genomeA.01182-15DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4611685PMC
October 2015

Genomic Epidemiology of USA300 Methicillin-Resistant Staphylococcus aureus in an Urban Community.

Clin Infect Dis 2016 Jan 7;62(1):37-44. Epub 2015 Sep 7.

Rush University Medical Center/Stroger Hospital of Cook County, Chicago, Illinois.

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http://dx.doi.org/10.1093/cid/civ794DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4678108PMC
January 2016

Significant differences in fecal microbiota are associated with various stages of glucose tolerance in African American male veterans.

Transl Res 2015 Nov 8;166(5):401-11. Epub 2015 Jul 8.

Department of Medicine, University of Illinois Medical Center, Chicago, Ill; Department of Medicine, Jesse Brown VA Medical Center, Chicago, Ill. Electronic address:

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http://dx.doi.org/10.1016/j.trsl.2015.06.015DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4916963PMC
November 2015

Colonic bacterial composition in Parkinson's disease.

Mov Disord 2015 Sep 16;30(10):1351-60. Epub 2015 Jul 16.

Department of Neurology, Rush University Medical Center, Chicago, Illinois, USA.

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http://dx.doi.org/10.1002/mds.26307DOI Listing
September 2015

Burn Injury Alters the Intestinal Microbiome and Increases Gut Permeability and Bacterial Translocation.

PLoS One 2015 8;10(7):e0129996. Epub 2015 Jul 8.

Burn & Shock Trauma Research Institute, Loyola University Chicago Health Sciences Division, Maywood, IL, 60153, United States of America; Integrative Cell Biology Program, Loyola University Chicago Health Sciences Division, Maywood, IL, 60153, United States of America; Departments of Surgery, Loyola University Chicago Health Sciences Division, Maywood, IL, 60153, United States of America; Departments of Microbiology and Immunology, Loyola University Chicago Health Sciences Division, Maywood, IL, 60153, United States of America.

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http://journals.plos.org/plosone/article?id=10.1371/journal.pone.0129996PLOS
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4496078PMC
April 2016

Deconstructing the polymerase chain reaction: understanding and correcting bias associated with primer degeneracies and primer-template mismatches.

PLoS One 2015 21;10(5):e0128122. Epub 2015 May 21.

DNA Services Facility, Research Resources Center, University of Illinois at Chicago, Chicago, Illinois, United States of America; Dept. of Bioengineering, University of Illinois at Chicago, Chicago, Illinois, United States of America.

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http://journals.plos.org/plosone/article?id=10.1371/journal.pone.0128122PLOS
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4440812PMC
April 2016

Metagenomic evaluation of bacterial and archaeal diversity in the geothermal hot springs of manikaran, India.

Genome Announc 2015 Feb 19;3(1). Epub 2015 Feb 19.

School of the Environment, Florida A&M University, Tallahassee, Florida, USA.

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http://dx.doi.org/10.1128/genomeA.01544-14DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4335328PMC
February 2015

Metagenomics Reveals Planktonic Bacterial Community Shifts across a Natural CO2 Gradient in the Mediterranean Sea.

Genome Announc 2015 Feb 12;3(1). Epub 2015 Feb 12.

Marine Biology and Ecology Research Centre, Plymouth University, Plymouth, United Kingdom.

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http://dx.doi.org/10.1128/genomeA.01543-14DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4333660PMC
February 2015

Niche and host-associated functional signatures of the root surface microbiome.

Nat Commun 2014 Sep 18;5:4950. Epub 2014 Sep 18.

Department of Soil, Water and Environmental Sciences, Agricultural Research Organization of Israel, Bet Dagan 50250, Israel.

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http://dx.doi.org/10.1038/ncomms5950DOI Listing
September 2014

Circadian disorganization alters intestinal microbiota.

PLoS One 2014 21;9(5):e97500. Epub 2014 May 21.

Department of Internal Medicine, Division of Gastroenterology, Rush University Medical Center, Chicago, Illinois, United States of America; Department of Pharmacology, Rush University Medical Center, Chicago, Illinois, United States of America; Department of Physiology, Rush University Medical Center, Chicago, Illinois, United States of America; Division of Pharmacology, Utrecht Institute for Pharmaceutical Sciences, Utrecht University, Utrecht, The Netherlands.

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http://journals.plos.org/plosone/article?id=10.1371/journal.pone.0097500PLOS
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4029760PMC
June 2015

A survey of deepwater horizon (DWH) oil-degrading bacteria from the Eastern oyster biome and its surrounding environment.

Front Microbiol 2014 9;5:149. Epub 2014 Apr 9.

Environmental Biotechnology Laboratory, School of the Environment, Florida Agricultural and Mechanical University Tallahassee, FL, USA ; NOAA Environmental Cooperative Science Center, School of the Environment, Florida Agricultural and Mechanical University Tallahassee, FL, USA.

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http://dx.doi.org/10.3389/fmicb.2014.00149DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3988384PMC
April 2014

Draft Genome Sequence of Alicyclobacillus acidoterrestris Strain ATCC 49025.

Genome Announc 2013 Sep 5;1(5). Epub 2013 Sep 5.

Department of Food Quality and Safety, Agricultural Research Organization The Volcani Center, Bet-Dagan, Israel.

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http://dx.doi.org/10.1128/genomeA.00638-13DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3764408PMC
September 2013

Restriction site-associated DNA sequencing generates high-quality single nucleotide polymorphisms for assessing hybridization between bighead and silver carp in the United States and China.

Mol Ecol Resour 2014 Jan 20;14(1):79-86. Epub 2013 Aug 20.

Department of Biological Sciences, Western Illinois University, 1 University Circle, Macomb, IL, 61455, USA; Illinois Natural History Survey, 1816 S. Oak Street, Champaign, IL, 61820, USA.

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http://dx.doi.org/10.1111/1755-0998.12152DOI Listing
January 2014

Isolation and physiological characterization of psychrophilic denitrifying bacteria from permanently cold Arctic fjord sediments (Svalbard, Norway).

Environ Microbiol 2013 May 26;15(5):1606-18. Epub 2013 Mar 26.

Earth Ocean and Atmospheric Science Department, Florida State University, Tallahassee, FL, USA.

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http://dx.doi.org/10.1111/1462-2920.12110DOI Listing
May 2013

Draft Genome Sequence of Rhodococcus opacus Strain M213 Shows a Diverse Catabolic Potential.

Genome Announc 2013 Jan 14;1(1). Epub 2013 Feb 14.

School of the Environment, Florida A&M University, Tallahassee, Florida, USA.

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http://dx.doi.org/10.1128/genomeA.00144-12DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3569331PMC
January 2013