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Publications Authored by Stacy J Caillier | PubFacts
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Next-generation sequencing reveals new information about HLA allele and haplotype diversity in a large European American population.

Hum Immunol 2019 Oct 22;80(10):807-822. Epub 2019 Jul 22.

Department of Pathology, Stanford University School of Medicine, Palo Alto, CA, USA; Histocompatibility, Immunogenetics and Disease Profiling Laboratory, Stanford Blood Center, Palo Alto, CA, USA.

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http://dx.doi.org/10.1016/j.humimm.2019.07.275DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6778037PMC
October 2019

Association of HLA Genetic Risk Burden With Disease Phenotypes in Multiple Sclerosis.

JAMA Neurol 2016 07;73(7):795-802

Department of Neurology, School of Medicine, University of California, San Francisco5Bioengineering Graduate Group, University of California, San Francisco and Berkeley6Department of Radiology and Biomedical Imaging, University of California, San Francisc.

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http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5081075PMC
http://dx.doi.org/10.1001/jamaneurol.2016.0980DOI Listing
July 2016

Mitochondrial DNA sequence variation in multiple sclerosis.

Neurology 2015 Jul 1;85(4):325-30. Epub 2015 Jul 1.

From the California Pacific Medical Center Research Institute (G.J.T.), San Francisco, CA; Department of Neurology (A.S., S.J.C., S.L.H., J.R.O.), University of California, San Francisco; Department of Health Sciences (S.D.), UPO and Interdisciplinary Research Center of Autoimmune Diseases (IRCAD), University of Eastern Piedmont, Avogadro, Novara, Italy; and Department of Neuro-rehabilitation and INSPE (Institute of Experimental Neurology) (F.M.B.), Scientific Institute San Raffaele, Milan, Italy.

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http://dx.doi.org/10.1212/WNL.0000000000001744DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4520811PMC
July 2015

SNP imputation bias reduces effect size determination.

Front Genet 2015 9;6:30. Epub 2015 Feb 9.

Department of Neurology, University of California San Francisco San Francisco, CA, USA.

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http://dx.doi.org/10.3389/fgene.2015.00030DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4321633PMC
February 2015

Analysis of immune-related loci identifies 48 new susceptibility variants for multiple sclerosis.

Authors:
Ashley H Beecham Nikolaos A Patsopoulos Dionysia K Xifara Mary F Davis Anu Kemppinen Chris Cotsapas Tejas S Shah Chris Spencer David Booth An Goris Annette Oturai Janna Saarela Bertrand Fontaine Bernhard Hemmer Claes Martin Frauke Zipp Sandra D'Alfonso Filippo Martinelli-Boneschi Bruce Taylor Hanne F Harbo Ingrid Kockum Jan Hillert Tomas Olsson Maria Ban Jorge R Oksenberg Rogier Hintzen Lisa F Barcellos Cristina Agliardi Lars Alfredsson Mehdi Alizadeh Carl Anderson Robert Andrews Helle Bach Søndergaard Amie Baker Gavin Band Sergio E Baranzini Nadia Barizzone Jeffrey Barrett Céline Bellenguez Laura Bergamaschi Luisa Bernardinelli Achim Berthele Viola Biberacher Thomas M C Binder Hannah Blackburn Izaura L Bomfim Paola Brambilla Simon Broadley Bruno Brochet Lou Brundin Dorothea Buck Helmut Butzkueven Stacy J Caillier William Camu Wassila Carpentier Paola Cavalla Elisabeth G Celius Irène Coman Giancarlo Comi Lucia Corrado Leentje Cosemans Isabelle Cournu-Rebeix Bruce A C Cree Daniele Cusi Vincent Damotte Gilles Defer Silvia R Delgado Panos Deloukas Alessia di Sapio Alexander T Dilthey Peter Donnelly Bénédicte Dubois Martin Duddy Sarah Edkins Irina Elovaara Federica Esposito Nikos Evangelou Barnaby Fiddes Judith Field Andre Franke Colin Freeman Irene Y Frohlich Daniela Galimberti Christian Gieger Pierre-Antoine Gourraud Christiane Graetz Andrew Graham Verena Grummel Clara Guaschino Athena Hadjixenofontos Hakon Hakonarson Christopher Halfpenny Gillian Hall Per Hall Anders Hamsten James Harley Timothy Harrower Clive Hawkins Garrett Hellenthal Charles Hillier Jeremy Hobart Muni Hoshi Sarah E Hunt Maja Jagodic Ilijas Jelčić Angela Jochim Brian Kendall Allan Kermode Trevor Kilpatrick Keijo Koivisto Ioanna Konidari Thomas Korn Helena Kronsbein Cordelia Langford Malin Larsson Mark Lathrop Christine Lebrun-Frenay Jeannette Lechner-Scott Michelle H Lee Maurizio A Leone Virpi Leppä Giuseppe Liberatore Benedicte A Lie Christina M Lill Magdalena Lindén Jenny Link Felix Luessi Jan Lycke Fabio Macciardi Satu Männistö Clara P Manrique Roland Martin Vittorio Martinelli Deborah Mason Gordon Mazibrada Cristin McCabe Inger-Lise Mero Julia Mescheriakova Loukas Moutsianas Kjell-Morten Myhr Guy Nagels Richard Nicholas Petra Nilsson Fredrik Piehl Matti Pirinen Siân E Price Hong Quach Mauri Reunanen Wim Robberecht Neil P Robertson Mariaemma Rodegher David Rog Marco Salvetti Nathalie C Schnetz-Boutaud Finn Sellebjerg Rebecca C Selter Catherine Schaefer Sandip Shaunak Ling Shen Simon Shields Volker Siffrin Mark Slee Per Soelberg Sorensen Melissa Sorosina Mireia Sospedra Anne Spurkland Amy Strange Emilie Sundqvist Vincent Thijs John Thorpe Anna Ticca Pentti Tienari Cornelia van Duijn Elizabeth M Visser Steve Vucic Helga Westerlind James S Wiley Alastair Wilkins James F Wilson Juliane Winkelmann John Zajicek Eva Zindler Jonathan L Haines Margaret A Pericak-Vance Adrian J Ivinson Graeme Stewart David Hafler Stephen L Hauser Alastair Compston Gil McVean Philip De Jager Stephen J Sawcer Jacob L McCauley

Nat Genet 2013 Nov 29;45(11):1353-60. Epub 2013 Sep 29.

1] John P. Hussman Institute for Human Genomics, University of Miami, Miller School of Medicine, Miami, Florida, USA. [2].

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http://dx.doi.org/10.1038/ng.2770DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3832895PMC
November 2013

Aggregation of multiple sclerosis genetic risk variants in multiple and single case families.

Ann Neurol 2011 Jan;69(1):65-74

Department of Neurology, School of Medicine, University of California at San Francisco, San Francisco, CA, USA.

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http://dx.doi.org/10.1002/ana.22323DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3511846PMC
January 2011

Copy number variation in African Americans.

BMC Genet 2009 Mar 24;10:15. Epub 2009 Mar 24.

Department of Neurology, University of California, San Francisco, CA, USA.

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http://dx.doi.org/10.1186/1471-2156-10-15DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2674062PMC
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http://dx.doi.org/10.1001/archneurol.2008.47DOI Listing
March 2008

Quantitative longitudinal analysis of T cell receptor repertoire expression in HIV-infected patients on antiretroviral and interleukin-2 therapy.

AIDS Res Hum Retroviruses 2007 May;23(5):741-7

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http://dx.doi.org/10.1089/aid.2007.0209DOI Listing
May 2007

Synergy or independence? Deciphering the interaction of HLA Class I and NK cell KIR alleles in early HIV-1 disease progression.

PLoS Pathog 2007 Apr;3(4):e43

HIV/AIDS Division, Department of Medicine, San Francisco General Hospital, University of California San Francisco, San Francisco, California, United States of America.

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http://dx.doi.org/10.1371/journal.ppat.0030043DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC1853116PMC
April 2007

Complex gene-gene interactions in multiple sclerosis: a multifactorial approach reveals associations with inflammatory genes.

Neurogenetics 2007 Jan 22;8(1):11-20. Epub 2006 Sep 22.

Center for Human Genetics Research, Department of Molecular Physiology and Biophysics, 519 Light Hall, Vanderbilt University Medical School, Nashville, TN 37232-0700, USA.

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January 2007