Publications by authors named "Stanley J F Laulederkind"

31Publications

Rat Genome Databases, Repositories, and Tools.

Methods Mol Biol 2019 ;2018:71-96

Department of Biomedical Engineering, Rat Genome Database, Medical College of Wisconsin, Milwaukee, WI, USA.

View Article

Download full-text PDF

Source
http://dx.doi.org/10.1007/978-1-4939-9581-3_3DOI Listing
November 2019

Expansion of the Human Phenotype Ontology (HPO) knowledge base and resources.

Nucleic Acids Res 2019 01;47(D1):D1018-D1027

Monarch Initiative, monarchinitiative.org.

View Article

Download full-text PDF

Source
https://academic.oup.com/nar/advance-article/doi/10.1093/nar
Publisher Site
http://dx.doi.org/10.1093/nar/gky1105DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6324074PMC
January 2019

A Primer for the Rat Genome Database (RGD).

Methods Mol Biol 2018 ;1757:163-209

Department of Biomedical Engineering, Medical College of Wisconsin and Marquette University, Milwaukee, WI, USA.

View Article

Download full-text PDF

Source
http://dx.doi.org/10.1007/978-1-4939-7737-6_8DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6487669PMC
January 2019

Disease Ontology: improving and unifying disease annotations across species.

Dis Model Mech 2018 03 12;11(3). Epub 2018 Mar 12.

Department of Epidemiology and Public Health, Institute for Genome Sciences, University of Maryland School of Medicine, Baltimore, MD, USA.

View Article

Download full-text PDF

Source
http://dmm.biologists.org/lookup/doi/10.1242/dmm.032839
Publisher Site
http://dx.doi.org/10.1242/dmm.032839DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5897730PMC
March 2018

Improving Interpretation of Cardiac Phenotypes and Enhancing Discovery With Expanded Knowledge in the Gene Ontology.

Circ Genom Precis Med 2018 02;11(2):e001813

From the Institute of Cardiovascular Science (R.C.L., V.K.K., R.E.F., N.H.C., R.P.H., P.J.T., P.D.L., P.M.E., L.C.) and Metabolism and Experimental Therapeutics, Division of Medicine (R.B.), University College London, United Kingdom; European Bioinformatics Institute (EMBL-EBI), European Molecular Biology Laboratory, Hinxton, United Kingdom (P.R., D.O.-S.); Gene Ontology Consortium (P.R., T.Z.B., D.O.-S., J.A.B., D.P.H.); The Zebrafish Model Organism Database, University of Oregon, Eugene (D.G.H.); Rat Genome Database, Human Molecular Genetics Center, Medical College of Wisconsin, Milwaukee (S.J.F.L.); Arabidopsis Information Resource, Phoenix Bioinformatics, Fremont, CA (T.Z.B.); FlyBase, University of Cambridge, United Kingdom (S.T.); Mouse Genome Informatics, The Jackson Laboratory, Bar Harbor, ME (J.A.B., D.P.H.); Oxbridge BHF Centre of Regenerative Medicine, Department of Physiology, Anatomy and Genetics, University of Oxford, United Kingdom (P.R.R.); and William Harvey Heart Centre, Barts and The London School of Medicine and Dentistry, Queen Mary University of London, United Kingdom (A.T.).

View Article

Download full-text PDF

Source
http://dx.doi.org/10.1161/CIRCGEN.117.001813DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5821137PMC
February 2018

The Disease Portals, disease-gene annotation and the RGD disease ontology at the Rat Genome Database.

Database (Oxford) 2016 23;2016. Epub 2016 Mar 23.

Medical College of Wisconsin, Human and Molecular Genetics Center Department of Surgery, Medical College of Wisconsin, Milwaukee, WI, USA.

View Article

Download full-text PDF

Source
http://dx.doi.org/10.1093/database/baw034DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4805243PMC
October 2016

PhenoMiner: a quantitative phenotype database for the laboratory rat, Rattus norvegicus. Application in hypertension and renal disease.

Database (Oxford) 2015 28;2015. Epub 2015 Jan 28.

Human and Molecular Genetics Center, Medical College of Wisconsin, Department of Physiology, Medical College of Wisconsin and Department of Surgery, Medical College of Wisconsin, 8701 Watertown Plank Road, Milwaukee, WI53226, USA Human and Molecular Genetics Center, Medical College of Wisconsin, Department of Physiology, Medical College of Wisconsin and Department of Surgery, Medical College of Wisconsin, 8701 Watertown Plank Road, Milwaukee, WI53226, USA.

View Article

Download full-text PDF

Source
http://dx.doi.org/10.1093/database/bau128DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4309021PMC
September 2015

OntoMate: a text-mining tool aiding curation at the Rat Genome Database.

Database (Oxford) 2015 25;2015. Epub 2015 Jan 25.

Human and Molecular Genetics Center, Medical College of Wisconsin, Department of Quantitative Health Sciences, University of Massachusetts Medical School, Department of Physiology, Medical College of Wisconsin and Department of Surgery, Medical College of Wisconsin, 8701 Watertown Plank Rd, Milwaukee, WI 53226-3548, USA Human and Molecular Genetics Center, Medical College of Wisconsin, Department of Quantitative Health Sciences, University of Massachusetts Medical School, Department of Physiology, Medical College of Wisconsin and Department of Surgery, Medical College of Wisconsin, 8701 Watertown Plank Rd, Milwaukee, WI 53226-3548, USA.

View Article

Download full-text PDF

Source
http://dx.doi.org/10.1093/database/bau129DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4305386PMC
September 2015

The Rat Genome Database 2015: genomic, phenotypic and environmental variations and disease.

Nucleic Acids Res 2015 Jan 29;43(Database issue):D743-50. Epub 2014 Oct 29.

Human and Molecular Genetics Center, Medical College of Wisconsin, Milwaukee, WI 53226, USA Department of Physiology, Medical College of Wisconsin, Milwaukee, WI 53226, USA.

View Article

Download full-text PDF

Source
http://dx.doi.org/10.1093/nar/gku1026DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4383884PMC
January 2015

Overview of the gene ontology task at BioCreative IV.

Database (Oxford) 2014 25;2014. Epub 2014 Aug 25.

National Center for Biotechnology Information (NCBI), National Library of Medicine, 8600 Rockville Pike, Bethesda, MD 20817, USA WormBase, Division of Biology, California Institute of Technology, 1200 E. California Boulevard, Pasadena, CA 91125, USA, TAIR, Department of Plant Biology, The Arabidopsis Information Resource, Carnegie Institution for Science, Stanford, CA 94305, USA, Center for Bioinformatics and Computational Biology, University of Delaware, 15 Innovation Way, Newark, DE 19711, USA, FlyBase, Department of Genetics, University of Cambridge, Downing Street, Cambridge CB2 3EH, UK, Rat Genome Database, Human and Molecular Genetics Center, Medical College of Wisconsin, 8701 Watertown Plank Road, Milwaukee, WI 53226, USA, USDA-ARS Plant Genetics Research Unit and Division of Plant Sciences, Department of Agronomy, University of Missouri, Columbia, MO 65211, USA, HES-SO, HEG, Library and Information Sciences, 7 route de Drize, CH-1227 Carouge, Switzerland, SIBtex, Swiss Institute of Bioinformatics, Rue Michel Servet 1, 1211 Geneva 4, Switzerland, School of Computer Engineering, Nanyang Technological University, Block N4, #02a-32, Nanyang Avenue, Singapore 639798, Department of Computer Science and Information Engineering, National Cheng-Kung University, No. 1, University Rd., Tainan 701, Taiwan, Republic of China, Department of Radiology, Mackay Memorial Hospital, Taitung Branch, Lane 303 Chang Sha St. Taitung, Taiwan, Republic of China, Department of Health Sciences Research, Mayo Clinic, 200 First Street SW, Rochester, MN 55905, USA, Department of Computer Science, University of Delaware, 101 Smith Hall, Newark, DE 19716, USA, Department of Quantitative Health Sciences, University of Massachusetts Medical School, 55 Lake Avenue North (AC7-059), Worcester, MA 01655 USA, Department of Biomedical Informatics, Arizona State University, 13212 East Shea Boulevard Scottsdale, AZ 85259 USA, Institute of Information Science, Academia Sinica, 128 Academia Road, Secti

View Article

Download full-text PDF

Source
http://dx.doi.org/10.1093/database/bau086DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4142793PMC
February 2015

BC4GO: a full-text corpus for the BioCreative IV GO task.

Database (Oxford) 2014 28;2014. Epub 2014 Jul 28.

WormBase, Division of Biology, California Institute of Technology, 1200 E. California Blvd., Pasadena, CA 91125, USA, USDA-ARS Plant Genetics Research Unit and Division of Plant Sciences, Department of Agronomy, University of Missouri, Columbia, MO 65211, USA, FlyBase, Department of Genetics, University of Cambridge, Downing Street, Cambridge CB2 3EH, UK, Rat Genome Database, Human and Molecular Genetics Center, Medical College of Wisconsin, 8701 Watertown Plank Road, Milwaukee, WI 53226, USA, TAIR, Department of Plant Biology, Carnegie Institution for Science, 260 Panama Street, Stanford, CA 94305, USA, Center for Bioinformatics and Computational Biology, University of Delaware, 15 Innovation Way, Newark, DE 19711, USA, Howard Hughes Medical Institute, California Institute of Technology, 1200 E. California Blvd., Pasadena, CA 91125, USA, National Center for Biotechnology Information (NCBI), 8600 Rockville Pike, Bethesda, MD 20894, USA

View Article

Download full-text PDF

Source
http://dx.doi.org/10.1093/database/bau074DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4112614PMC
February 2015

Analysis of disease-associated objects at the Rat Genome Database.

Database (Oxford) 2013 21;2013:bat046. Epub 2013 Jun 21.

Rat Genome Database, Human and Molecular Genetics Center, Medical College of Wisconsin, 8701 Watertown Plank Road, Milwaukee, WI 53226, USA.

View Article

Download full-text PDF

Source
https://academic.oup.com/database/article/doi/10.1093/databa
Publisher Site
http://dx.doi.org/10.1093/database/bat046DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3689439PMC
October 2013

PhenoMiner: quantitative phenotype curation at the rat genome database.

Database (Oxford) 2013 19;2013:bat015. Epub 2013 Apr 19.

Human and Molecular Genetics Center, Medical College of Wisconsin, Human and Molecular Genetics Center, 8701 Watertown Plank Rd, Milwaukee, WI 53226-3548, USA.

View Article

Download full-text PDF

Source
http://dx.doi.org/10.1093/database/bat015DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3630803PMC
October 2013

The Rat Genome Database 2013--data, tools and users.

Brief Bioinform 2013 Jul 22;14(4):520-6. Epub 2013 Feb 22.

Human and Molecular Genetics Center, Medical College of Wisconsin, 8701 Watertown Plank Rd, Milwaukee, WI 53226-3548, USA.

View Article

Download full-text PDF

Source
http://dx.doi.org/10.1093/bib/bbt007DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3713714PMC
July 2013

Exploring genetic, genomic, and phenotypic data at the rat genome database.

Curr Protoc Bioinformatics 2012 Dec;Chapter 1:Unit1.14

Human and Molecular Genetics Center, Medical College of Wisconsin, Milwaukee, Wisconsin, USA.

View Article

Download full-text PDF

Source
http://dx.doi.org/10.1002/0471250953.bi0114s40DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3555435PMC
December 2012

Ontology searching and browsing at the Rat Genome Database.

Database (Oxford) 2012 20;2012:bas016. Epub 2012 Mar 20.

Human and Molecular Genetics Center, Medical College of Wisconsin, Milwaukee, WI 53226-3548, USA.

View Article

Download full-text PDF

Source
http://dx.doi.org/10.1093/database/bas016DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3308169PMC
June 2012

The rat genome database curators: who, what, where, why.

PLoS Comput Biol 2009 Nov 26;5(11):e1000582. Epub 2009 Nov 26.

Rat Genome Database, Human and Molecular Genetics Center, Medical College of Wisconsin, Milwaukee, Wisconsin, USA.

View Article

Download full-text PDF

Source
http://dx.doi.org/10.1371/journal.pcbi.1000582DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2775909PMC
November 2009

Renal pathology resulting from PGHS-2 gene ablation in DBA/B6 mice.

Prostaglandins Other Lipid Mediat 2002 Sep;70(1-2):161-8

Department of Veterans Affairs Medical Center, The University of Tennessee, Memphis 38104, USA.

View Article

Download full-text PDF

Source
http://dx.doi.org/10.1016/s0090-6980(02)00063-1DOI Listing
September 2002

Both constitutive and inducible prostaglandin H synthase affect dermal wound healing in mice.

Lab Invest 2002 Jul;82(7):919-27

Department of Veterans Affairs Medical Center and Department of Pharmacology, University of Memphis Health Sciences Center, Tennessee 38104, USA.

View Article

Download full-text PDF

Source
http://dx.doi.org/10.1097/01.lab.0000020407.98665.98DOI Listing
July 2002