Soren Besenbacher

Soren Besenbacher

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Soren Besenbacher

Soren Besenbacher

Publications by authors named "Soren Besenbacher"

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38Publications

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Association Mapping and Disease: Evolutionary Perspectives.

Methods Mol Biol 2019 ;1910:533-553

Bioinformatics Research Centre, Aarhus University, Aarhus, Denmark.

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http://link.springer.com/10.1007/978-1-4939-9074-0_17
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http://dx.doi.org/10.1007/978-1-4939-9074-0_17DOI Listing
January 2020

Hierarchical Classification of Cancers of Unknown Primary Using Multi-Omics Data.

Cancer Inform 2019 30;18:1176935119872163. Epub 2019 Aug 30.

Department of Molecular Medicine (MOMA), Aarhus University Hospital, Aarhus, Denmark.

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http://dx.doi.org/10.1177/1176935119872163DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6719477PMC
August 2019

Direct estimation of mutations in great apes reconciles phylogenetic dating.

Nat Ecol Evol 2019 02 21;3(2):286-292. Epub 2019 Jan 21.

Bioinformatics Research Centre, Aarhus University, Aarhus, Denmark.

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http://dx.doi.org/10.1038/s41559-018-0778-xDOI Listing
February 2019

A site specific model and analysis of the neutral somatic mutation rate in whole-genome cancer data.

BMC Bioinformatics 2018 04 19;19(1):147. Epub 2018 Apr 19.

Department of Molecular Medicine, Aarhus University, Palle Juul-Jensens Boulevard 99, Aarhus N, DK-8200, Denmark.

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http://dx.doi.org/10.1186/s12859-018-2141-2DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5909259PMC
April 2018

Assembly and analysis of 100 full MHC haplotypes from the Danish population.

Genome Res 2017 09 3;27(9):1597-1607. Epub 2017 Aug 3.

Bioinformatics Research Centre, Aarhus University, 8000 Aarhus C., Denmark.

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http://dx.doi.org/10.1101/gr.218891.116DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5580718PMC
September 2017

Corrigendum: Common variants at 19p13 are associated with susceptibility to ovarian cancer.

Authors:
Kelly L Bolton Jonathan Tyrer Honglin Song Susan J Ramus Maria Notaridou Chris Jones Tanya Sher Aleksandra Gentry-Maharaj Eva Wozniak Ya-Yu Tsai Joanne Weidhaas Daniel Paik David J Van Den Berg Daniel O Stram Celeste Leigh Pearce Anna H Wu Wendy Brewster Hoda Anton-Culver Argyrios Ziogas Steven A Narod Douglas A Levine Stanley B Kaye Robert Brown Jim Paul James Flanagan Weiva Sieh Valerie McGuire Alice S Whittemore Ian Campbell Martin E Gore Jolanta Lissowska Hanna P Yang Krzysztof Medrek Jacek Gronwald Jan Lubinski Anna Jakubowska Nhu D Le Linda S Cook Linda E Kelemen Angela Brooks-Wilson Leon F A G Massuger Lambertus A Kiemeney Katja K H Aben Anne M van Altena Richard Houlston Ian Tomlinson Rachel T Palmieri Patricia G Moorman Joellen Schildkraut Edwin S Iversen Catherine Phelan Robert A Vierkant Julie M Cunningham Ellen L Goode Brooke L Fridley Susan Kruger-Kjaer Jan Blaeker Estrid Hogdall Claus Hogdall Jenny Gross Beth Y Karlan Roberta B Ness Robert P Edwards Kunle Odunsi Kirsten B Moyisch Julie A Baker Francesmary Modugno Tuomas Heikkinenen Ralf Butzow Heli Nevanlinna Arto Leminen Natalia Bogdanova Natalia Antonenkova Thilo Doerk Peter Hillemanns Matthias Dürst Ingo Runnebaum Pamela J Thompson Michael E Carney Marc T Goodman Galina Lurie Shan Wang-Gohrke Rebecca Hein Jenny Chang-Claude Mary Anne Rossing Kara L Cushing-Haugen Jennifer Doherty Chu Chen Thorunn Rafnar Soren Besenbacher Patrick Sulem Kari Stefansson Michael J Birrer Kathryn L Terry Dena Hernandez Daniel W Cramer Ignace Vergote Frederic Amant Diether Lambrechts Evelyn Despierre Peter A Fasching Matthias W Beckmann Falk C Thiel Arif B Ekici Xiaoqing Chen Sharon E Johnatty Penelope M Webb Jonathan Beesley Stephen Chanock Montserrat Garcia-Closas Tom Sellers Douglas F Easton Andrew Berchuck Georgia Chenevix-Trench Paul D P Pharoah Simon A Gayther

Nat Genet 2016 Jan;48(1):101

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http://dx.doi.org/10.1038/ng0116-101bDOI Listing
January 2016

Variation and association to diabetes in 2000 full mtDNA sequences mined from an exome study in a Danish population.

Eur J Hum Genet 2014 Aug 22;22(8):1040-5. Epub 2014 Jan 22.

1] Bioinformatics Research Centre, Aarhus University, C.F. Mollers Alle, 8000 Aarhus C, Denmark [2] Department of Bioscience, Aarhus University, Ny Munkegade, 8000 Aarhus C., Denmark.

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http://dx.doi.org/10.1038/ejhg.2013.282DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4350597PMC
August 2014

Association mapping and disease: evolutionary perspectives.

Methods Mol Biol 2012 ;856:275-91

deCODE Genetics, Reykjavik, Iceland.

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http://dx.doi.org/10.1007/978-1-61779-585-5_11DOI Listing
July 2012

European genome-wide association study identifies SLC14A1 as a new urinary bladder cancer susceptibility gene.

Hum Mol Genet 2011 Nov 12;20(21):4268-81. Epub 2011 Jul 12.

deCODE Genetics, Sturlugata 8, 101 Reykjavik, Iceland.

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http://dx.doi.org/10.1093/hmg/ddr303DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3188988PMC
November 2011

A multi-stage genome-wide association study of bladder cancer identifies multiple susceptibility loci.

Authors:
Nathaniel Rothman Montserrat Garcia-Closas Nilanjan Chatterjee Nuria Malats Xifeng Wu Jonine D Figueroa Francisco X Real David Van Den Berg Giuseppe Matullo Dalsu Baris Michael Thun Lambertus A Kiemeney Paolo Vineis Immaculata De Vivo Demetrius Albanes Mark P Purdue Thorunn Rafnar Michelle A T Hildebrandt Anne E Kiltie Olivier Cussenot Klaus Golka Rajiv Kumar Jack A Taylor Jose I Mayordomo Kevin B Jacobs Manolis Kogevinas Amy Hutchinson Zhaoming Wang Yi-Ping Fu Ludmila Prokunina-Olsson Laurie Burdett Meredith Yeager William Wheeler Adonina Tardón Consol Serra Alfredo Carrato Reina García-Closas Josep Lloreta Alison Johnson Molly Schwenn Margaret R Karagas Alan Schned Gerald Andriole Robert Grubb Amanda Black Eric J Jacobs W Ryan Diver Susan M Gapstur Stephanie J Weinstein Jarmo Virtamo Victoria K Cortessis Manuela Gago-Dominguez Malcolm C Pike Mariana C Stern Jian-Min Yuan David J Hunter Monica McGrath Colin P Dinney Bogdan Czerniak Meng Chen Hushan Yang Sita H Vermeulen Katja K Aben J Alfred Witjes Remco R Makkinje Patrick Sulem Soren Besenbacher Kari Stefansson Elio Riboli Paul Brennan Salvatore Panico Carmen Navarro Naomi E Allen H Bas Bueno-de-Mesquita Dimitrios Trichopoulos Neil Caporaso Maria Teresa Landi Federico Canzian Borje Ljungberg Anne Tjonneland Francoise Clavel-Chapelon David T Bishop Mark T W Teo Margaret A Knowles Simonetta Guarrera Silvia Polidoro Fulvio Ricceri Carlotta Sacerdote Alessandra Allione Geraldine Cancel-Tassin Silvia Selinski Jan G Hengstler Holger Dietrich Tony Fletcher Peter Rudnai Eugen Gurzau Kvetoslava Koppova Sophia C E Bolick Ashley Godfrey Zongli Xu José I Sanz-Velez María D García-Prats Manuel Sanchez Gabriel Valdivia Stefano Porru Simone Benhamou Robert N Hoover Joseph F Fraumeni Debra T Silverman Stephen J Chanock

Nat Genet 2010 Nov 24;42(11):978-84. Epub 2010 Oct 24.

Division of Cancer Epidemiology and Genetics, National Cancer Institute, Bethesda, Maryland, USA.

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http://dx.doi.org/10.1038/ng.687DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3049891PMC
November 2010

A genome-wide association study identifies susceptibility loci for ovarian cancer at 2q31 and 8q24.

Authors:
Ellen L Goode Georgia Chenevix-Trench Honglin Song Susan J Ramus Maria Notaridou Kate Lawrenson Martin Widschwendter Robert A Vierkant Melissa C Larson Susanne K Kjaer Michael J Birrer Andrew Berchuck Joellen Schildkraut Ian Tomlinson Lambertus A Kiemeney Linda S Cook Jacek Gronwald Montserrat Garcia-Closas Martin E Gore Ian Campbell Alice S Whittemore Rebecca Sutphen Catherine Phelan Hoda Anton-Culver Celeste Leigh Pearce Diether Lambrechts Mary Anne Rossing Jenny Chang-Claude Kirsten B Moysich Marc T Goodman Thilo Dörk Heli Nevanlinna Roberta B Ness Thorunn Rafnar Claus Hogdall Estrid Hogdall Brooke L Fridley Julie M Cunningham Weiva Sieh Valerie McGuire Andrew K Godwin Daniel W Cramer Dena Hernandez Douglas Levine Karen Lu Edwin S Iversen Rachel T Palmieri Richard Houlston Anne M van Altena Katja K H Aben Leon F A G Massuger Angela Brooks-Wilson Linda E Kelemen Nhu D Le Anna Jakubowska Jan Lubinski Krzysztof Medrek Anne Stafford Douglas F Easton Jonathan Tyrer Kelly L Bolton Patricia Harrington Diana Eccles Ann Chen Ashley N Molina Barbara N Davila Hector Arango Ya-Yu Tsai Zhihua Chen Harvey A Risch John McLaughlin Steven A Narod Argyrios Ziogas Wendy Brewster Aleksandra Gentry-Maharaj Usha Menon Anna H Wu Daniel O Stram Malcolm C Pike Jonathan Beesley Penelope M Webb Xiaoqing Chen Arif B Ekici Falk C Thiel Matthias W Beckmann Hannah Yang Nicolas Wentzensen Jolanta Lissowska Peter A Fasching Evelyn Despierre Frederic Amant Ignace Vergote Jennifer Doherty Rebecca Hein Shan Wang-Gohrke Galina Lurie Michael E Carney Pamela J Thompson Ingo Runnebaum Peter Hillemanns Matthias Dürst Natalia Antonenkova Natalia Bogdanova Arto Leminen Ralf Butzow Tuomas Heikkinen Kari Stefansson Patrick Sulem Sören Besenbacher Thomas A Sellers Simon A Gayther Paul D P Pharoah

Nat Genet 2010 Oct 19;42(10):874-9. Epub 2010 Sep 19.

Department of Health Sciences Research, Mayo Clinic College of Medicine, Rochester, Minnesota, USA.

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http://dx.doi.org/10.1038/ng.668DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3020231PMC
October 2010

Common variants at 19p13 are associated with susceptibility to ovarian cancer.

Authors:
Kelly L Bolton Jonathan Tyrer Honglin Song Susan J Ramus Maria Notaridou Chris Jones Tanya Sher Aleksandra Gentry-Maharaj Eva Wozniak Ya-Yu Tsai Joanne Weidhaas Daniel Paik David J Van Den Berg Daniel O Stram Celeste Leigh Pearce Anna H Wu Wendy Brewster Hoda Anton-Culver Argyrios Ziogas Steven A Narod Douglas A Levine Stanley B Kaye Robert Brown Jim Paul James Flanagan Weiva Sieh Valerie McGuire Alice S Whittemore Ian Campbell Martin E Gore Jolanta Lissowska Hanna P Yang Krzysztof Medrek Jacek Gronwald Jan Lubinski Anna Jakubowska Nhu D Le Linda S Cook Linda E Kelemen Angela Brooks-Wilson Angela Brook-Wilson Leon F A G Massuger Lambertus A Kiemeney Katja K H Aben Anne M van Altena Richard Houlston Ian Tomlinson Rachel T Palmieri Patricia G Moorman Joellen Schildkraut Edwin S Iversen Catherine Phelan Robert A Vierkant Julie M Cunningham Ellen L Goode Brooke L Fridley Susan Kruger-Kjaer Jan Blaeker Estrid Hogdall Claus Hogdall Jenny Gross Beth Y Karlan Roberta B Ness Robert P Edwards Kunle Odunsi Kirsten B Moyisch Julie A Baker Francesmary Modugno Tuomas Heikkinenen Ralf Butzow Heli Nevanlinna Arto Leminen Natalia Bogdanova Natalia Antonenkova Thilo Doerk Peter Hillemanns Matthias Dürst Ingo Runnebaum Pamela J Thompson Michael E Carney Marc T Goodman Galina Lurie Shan Wang-Gohrke Rebecca Hein Jenny Chang-Claude Mary Anne Rossing Kara L Cushing-Haugen Jennifer Doherty Chu Chen Thorunn Rafnar Soren Besenbacher Patrick Sulem Kari Stefansson Michael J Birrer Kathryn L Terry Dena Hernandez Daniel W Cramer Ignace Vergote Frederic Amant Diether Lambrechts Evelyn Despierre Peter A Fasching Matthias W Beckmann Falk C Thiel Arif B Ekici Xiaoqing Chen Sharon E Johnatty Penelope M Webb Jonathan Beesley Stephen Chanock Montserrat Garcia-Closas Tom Sellers Douglas F Easton Andrew Berchuck Georgia Chenevix-Trench Paul D P Pharoah Simon A Gayther

Nat Genet 2010 Oct 19;42(10):880-4. Epub 2010 Sep 19.

Department of Oncology, University of Cambridge, Cambridge, UK.

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http://dx.doi.org/10.1038/ng.666DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3125495PMC
October 2010

A sequence variant at 4p16.3 confers susceptibility to urinary bladder cancer.

Nat Genet 2010 May 28;42(5):415-9. Epub 2010 Mar 28.

Department of Epidemiology, Biostatistics and Health Technology Assessment, Nijmegen, The Netherlands.

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http://dx.doi.org/10.1038/ng.558DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2923020PMC
May 2010

Local phylogeny mapping of quantitative traits: higher accuracy and better ranking than single-marker association in genomewide scans.

Genetics 2009 Feb 8;181(2):747-53. Epub 2008 Dec 8.

Bioinformatics Research Center, University of Aarhus, DK-8000 Arhus C, Denmark.

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http://dx.doi.org/10.1534/genetics.108.092643DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2644962PMC
February 2009

A fast algorithm for genome-wide haplotype pattern mining.

BMC Bioinformatics 2009 Jan 30;10 Suppl 1:S74. Epub 2009 Jan 30.

Bioinformatics Research Center, University of Aarhus, Denmark.

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http://dx.doi.org/10.1186/1471-2105-10-S1-S74DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2648728PMC
January 2009

Whole genome association mapping by incompatibilities and local perfect phylogenies.

BMC Bioinformatics 2006 Oct 16;7:454. Epub 2006 Oct 16.

Department of Statistics, University of Oxford, UK.

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http://dx.doi.org/10.1186/1471-2105-7-454DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC1624851PMC
October 2006

RBT--a tool for building refined Buneman trees.

Bioinformatics 2005 Apr 7;21(8):1711-2. Epub 2004 Dec 7.

Bioinformatics Research Center, Department of Computer Science, University of Aarhus, Høegh-Guldbergs Gade 10, Building 090, DK-8000 Arhus C, Denmark.

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http://dx.doi.org/10.1093/bioinformatics/bti195DOI Listing
April 2005