Publications by authors named "Sithichoke Tangphatsornruang"

68Publications

Assembly of the durian chloroplast genome using long PacBio reads.

Sci Rep 2020 Oct 7;10(1):15980. Epub 2020 Oct 7.

National Omics Center, National Science and Technology Development Agency, 111 Thailand Science Park, Paholyothin Road, Khlong Nueng, Khlong Luang, Pathumthani, 12120, Thailand.

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http://dx.doi.org/10.1038/s41598-020-73549-4DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC7541610PMC
October 2020

The Genome and Transcriptome Analysis of the Chloroplast.

Plants (Basel) 2020 Sep 21;9(9). Epub 2020 Sep 21.

National Omics Center (NOC), National Science and Technology Development Agency, 111 Thailand Science Park, Khlong Nueng, Khlong Luang, Pathum Thani 12120, Thailand.

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http://dx.doi.org/10.3390/plants9091247DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC7570002PMC
September 2020

A chromosome-scale assembly of the black gram (Vigna mungo) genome.

Mol Ecol Resour 2020 Aug 13. Epub 2020 Aug 13.

National Omics Center, National Science and Technology Development Agency (NSTDA), Pathum Thani, Thailand.

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http://dx.doi.org/10.1111/1755-0998.13243DOI Listing
August 2020

Comparative analysis of bacterial communities associated with healthy and diseased corals in the Indonesian sea.

PeerJ 2019 19;7:e8137. Epub 2019 Dec 19.

Biorefinery and Bioproduct Technology Research Group, National Center for Genetic Engineering and Biotechnology, Pathum Thani, Thailand.

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http://dx.doi.org/10.7717/peerj.8137DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6925950PMC
December 2019

Heat-induced shift in coral microbiome reveals several members of the Rhodobacteraceae family as indicator species for thermal stress in Porites lutea.

Microbiologyopen 2019 12 23;8(12):e935. Epub 2019 Sep 23.

National Omics Center, National Center for Genetic Engineering and Biotechnology (BIOTEC), National Science and Technology Development Agency (NSTDA), Pathum Thani, Thailand.

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http://dx.doi.org/10.1002/mbo3.935DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6925168PMC
December 2019

Rice height QTLs in KDML105 chromosome segment substitution lines.

Genomics 2019 Sep 6. Epub 2019 Sep 6.

Integrative crop biotechnology and management research group, Sub-pillar Bioscience and Biotechnology for Agriculture, National Center for Genetic Engineering and Biotechnology, 113 Thailand Science Park, Paholyothin Road, Khlong Nueng, Khlong Luang, Pathumthani 12120, Thailand.

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http://dx.doi.org/10.1016/j.ygeno.2019.09.003DOI Listing
September 2019

Shotgun metagenomic sequencing from Manao-Pee cave, Thailand, reveals insight into the microbial community structure and its metabolic potential.

BMC Microbiol 2019 06 27;19(1):144. Epub 2019 Jun 27.

Institute of Molecular Biosciences, Mahidol University, Salaya Campus, Phuttamonthon 4 Rd, Salaya, Nakhon Pathom, 73170, Thailand.

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http://dx.doi.org/10.1186/s12866-019-1521-8DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6598295PMC
June 2019

Complete Genome Sequences of Four Serotypes of Dengue Virus Prototype Continuously Maintained in the Laboratory.

Microbiol Resour Announc 2019 May 9;8(19). Epub 2019 May 9.

Division of Bioinformatics and Data Management for Research, Research Group and Research Network Division, Faculty of Medicine Siriraj Hospital, Mahidol University, Bangkok, Thailand

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http://dx.doi.org/10.1128/MRA.00199-19DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6509522PMC
May 2019

Dynamics of biogenic amines and bacterial communities in a Thai fermented pork product Nham.

Food Res Int 2019 05 24;119:110-118. Epub 2019 Jan 24.

National Center for Genetic Engineering and Biotechnology (BIOTEC), 113 Thailand Science Park, Phahonyothin Road, Khlong Nueng, Khlong Luang, Pathum Thani 12120, Thailand. Electronic address:

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http://dx.doi.org/10.1016/j.foodres.2019.01.060DOI Listing
May 2019

Transcriptome analysis of oil palm inflorescences revealed candidate genes for an auxin signaling pathway involved in parthenocarpy.

PeerJ 2018 17;6:e5975. Epub 2018 Dec 17.

National Center for Genetic Engineering and Biotechnology (BIOTEC), National Science and Technology Development Agency, Pathum Thani, Thailand.

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http://dx.doi.org/10.7717/peerj.5975DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6301279PMC
December 2018

Genome-wide association mapping of virulence gene in rice blast fungus Magnaporthe oryzae using a genotyping by sequencing approach.

Genomics 2019 07 15;111(4):661-668. Epub 2018 May 15.

National Center for Genetic Engineering and Biotechnology (BIOTEC), 113 Thailand Science Park, Pahonyothin Road, Khlong Nueng, Khlong Luang, PathumThani 12120, Thailand. Electronic address:

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https://linkinghub.elsevier.com/retrieve/pii/S08887543183000
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http://dx.doi.org/10.1016/j.ygeno.2018.05.011DOI Listing
July 2019

Dynamics of coral-associated microbiomes during a thermal bleaching event.

Microbiologyopen 2018 10 23;7(5):e00604. Epub 2018 Mar 23.

National Center for Genetic Engineering and Biotechnology (BIOTEC), National Science and Technology Development Agency, Pathum Thani, Thailand.

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http://doi.wiley.com/10.1002/mbo3.604
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http://dx.doi.org/10.1002/mbo3.604DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6182559PMC
October 2018

Characterization of cellulolytic microbial consortium enriched on Napier grass using metagenomic approaches.

J Biosci Bioeng 2018 Apr 21;125(4):439-447. Epub 2017 Nov 21.

Enzyme Technology Laboratory, National Center for Genetic Engineering and Biotechnology, 113 Thailand Science Park, Pahonyothin Road, Klong Luang, Pathum Thani 12120, Thailand.

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https://linkinghub.elsevier.com/retrieve/pii/S13891723173046
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http://dx.doi.org/10.1016/j.jbiosc.2017.10.014DOI Listing
April 2018

Transcriptome-based discovery of pathways and genes related to reproduction of the black tiger shrimp (Penaeus monodon).

Mar Genomics 2018 Feb 9;37:69-73. Epub 2017 Sep 9.

National Center for Genetic Engineering and Biotechnology (BIOTEC), National Science and Technology Development Agency, Khlong Nueung, Khlong Luang, Pathum Thani 12120, Thailand. Electronic address:

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http://dx.doi.org/10.1016/j.margen.2017.08.007DOI Listing
February 2018

Microbial communities in the reef water at Kham Island, lower Gulf of Thailand.

PeerJ 2017 14;5:e3625. Epub 2017 Aug 14.

Genome Technology Research Unit, National Center for Genetic Engineering and Biotechnology, Pathum Thani, Thailand.

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http://dx.doi.org/10.7717/peerj.3625DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5560237PMC
August 2017

Genome-wide association mapping of latex yield and girth in Amazonian accessions of Hevea brasiliensis grown in a suboptimal climate zone.

Genomics 2017 10 24;109(5-6):475-484. Epub 2017 Jul 24.

Department of Biotechnology, Faculty of Science and Technology, Thammasat University, Rangsit Campus, Klong Luang, Pathumtani 12121, Thailand. Electronic address:

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http://dx.doi.org/10.1016/j.ygeno.2017.07.005DOI Listing
October 2017

Targeted disruption of the polyketide synthase gene pks15 affects virulence against insects and phagocytic survival in the fungus Beauveria bassiana.

Fungal Biol 2017 08 6;121(8):664-675. Epub 2017 May 6.

National Center for Genetic Engineering and Biotechnology, National Science and Technology Development Agency, 113 Paholyothin Road, Klong 1, Klong Luang, Pathumthani 12120, Thailand. Electronic address:

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https://linkinghub.elsevier.com/retrieve/pii/S18786146173004
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http://dx.doi.org/10.1016/j.funbio.2017.04.007DOI Listing
August 2017

De novo hybrid assembly of the rubber tree genome reveals evidence of paleotetraploidy in Hevea species.

Sci Rep 2017 02 2;7:41457. Epub 2017 Feb 2.

National Center for Genetic Engineering and Biotechnology (BIOTEC), National Science and Technology Development Agency, Pathum Thani, Thailand.

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http://dx.doi.org/10.1038/srep41457DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5288721PMC
February 2017

Effect of freeze-thaw process on physical properties, microbial activities and population structures of anaerobic sludge.

J Biosci Bioeng 2017 Apr 19;123(4):474-481. Epub 2016 Dec 19.

Department of Agro-Industrial Technology, Faculty of Applied Science, King Mongkut's University of Technology North Bangkok, Bangsue, Bangkok 10800, Thailand.

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http://dx.doi.org/10.1016/j.jbiosc.2016.11.005DOI Listing
April 2017

Plasmid metagenomics reveals multiple antibiotic resistance gene classes among the gut microbiomes of hospitalised patients.

J Glob Antimicrob Resist 2016 09 19;6:57-66. Epub 2016 Apr 19.

Department of Microbiology, Faculty of Medicine Siriraj Hospital, Mahidol University, Bangkok, Thailand. Electronic address:

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http://dx.doi.org/10.1016/j.jgar.2016.03.001DOI Listing
September 2016

The two chromosomes of the mitochondrial genome of a sugarcane cultivar: assembly and recombination analysis using long PacBio reads.

Sci Rep 2016 08 17;6:31533. Epub 2016 Aug 17.

National Center for Genetic Engineering and Biotechnology, 113 Thailand Science Park, Paholyothin Road, Khlong Nueng, Khlong Luang, Pathumthani, 12120, Thailand.

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http://www.nature.com/articles/srep31533
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http://dx.doi.org/10.1038/srep31533DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4987617PMC
August 2016

Differentially expressed transcripts in stomach of Penaeus monodon in response to AHPND infection.

Dev Comp Immunol 2016 12 20;65:53-63. Epub 2016 Jun 20.

Aquatic Molecular Genetics and Biotechnology Laboratory, National Center for Genetic Engineering and Biotechnology (BIOTEC), National Science and Technology Development Agency (NSTDA), 113 Paholyothin Rd., Klong 1, Klong Luang, Pathumthani 12120, Thailand.

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http://dx.doi.org/10.1016/j.dci.2016.06.013DOI Listing
December 2016

Comparative Study of Bacterial Communities in Nepenthes Pitchers and Their Correlation to Species and Fluid Acidity.

Microb Ecol 2016 08 10;72(2):381-93. Epub 2016 Jun 10.

Enzyme Technology Laboratory, Bioresources Technology Unit, National Center for Genetic Engineering and Biotechnology (BIOTEC), 113 Thailand Science Park, Paholyothin Road, Khlong Luang, Pathumthani, 12120, Thailand.

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http://dx.doi.org/10.1007/s00248-016-0798-5DOI Listing
August 2016

ACC oxidase and miRNA 159a, and their involvement in fresh fruit bunch yield (FFB) via sex ratio determination in oil palm.

Mol Genet Genomics 2016 Jun 20;291(3):1243-57. Epub 2016 Feb 20.

National Center for Genetic Engineering and Biotechnology (BIOTEC), 113 Thailand Science Park, Phaholyothin Road, Klong Nueng, Klong Luang, Pathum Thani, 12120, Thailand.

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http://link.springer.com/10.1007/s00438-016-1181-4
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http://dx.doi.org/10.1007/s00438-016-1181-4DOI Listing
June 2016

Insights from the genome of Ophiocordyceps polyrhachis-furcata to pathogenicity and host specificity in insect fungi.

BMC Genomics 2015 Oct 28;16:881. Epub 2015 Oct 28.

National Center for Genetic Engineering and Biotechnology, National Science and Technology Development Agency, 113 Thailand Science Park, Phahonyothin Rd., Khlong Neung, Khlong Luang, 12120, Pathum Thani, Thailand.

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http://dx.doi.org/10.1186/s12864-015-2101-4DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4625970PMC
October 2015

A single base substitution in BADH/AMADH is responsible for fragrance in cucumber (Cucumis sativus L.), and development of SNAP markers for the fragrance.

Theor Appl Genet 2015 Sep 17;128(9):1881-92. Epub 2015 Jun 17.

Program in Plant Breeding, Faculty of Agriculture at Kamphaeng Saen, Kasetsart University, Kamphaeng Saen, Nakhon Pathom, 73140, Thailand.

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http://dx.doi.org/10.1007/s00122-015-2554-5DOI Listing
September 2015

Comparative analysis of sugarcane bagasse metagenome reveals unique and conserved biomass-degrading enzymes among lignocellulolytic microbial communities.

Biotechnol Biofuels 2015 8;8:16. Epub 2015 Feb 8.

Enzyme Technology Laboratory, Bioresources Technology Unit, National Center for Genetic Engineering and Biotechnology (BIOTEC), Thailand Science Park, Pathumthani, 12120 Thailand.

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http://dx.doi.org/10.1186/s13068-015-0200-8DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4337096PMC
February 2015

Genome-wide SNP discovery and identification of QTL associated with agronomic traits in oil palm using genotyping-by-sequencing (GBS).

Genomics 2015 May 20;105(5-6):288-95. Epub 2015 Feb 20.

National Center for Genetic Engineering and Biotechnology, 113 Thailand Science Park, Pathum Thani 12120, Thailand. Electronic address:

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http://dx.doi.org/10.1016/j.ygeno.2015.02.002DOI Listing
May 2015

The AKR gene family and modifying sex ratios in palms through abiotic stress responsiveness.

Funct Integr Genomics 2015 May 12;15(3):349-62. Epub 2014 Dec 12.

National Center for Genetic Engineering and Biotechnology (BIOTEC), 113 Thailand Science Park, Phaholyothin Road, Klong Nueng, Klong Luang, Pathum Thani, 12120, Thailand,

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http://dx.doi.org/10.1007/s10142-014-0423-yDOI Listing
May 2015

Characterization of rubber tree microRNA in phytohormone response using large genomic DNA libraries, promoter sequence and gene expression analysis.

Mol Genet Genomics 2014 Oct 26;289(5):921-33. Epub 2014 May 26.

Department of Biotechnology, Faculty of Science, Mahidol University, Rama 6 Rd, Rajthewee, Bangkok, 10400, Thailand.

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http://dx.doi.org/10.1007/s00438-014-0862-0DOI Listing
October 2014

Determination of the half-life of chloroplast transcripts in tobacco leaves.

Methods Mol Biol 2014 ;1132:221-34

National Center for Genetic Engineering and Biotechnology, Klong Luang, Pathumthani, Thailand.

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http://dx.doi.org/10.1007/978-1-62703-995-6_13DOI Listing
November 2014

Assembly and analysis of a male sterile rubber tree mitochondrial genome reveals DNA rearrangement events and a novel transcript.

BMC Plant Biol 2014 Feb 10;14:45. Epub 2014 Feb 10.

National Center for Genetic Engineering and Biotechnology, 113 Thailand Science Park, Paholyothin Road, Khlong Nueng, Khlong Luang, Pathumthani 12120, Thailand.

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http://dx.doi.org/10.1186/1471-2229-14-45DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3925788PMC
February 2014

Gene discovery and functional marker development for fragrance in sorghum (Sorghum bicolor (L.) Moench).

Theor Appl Genet 2013 Nov 22;126(11):2897-906. Epub 2013 Aug 22.

Program in Plant Breeding, Faculty of Agriculture at Kamphaeng Saen, Kasetsart University, Kamphaeng Saen, Nakhon Pathom, 73140, Thailand.

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http://dx.doi.org/10.1007/s00122-013-2180-zDOI Listing
November 2013

Phylogenetic analysis and metabolic potential of microbial communities in an industrial bagasse collection site.

Microb Ecol 2013 Aug 17;66(2):322-34. Epub 2013 Mar 17.

Enzyme Technology Laboratory, Bioresources Technology Unit, National Center for Genetic Engineering and Biotechnology (BIOTEC), 113 Thailand Science Park, Paholyothin Road, Klong Luang, Pathumthani, 12120, Thailand.

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http://dx.doi.org/10.1007/s00248-013-0209-0DOI Listing
August 2013

Transcriptome analysis of normal and mantled developing oil palm flower and fruit.

Genomics 2013 May 5;101(5):306-12. Epub 2013 Mar 5.

National Center for Genetic Engineering and Biotechnology, 113 Phahonyothin Road, Klong 1, Klong Luang, Pathumthani 12120, Thailand.

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http://dx.doi.org/10.1016/j.ygeno.2013.02.012DOI Listing
May 2013

Comparative analysis of microbial profiles in cow rumen fed with different dietary fiber by tagged 16S rRNA gene pyrosequencing.

Curr Microbiol 2013 Aug 8;67(2):130-7. Epub 2013 Mar 8.

Enzyme Technology Laboratory, Bioresources Technology Unit, National Center for Genetic Engineering and Biotechnology (BIOTEC), 113 Thailand Science Park, Paholyothin Road, Khlong Luang, Pathumthani, 12120, Thailand.

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http://dx.doi.org/10.1007/s00284-013-0336-3DOI Listing
August 2013

Comparative metagenomic analysis of microcosm structures and lignocellulolytic enzyme systems of symbiotic biomass-degrading consortia.

Appl Microbiol Biotechnol 2013 Oct 5;97(20):8941-54. Epub 2013 Feb 5.

Enzyme Technology Laboratory, Bioresources Technology Unit, National Center for Genetic Engineering and Biotechnology, 113 Thailand Science Park, Klong Luang, Pathum Thani, 12120, Thailand.

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http://dx.doi.org/10.1007/s00253-013-4699-yDOI Listing
October 2013

Metagenomic profiles of free-living archaea, bacteria and small eukaryotes in coastal areas of Sichang island, Thailand.

BMC Genomics 2012 13;13 Suppl 7:S29. Epub 2012 Dec 13.

Department of Microbiology, Faculty of Science, Chulalongkorn University, Bangkok 10330, Thailand.

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http://dx.doi.org/10.1186/1471-2164-13-S7-S29DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3521234PMC
June 2013

Feasibility of using 454 pyrosequencing for studying quasispecies of the whole dengue viral genome.

BMC Genomics 2012 13;13 Suppl 7:S7. Epub 2012 Dec 13.

Bioinformatics and Data Management for Research Unit, Office for Research and Development, Faculty of Medicine Siriraj Hospital, Mahidol University, Thailand.

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http://dx.doi.org/10.1186/1471-2164-13-S7-S7DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3521222PMC
June 2013

Single nucleotide polymorphism marker development in the rubber tree, Hevea brasiliensis (Euphorbiaceae).

Am J Bot 2011 Nov 24;98(11):e337-8. Epub 2011 Oct 24.

National Center for Genetic Engineering and Biotechnology, 113 Phaholyothin Rd., Klong 1, Klong Luang, Pathumthani 12120 Thailand.

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http://dx.doi.org/10.3732/ajb.1100228DOI Listing
November 2011

Sequencing and analysis of three plasmids from Lactobacillus casei TISTR1341 and development of plasmid-derived Escherichia coli-L. casei shuttle vectors.

Appl Microbiol Biotechnol 2012 Jan 7;93(1):261-72. Epub 2011 Aug 7.

Research and Diagnostic Center for Emerging Infectious Diseases (RCEID), Faculty of Medicine, Khon Kaen University, Khon Kaen, Thailand.

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http://dx.doi.org/10.1007/s00253-011-3503-0DOI Listing
January 2012

The effect of different 3' untranslated regions on the accumulation and stability of transcripts of a gfp transgene in chloroplasts of transplastomic tobacco.

Plant Mol Biol 2011 Jul 22;76(3-5):385-96. Epub 2010 Sep 22.

Department of Plant Sciences, University of Cambridge, Downing Street, Cambridge CB2 3EA, UK.

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http://dx.doi.org/10.1007/s11103-010-9689-1DOI Listing
July 2011

Development of simple sequence repeat markers from expressed sequence tags of the black tiger shrimp (Penaeus monodon).

Mol Ecol Resour 2008 Nov;8(6):1494-6

Institute of Molecular Biology and Genetics, Mahidol University, Salaya, Nakhonpathom 73170, Thailand, National Center for Genetic Engineering and Biotechnology, 113 Phaholyothin Road, Klong 1, Klong Luang, Pathumthani 12120, Thailand, Center for Cassava Molecular Biotechnology, Faculty of Science, Mahidol University, Bangkok 10400, Thailand.

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http://dx.doi.org/10.1111/j.1755-0998.2008.02290.xDOI Listing
November 2008

Isolation and characterization of an alpha-amylase gene in cassava (Manihot esculenta).

Plant Physiol Biochem 2005 Sep 4;43(9):821-7. Epub 2005 Oct 4.

National Center for Genetic Engineering and Biotechnology, 113 Phaholyothin Road, Klong 1, Klong Luang, Pathumthani 12120, Thailand.

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http://dx.doi.org/10.1016/j.plaphy.2005.07.014DOI Listing
September 2005