Spyridon Bakas

Spyridon Bakas

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Spyridon Bakas

Spyridon Bakas

Publications by authors named "Spyridon Bakas"

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The Image Biomarker Standardization Initiative: Standardized Quantitative Radiomics for High-Throughput Image-based Phenotyping.

Radiology 2020 Mar 10:191145. Epub 2020 Mar 10.

From OncoRay-National Center for Radiation Research in Oncology, Faculty of Medicine and University Hospital Carl Gustav Carus, Technische Universität Dresden, Helmholtz-Zentrum Dresden-Rossendorf, Fetscherstr 74, PF 41, 01307 Dresden, Germany (A.Z., S. Leger, E.G.C.T., C.R., S. Löck); National Center for Tumor Diseases (NCT), Partner Site Dresden, Germany: German Cancer Research Center (DKFZ), Heidelberg, Germany (A.Z.); Faculty of Medicine and University Hospital Carl Gustav Carus, Technische Universität Dresden and Helmholtz Association/Helmholtz-Zentrum Dresden-Rossendorf (HZDR), Dresden, Germany (A.Z., S. Leger, E.G.C.T.); German Cancer Consortium (DKTK), Partner Site Dresden, and German Cancer Research Center (DKFZ), Heidelberg, Germany (A.Z., S. Leger, E.G.C.T., C.R., S. Löck); Medical Physics Unit, McGill University, Montréal, Canada (M.V., I.E.N.); Image Response Assessment Team Core Facility, Moffitt Cancer Center, Tampa, Fla (M.A.A.); Dana-Farber Cancer Institute, Brigham and Women's Hospital, and Harvard Medical School, Harvard University, Boston, Mass (H.J.W.L.A.); Institute of Information Systems, University of Applied Sciences Western Switzerland (HES-SO), Sierre, Switzerland (V.A., A.D., H.M.); Department of Medical Physics, Memorial Sloan Kettering Cancer Center, New York, NY (A.A.); Department of Electrical and Computer Engineering, Johns Hopkins University, Baltimore, Md (S.A.); Department of Radiology and Radiological Science, Johns Hopkins University, Baltimore, Md (S.A., A.R.); Center for Biomedical image Computing and Analytics (CBICA), University of Pennsylvania, Philadelphia, Pa (S.B., C.D., S.M.H., S.P.); Department of Radiology, Perelman School of Medicine, University of Pennsylvania, Philadelphia, Pa (S.B., C.D., S.M.H., S.P.); Department of Pathology and Laboratory Medicine, Perelman School of Medicine, University of Pennsylvania, Philadelphia, Pa (S.B.); Department of Nuclear Medicine and Molecular Imaging, University of Groningen, University Medical Center Groningen (UMCG), Groningen, the Netherlands (R.J.B., R.B., E.A.G.P.); Radiology and Nuclear Medicine, VU University Medical Centre (VUMC), Amsterdam, the Netherlands (R.B.); Department of Radiation Oncology, University Hospital Zurich, University of Zurich, Zurich, Switzerland (M.B., M.Guckenberger, S.T.L.); Fondazione Policlinico Universitario "A. Gemelli" IRCCS, Rome, Italy (L.B., N.D., R.G., J.L., V.V.); Laboratoire d'Imagerie Translationnelle en Oncologie, Université Paris Saclay, Inserm, Institut Curie, Orsay, France (I.B., C.N., F.O.); Cancer Imaging Dept, School of Biomedical Engineering and Imaging Sciences, King's College London, London, United Kingdom (G.J.R.C., V.G., M.M.S.); Department of Nuclear Medicine and Molecular Imaging, Lausanne University Hospital, Lausanne, Switzerland (A.D.); Laboratory of Medical Information Processing (LaTIM)-team ACTION (image-guided therapeutic action in oncology), INSERM, UMR 1101, IBSAM, UBO, UBL, Brest, France (M.C.D., M.H., T.U.); Department of Radiation Oncology, the Netherlands Cancer Institute (NKI), Amsterdam, the Netherlands (C.V.D.); Department of Radiology, Stanford University School of Medicine, Stanford, Calif (S.E., S.N.); Department of Radiation Oncology, Physics Division, University of Michigan, Ann Arbor, Mich (I.E.N., A.U.K.R.); Surgical Planning Laboratory, Brigham and Women's Hospital and Harvard Medical School, Harvard University, Boston, Mass (A.Y.F.); Department of Cancer Imaging and Metabolism, Moffitt Cancer Center, Tampa, Fla (R.J.G.); Department of Medical Image Computing, German Cancer Research Center (DKFZ), Heidelberg, Germany (M. Götz, F.I., K.H.M.H., J.S.); The D-Lab, Department of Precision Medicine, GROW-School for Oncology and Developmental Biology, Maastricht University Medical Centre+, Maastricht, the Netherlands (P.L., R.T.H.L.); Section for Biomedical Physics, Department of Radiation Oncology, University of Tübingen, Germany (F.L., J.S.F., D.T.); Department of Clinical Medicine, University of Bergen, Bergen, Norway (A.L.); Department of Radiation Oncology, University of California, San Francisco, Calif (O.M.); University of Geneva, Geneva, Switzerland (H.M.); Department of Electrical Engineering, Stanford University, Stanford, Calif (S.N.); Department of Medicine (Biomedical Informatics Research), Stanford University School of Medicine, Stanford, Calif (S.N.); Departments of Radiology and Physics, University of British Columbia, Vancouver, Canada (A.R.); Department of Computational Medicine and Bioinformatics, University of Michigan, Ann Arbor, Mich (A.U.K.R.); Department of Radiation Oncology, University of Groningen, University Medical Center Groningen (UMCG), Groningen, the Netherlands (N.M.S., R.J.H.M.S., L.V.v.D.); School of Engineering, Cardiff University, Cardiff, United Kingdom (E.S., P.W.); Department of Medical Physics, Velindre Cancer Centre, Cardiff, United Kingdom (E.S.); Department of Radiotherapy and Radiation Oncology, Faculty of Medicine and University Hospital Carl Gustav Carus, Technische Universität Dresden, Dresden, Germany (E.G.C.T., C.R., S. Löck), Helmholtz-Zentrum Dresden-Rossendorf, Institute of Radiooncology-OncoRay, Dresden, Germany (E.G.C.T., C.R.); Department of Nuclear Medicine, CHU Milétrie, Poitiers, France (T.U.); Department of Radiology, the Netherlands Cancer Institute (NKI), Amsterdam, the Netherlands (J.v.G.); GROW-School for Oncology and Developmental Biology, Maastricht University Medical Center, Maastricht, the Netherlands (J.v.G.); Department of Radiation Oncology, Dana-Farber Cancer Institute, Brigham and Women's Hospital, Harvard Medical School, Boston, Mass (J.v.G.); and Department of Radiology, Leiden University Medical Center (LUMC), Leiden, the Netherlands (F.H.P.v.V.).

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http://dx.doi.org/10.1148/radiol.2020191145DOI Listing
March 2020

Systematic Evaluation of Image Tiling Adverse Effects on Deep Learning Semantic Segmentation.

Front Neurosci 2020 7;14:65. Epub 2020 Feb 7.

Center for Biomedical Image Computing and Analytics, University of Pennsylvania, Philadelphia, PA, United States.

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http://dx.doi.org/10.3389/fnins.2020.00065DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC7020775PMC
February 2020

Precision diagnostics based on machine learning-derived imaging signatures.

Magn Reson Imaging 2019 12 6;64:49-61. Epub 2019 May 6.

Center for Biomedical Image Computing and Analytics, University of Pennsylvania, United States of America.

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http://dx.doi.org/10.1016/j.mri.2019.04.012DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6832825PMC
December 2019

Multivariate Analysis of Preoperative Magnetic Resonance Imaging Reveals Transcriptomic Classification of Glioblastoma Patients.

Front Comput Neurosci 2019 12;13:81. Epub 2019 Dec 12.

Center for Biomedical Image Computing and Analytics, Perelman School of Medicine, University of Pennsylvania, Philadelphia, PA, United States.

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http://dx.doi.org/10.3389/fncom.2019.00081DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6923885PMC
December 2019

Multi-Disease Segmentation of Gliomas and White Matter Hyperintensities in the BraTS Data Using a 3D Convolutional Neural Network.

Front Comput Neurosci 2019 20;13:84. Epub 2019 Dec 20.

Department of Radiology & Biomedical Imaging, University of California, San Francisco, San Francisco, CA, United States.

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http://dx.doi.org/10.3389/fncom.2019.00084DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6933520PMC
December 2019

Imaging signatures of glioblastoma molecular characteristics: A radiogenomics review.

J Magn Reson Imaging 2019 Aug 27. Epub 2019 Aug 27.

Center for Biomedical Image Computing and Analytics (CBICA), University of Pennsylvania, Philadelphia, Pennsylvania, USA.

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http://dx.doi.org/10.1002/jmri.26907DOI Listing
August 2019

Evaluation of Indirect Methods for Motion Compensation in 2-D Focal Liver Lesion Contrast-Enhanced Ultrasound (CEUS) Imaging.

Ultrasound Med Biol 2019 06 2;45(6):1380-1396. Epub 2019 Apr 2.

Radiology & Imaging Research Centre, Evgenidion Hospital, National and Kapodistrian University, Ilisia, Athens, Greece.

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http://dx.doi.org/10.1016/j.ultrasmedbio.2019.01.023DOI Listing
June 2019

Computational staining of unlabelled tissue.

Nat Biomed Eng 2019 06;3(6):425-426

Center for Biomedical Image Computing and Analytics, Richards Medical Research Laboratories, University of Pennsylvania, Philadelphia, PA, USA.

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http://dx.doi.org/10.1038/s41551-019-0414-3DOI Listing
June 2019

Multi-Institutional Deep Learning Modeling Without Sharing Patient Data: A Feasibility Study on Brain Tumor Segmentation.

Brainlesion 2019 26;11383:92-104. Epub 2019 Jan 26.

Center for Biomedical Image Computing and Analytics (CBICA), University of Pennsylvania, Philadelphia, PA 19104, USA.

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http://dx.doi.org/10.1007/978-3-030-11723-8_9DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6589345PMC
January 2019

Epidermal Growth Factor Receptor Extracellular Domain Mutations in Glioblastoma Present Opportunities for Clinical Imaging and Therapeutic Development.

Cancer Cell 2018 07;34(1):163-177.e7

Department of Neurosurgery, Perelman School of Medicine, University of Pennsylvania, Philadelphia, PA 19104, USA; Center for Biomedical Image Computing and Analytics, Perelman School of Medicine, University of Pennsylvania, Philadelphia, PA 19104, USA; Abramson Cancer Center, University of Pennsylvania, Philadelphia, PA 19104, USA. Electronic address:

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http://dx.doi.org/10.1016/j.ccell.2018.06.006DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6424337PMC
July 2018

Brain Cancer Imaging Phenomics Toolkit (brain-CaPTk): An Interactive Platform for Quantitative Analysis of Glioblastoma.

Brainlesion 2018 17;10670:133-145. Epub 2018 Feb 17.

Department of Radiology, Perelman School of Medicine, Center for Biomedical Image Computing and Analytics (CBICA), University of Pennsylvania, Philadelphia, PA, USA.

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http://dx.doi.org/10.1007/978-3-319-75238-9_12DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5934754PMC
February 2018

Automatic Identification of the Optimal Reference Frame for Segmentation and Quantification of Focal Liver Lesions in Contrast-Enhanced Ultrasound.

Ultrasound Med Biol 2017 10 10;43(10):2438-2451. Epub 2017 Jul 10.

Radiology & Imaging Research Centre, Evgenidion Hospital, National and Kapodistrian University, Athens, Greece.

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http://dx.doi.org/10.1016/j.ultrasmedbio.2017.06.005DOI Listing
October 2017

Advancing The Cancer Genome Atlas glioma MRI collections with expert segmentation labels and radiomic features.

Sci Data 2017 09 5;4:170117. Epub 2017 Sep 5.

Center for Biomedical Image Computing and Analytics (CBICA), Perelman School of Medicine, University of Pennsylvania, Richards Medical Research Laboratories, Floor 7, 3700 Hamilton Walk, Philadelphia, Pennsylvania 19104, USA.

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http://dx.doi.org/10.1038/sdata.2017.117DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5685212PMC
September 2017

Detection of EGFRvIII in Glioblastoma via Perfusion Magnetic Resonance Imaging Signature Consistent with Deep Peritumoral Infiltration: The -Index.

Clin Cancer Res 2017 Aug 20;23(16):4724-4734. Epub 2017 Apr 20.

Center for Biomedical Image Computing and Analytics, Perelman School of Medicine, University of Pennsylvania, Philadelphia, Pennsylvania.

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http://dx.doi.org/10.1158/1078-0432.CCR-16-1871DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5559313PMC
August 2017

Advanced magnetic resonance imaging in glioblastoma: a review.

Chin Clin Oncol 2017 Aug;6(4):40

Department of Radiation Oncology, Sidney Kimmel Cancer Center, Thomas Jefferson University, Philadelphia, PA, USA.

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http://dx.doi.org/10.21037/cco.2017.06.28DOI Listing
August 2017

Segmentation of Gliomas in Pre-operative and Post-operative Multimodal Magnetic Resonance Imaging Volumes Based on a Hybrid Generative-Discriminative Framework.

Brainlesion 2016 10 12;10154:184-194. Epub 2017 Apr 12.

Section of Biomedical Image Analysis, Perelman School of Medicine, Center for Biomedical Image Computing and Analytics, University of Pennsylvania, Philadelphia, USA.

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http://dx.doi.org/10.1007/978-3-319-55524-9_18DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5512606PMC
October 2016