Publications by authors named "Soizik Berlivet"

16Publications

PRC2-Associated Chromatin Contacts in the Developing Limb Reveal a Possible Mechanism for the Atypical Role of PRC2 in HoxA Gene Expression.

Dev Cell 2019 07 13;50(2):184-196.e4. Epub 2019 Jun 13.

Genetics and Development Research Unit, Institut de Recherches Cliniques de Montréal, Montréal, QC H2W 1R7, Canada; Department of Medicine, Division of Experimental Medicine, McGill University, Montréal, QC H4A 3J1, Canada; Department of Medicine, Université de Montréal, Montréal, QC H3T 1J4, Canada. Electronic address:

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http://dx.doi.org/10.1016/j.devcel.2019.05.021DOI Listing
July 2019

Readers of the mA epitranscriptomic code.

Biochim Biophys Acta Gene Regul Mech 2019 03 17;1862(3):329-342. Epub 2019 Jan 17.

LGDP-UMR5096 CNRS, 58 Av Paul Alduy, 66860 Perpignan, France; LGDP-UMR5096, Université de Perpignan, Via Domitia, 58 Av Paul Alduy, 66860 Perpignan, France. Electronic address:

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http://dx.doi.org/10.1016/j.bbagrm.2018.12.008DOI Listing
March 2019

Efficient Depletion of Essential Gene Products for Loss-of-Function Studies in Embryonic Stem Cells.

Methods Mol Biol 2017 ;1622:91-100

Institute for Integrative Biology of the Cell (I2BC), CEA, CNRS, Univ. Paris-Sud, Université Paris-Saclay, 91198, Gif-sur-Yvette, France.

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http://dx.doi.org/10.1007/978-1-4939-7108-4_7DOI Listing
March 2018

Analysis of long-range interactions in primary human cells identifies cooperative CFTR regulatory elements.

Nucleic Acids Res 2016 Apr 28;44(6):2564-76. Epub 2015 Nov 28.

Laboratoire de Génétique Moléculaire et d'Histocompatibilité, Inserm U1078, Université de Brest, SFR ScInBioS, CHRU de Brest, Établissement Français du Sang - Bretagne, Brest, France

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http://dx.doi.org/10.1093/nar/gkv1300DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4824072PMC
April 2016

Whole-genome sequencing identifies EN1 as a determinant of bone density and fracture.

Authors:
Hou-Feng Zheng Vincenzo Forgetta Yi-Hsiang Hsu Karol Estrada Alberto Rosello-Diez Paul J Leo Chitra L Dahia Kyung Hyun Park-Min Jonathan H Tobias Charles Kooperberg Aaron Kleinman Unnur Styrkarsdottir Ching-Ti Liu Charlotta Uggla Daniel S Evans Carrie M Nielson Klaudia Walter Ulrika Pettersson-Kymmer Shane McCarthy Joel Eriksson Tony Kwan Mila Jhamai Katerina Trajanoska Yasin Memari Josine Min Jie Huang Petr Danecek Beth Wilmot Rui Li Wen-Chi Chou Lauren E Mokry Alireza Moayyeri Melina Claussnitzer Chia-Ho Cheng Warren Cheung Carolina Medina-Gómez Bing Ge Shu-Huang Chen Kwangbom Choi Ling Oei James Fraser Robert Kraaij Matthew A Hibbs Celia L Gregson Denis Paquette Albert Hofman Carl Wibom Gregory J Tranah Mhairi Marshall Brooke B Gardiner Katie Cremin Paul Auer Li Hsu Sue Ring Joyce Y Tung Gudmar Thorleifsson Anke W Enneman Natasja M van Schoor Lisette C P G M de Groot Nathalie van der Velde Beatrice Melin John P Kemp Claus Christiansen Adrian Sayers Yanhua Zhou Sophie Calderari Jeroen van Rooij Chris Carlson Ulrike Peters Soizik Berlivet Josée Dostie Andre G Uitterlinden Stephen R Williams Charles Farber Daniel Grinberg Andrea Z LaCroix Jeff Haessler Daniel I Chasman Franco Giulianini Lynda M Rose Paul M Ridker John A Eisman Tuan V Nguyen Jacqueline R Center Xavier Nogues Natalia Garcia-Giralt Lenore L Launer Vilmunder Gudnason Dan Mellström Liesbeth Vandenput Najaf Amin Cornelia M van Duijn Magnus K Karlsson Östen Ljunggren Olle Svensson Göran Hallmans François Rousseau Sylvie Giroux Johanne Bussière Pascal P Arp Fjorda Koromani Richard L Prince Joshua R Lewis Bente L Langdahl A Pernille Hermann Jens-Erik B Jensen Stephen Kaptoge Kay-Tee Khaw Jonathan Reeve Melissa M Formosa Angela Xuereb-Anastasi Kristina Åkesson Fiona E McGuigan Gaurav Garg Jose M Olmos Maria T Zarrabeitia Jose A Riancho Stuart H Ralston Nerea Alonso Xi Jiang David Goltzman Tomi Pastinen Elin Grundberg Dominique Gauguier Eric S Orwoll David Karasik George Davey-Smith Albert V Smith Kristin Siggeirsdottir Tamara B Harris M Carola Zillikens Joyce B J van Meurs Unnur Thorsteinsdottir Matthew T Maurano Nicholas J Timpson Nicole Soranzo Richard Durbin Scott G Wilson Evangelia E Ntzani Matthew A Brown Kari Stefansson David A Hinds Tim Spector L Adrienne Cupples Claes Ohlsson Celia M T Greenwood Rebecca D Jackson David W Rowe Cynthia A Loomis David M Evans Cheryl L Ackert-Bicknell Alexandra L Joyner Emma L Duncan Douglas P Kiel Fernando Rivadeneira J Brent Richards

Nature 2015 Oct 14;526(7571):112-7. Epub 2015 Sep 14.

Departments of Medicine, Human Genetics, Epidemiology and Biostatistics, McGill University, Montréal H3A 1A2, Canada.

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http://dx.doi.org/10.1038/nature14878DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4755714PMC
October 2015

Distinct polymer physics principles govern chromatin dynamics in mouse and Drosophila topological domains.

BMC Genomics 2015 Aug 15;16:607. Epub 2015 Aug 15.

Institut de Génétique Moléculaire de Montpellier, UMR5535, CNRS, Université de Montpellier, 1919 Route de Mende, 34293, Montpellier, Cedex 5, France.

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http://dx.doi.org/10.1186/s12864-015-1786-8DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4536789PMC
August 2015

Spatial genome organization: contrasting views from chromosome conformation capture and fluorescence in situ hybridization.

Genes Dev 2014 Dec;28(24):2778-91

MRC Human Genetics Unit, Institute of Genetics and Molecular Medicine, University of Edinburgh, Edinburgh EH4 2XU, United Kingdom;

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http://dx.doi.org/10.1101/gad.251694.114DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4265680PMC
December 2014

Clustering of tissue-specific sub-TADs accompanies the regulation of HoxA genes in developing limbs.

PLoS Genet 2013 26;9(12):e1004018. Epub 2013 Dec 26.

Unité de génétique et développement, Institut de recherches cliniques de Montréal, Montréal, Québec, Canada ; Department of Medicine, University of Montréal, Montréal, Québec, Canada.

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https://dx.plos.org/10.1371/journal.pgen.1004018
Publisher Site
http://dx.doi.org/10.1371/journal.pgen.1004018DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3873244PMC
August 2014

Loss-of-function studies in mouse embryonic stem cells using the pHYPER shRNA plasmid vector.

Methods Mol Biol 2010 ;650:85-100

Epigenetic Regulation and Cancer Group, CEA, iBiTecS, Gif-sur-Yvette Cedex, France.

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http://dx.doi.org/10.1007/978-1-60761-769-3_7DOI Listing
December 2010

Defective imprint resetting in carriers of Robertsonian translocation Rb (8.12).

Mamm Genome 2010 Aug 25;21(7-8):377-87. Epub 2010 Jun 25.

Department of Human Genetics, McGill University, Montreal, QC, Canada.

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http://link.springer.com/10.1007/s00335-010-9271-9
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http://dx.doi.org/10.1007/s00335-010-9271-9DOI Listing
August 2010

pHYPER, a shRNA vector for high-efficiency RNA interference in embryonic stem cells.

Biotechniques 2007 Jun;42(6):738, 740-3

Commissariat a l'Energie Atomique (CEA), Institut de Biologie et Technologies de Saclay (iBiTecS), Epigenetic Regulation and Cancer Group, Cif-sur-Yvette, France.

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http://dx.doi.org/10.2144/000112454DOI Listing
June 2007

CAF-1 is essential for heterochromatin organization in pluripotent embryonic cells.

PLoS Genet 2006 Nov 11;2(11):e181. Epub 2006 Sep 11.

Epigenetic Regulation and Cancer Group, Service de Biologie Moléculaire Systémique, Département de Biologie Joliot-Curie, Direction des Sciences du Vivant, Commissariat à l'Energie Atomique, CEA Saclay, Gif-sur-Yvette, France.

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http://dx.doi.org/10.1371/journal.pgen.0020181DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC1630711PMC
November 2006