Publications by authors named "Sisi Ma"

65Publications

Developing a data-driven algorithm for guiding selection between cognitive behavioral therapy, fluoxetine, and combination treatment for adolescent depression.

Transl Psychiatry 2020 Sep 21;10(1):321. Epub 2020 Sep 21.

Institute of Health Informatics, School of Medicine, University of Minnesota, Minneapolis, MN, USA.

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September 2020

AAV-Mediated ApoC2 Gene Therapy: Reversal of Severe Hypertriglyceridemia and Rescue of Neonatal Death in ApoC2-Deficient Hamsters.

Mol Ther Methods Clin Dev 2020 Sep 15;18:692-701. Epub 2020 Jul 15.

Institute of Cardiovascular Sciences and Key Laboratory of Molecular Cardiovascular Sciences, Ministry of Education, Peking University, Beijing 100191, China.

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September 2020

Computational causal discovery for post-traumatic stress in police officers.

Transl Psychiatry 2020 08 11;10(1):233. Epub 2020 Aug 11.

Department of Psychiatry, New York University School of Medicine, New York, NY, USA.

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August 2020

Pontederia cordata, an ornamental aquatic macrophyte with great potential in phytoremediation of heavy-metal-contaminated wetlands.

Ecotoxicol Environ Saf 2020 Oct 23;203:111024. Epub 2020 Jul 23.

College of Architeture Landscape, Nanjing Forestry University, Nanjing, 210037, Jiangsu, China. Electronic address:

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October 2020

Cadmium phytotoxicity, related physiological changes in Pontederia cordata: antioxidative, osmoregulatory substances, phytochelatins, photosynthesis, and chlorophyll fluorescence.

Environ Sci Pollut Res Int 2020 Nov 20;27(33):41596-41608. Epub 2020 Jul 20.

College of Landscape Architecture, Nanjing Forestry University, Nanjing, 210037, Jiangsu, China.

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November 2020

ApoC2 deficiency elicits severe hypertriglyceridemia and spontaneous atherosclerosis: A rodent model rescued from neonatal death.

Metabolism 2020 08 17;109:154296. Epub 2020 Jun 17.

Institute of Cardiovascular Sciences and Key Laboratory of Molecular Cardiovascular Sciences, Ministry of Education, Peking University, Beijing, China. Electronic address:

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August 2020

Cognitive Control Errors in Nonhuman Primates Resembling Those in Schizophrenia Reflect Opposing Effects of NMDA Receptor Blockade on Causal Interactions Between Cells and Circuits in Prefrontal and Parietal Cortices.

Biol Psychiatry Cogn Neurosci Neuroimaging 2020 07 8;5(7):705-714. Epub 2020 Apr 8.

Department of Neuroscience, University of Minnesota, Minneapolis, Minnesota; Brain Sciences Center, Veterans Administration Medical Center, Minneapolis, Minnesota. Electronic address:

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July 2020

Challenges and Opportunities with Causal Discovery Algorithms: Application to Alzheimer's Pathophysiology.

Sci Rep 2020 02 19;10(1):2975. Epub 2020 Feb 19.

Institute for Health Informatics, University of Minnesota, Minneapolis, MN, 55455, USA.

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February 2020

Prenatal Plasma Fibrinogen Level Predicts Postpartum Hemorrhage of Patients With HELLP Syndrome.

Clin Appl Thromb Hemost 2020 Jan-Dec;26:1076029619894057

Department of Laboratory Medicine, Peking University Third Hospital, Haidian District, Beijing, China.

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October 2020

Extracting Pathway-level Signatures from Proteogenomic Data in Breast Cancer Using Independent Component Analysis.

Mol Cell Proteomics 2019 Aug 9;18(8S1):S169-S182. Epub 2020 Oct 9.

Institute for System Genetics, NYU School of Medicine, New York, New York 10016; Department of Biochemistry and Molecular Pharmacology, NYU School of Medicine, New York, New York 10016. Electronic address:

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August 2019

Modification of Supramolecular Membranes with 3D Hydrophilic Slide-Rings for the Improvement of Antifouling Properties and Effective Separation.

ACS Appl Mater Interfaces 2019 Aug 24;11(31):28527-28537. Epub 2019 Jul 24.

State Key Laboratory of Separation Membranes and Membrane Processes , Tianjin Polytechnic University , Tianjin 300387 , P. R. China.

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August 2019

Extracting Pathway-level Signatures from Proteogenomic Data in Breast Cancer Using Independent Component Analysis.

Mol Cell Proteomics 2019 08 18;18(8 suppl 1):S169-S182. Epub 2019 Jun 18.

‡Institute for System Genetics, NYU School of Medicine, New York, New York 10016

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August 2019

Bioinspired EVAL membrane modified with cilia-like structures showing simultaneously enhanced permeability and antifouling properties.

Colloids Surf B Biointerfaces 2019 Sep 13;181:134-142. Epub 2019 May 13.

State Key Laboratory of Separation Membranes and Membrane Processes, Tianjin Polytechnic University, Tianjin, 300387, PR China.

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September 2019

Multiple Factors Drive Opioid Prescribing at the Time of Discharge.

AMIA Annu Symp Proc 2018 5;2018:916-921. Epub 2018 Dec 5.

Institute for Health Informatics, University of Minnesota, Minneapolis, MN.

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December 2019

Development of a model to predict 5-year risk of severe hypoglycemia in patients with type 2 diabetes.

BMJ Open Diabetes Res Care 2018 12;6(1):e000527. Epub 2018 Aug 12.

Division of Epidemiology and Community Health, University of Minnesota School of Public Health, Saint Paul, Minnesota, USA.

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August 2018

Discovering and identifying New York heart association classification from electronic health records.

BMC Med Inform Decis Mak 2018 07 23;18(Suppl 2):48. Epub 2018 Jul 23.

Institute for Health Informatics, University of Minnesota, Minneapolis, MN, USA.

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July 2018

Automatic Methods to Extract New York Heart Association Classification from Clinical Notes.

Proceedings (IEEE Int Conf Bioinformatics Biomed) 2017 Nov 18;2017:1296-1299. Epub 2017 Dec 18.

Institute for Health Informatics, University of Minnesota, Minneapolis, MN, USA.

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November 2017

A Method for Quantifying Molecular Interactions Using Stochastic Modelling and Super-Resolution Microscopy.

Sci Rep 2017 11 1;7(1):14882. Epub 2017 Nov 1.

Department of Biochemistry and Molecular Pharmacology, New York University School of Medicine, New York, NY, USA.

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November 2017

Combination of AAV-TRAIL with miR-221-Zip Therapeutic Strategy Overcomes the Resistance to TRAIL Induced Apoptosis in Liver Cancer.

Theranostics 2017 22;7(13):3228-3242. Epub 2017 Jul 22.

National Laboratory of Medical Molecular Biology, Institute of Basic Medical Sciences, Chinese Academy of Medical Sciences & Peking Union Medical College, Beijing 100005, China.

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July 2018

Machine learning methods to predict child posttraumatic stress: a proof of concept study.

BMC Psychiatry 2017 07 10;17(1):223. Epub 2017 Jul 10.

Institute for Health Informatics, Department of Medicine, and Data Science Program, University of Minnesota, Minneapolis, MN, USA.

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July 2017

In Situ Hot-Spot Assembly as a General Strategy for Probing Single Biomolecules.

Anal Chem 2017 05 12;89(9):4776-4780. Epub 2017 Apr 12.

College of Chemistry, Research Center for Analytical Sciences, State Key Laboratory of Medicinal Chemical Biology, and Tianjin Key Laboratory of Molecular Recognition and Biosensing, Nankai University , Tianjin 300071, China.

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May 2017

A First Step towards a Clinical Decision Support System for Post-traumatic Stress Disorders.

AMIA Annu Symp Proc 2016 10;2016:837-843. Epub 2017 Feb 10.

New York University School of Medicine, NY, NY, USA.

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August 2017

Prussian Blue as a Highly Sensitive and Background-Free Resonant Raman Reporter.

Anal Chem 2017 02 20;89(3):1551-1557. Epub 2017 Jan 20.

State Key Laboratory of Medicinal Chemical Biology, College of Pharmacy, College of Chemistry, Research Center for Analytical Sciences, and Tianjin Key Laboratory of Molecular Recognition and Biosensing, Nankai University , Tianjin 300071, China.

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February 2017

Interference-Free Surface-Enhanced Raman Scattering Tags for Single-Cell Molecular Imaging with a High Signal-to-Background Ratio.

Small 2017 04 31;13(15). Epub 2017 Jan 31.

College of Chemistry, Research Center for Analytical Sciences, State Key Laboratory of Medicinal Chemical Biology, and Tianjin Key Laboratory of Molecular Recognition and Biosensing, Nankai University, Tianjin, 300071, China.

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April 2017

Somatic retrotransposition is infrequent in glioblastomas.

Mob DNA 2016 11;7:22. Epub 2016 Nov 11.

Department of Pathology, Johns Hopkins University School of Medicine, Miller Research Building (MRB) Room 447, 733 North Broadway, Baltimore, MD 21205 USA.

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November 2016

Breast Cancer Prognostics Using Multi-Omics Data.

AMIA Jt Summits Transl Sci Proc 2016 20;2016:52-9. Epub 2016 Jul 20.

Center for Health Informatics and Bioinformatics, New York University Langone Medical Center, New York, NY.

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August 2016

Nicotinic receptor blockade decreases fos immunoreactivity within orexin/hypocretin-expressing neurons of nicotine-exposed rats.

Behav Brain Res 2016 11 1;314:226-33. Epub 2016 Aug 1.

Center for Substance Abuse Research, Lewis Katz School of Medicine at Temple University, Philadelphia, PA19140, United States. Electronic address:

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November 2016

Punica granatum (pomegranate) leaves extract induces apoptosis through mitochondrial intrinsic pathway and inhibits migration and invasion in non-small cell lung cancer in vitro.

Biomed Pharmacother 2016 May 28;80:227-235. Epub 2016 Mar 28.

Department of Nutrition and Food Hygiene, School of Public Health, West China Medical School, Sichuan University, 17# 3rd Section, Ren Min South Road, 610041 Chengdu, China. Electronic address:

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May 2016

Mmu-miR-125b overexpression suppresses NO production in activated macrophages by targeting eEF2K and CCNA2.

BMC Cancer 2016 Mar 28;16:252. Epub 2016 Mar 28.

State Key Laboratory of Medical Molecular Biology, Institute of Basic Medical Sciences, Chinese Academy of Medical Sciences & Peking Union Medical College, Beijing, 100005, China.

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March 2016

An Evaluation of Active Learning Causal Discovery Methods for Reverse-Engineering Local Causal Pathways of Gene Regulation.

Sci Rep 2016 Mar 4;6:22558. Epub 2016 Mar 4.

Center for Health Informatics and Bioinformatics, New York University Medical Center, New York, New York, USA.

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March 2016

Functions of miR-146a and miR-222 in Tumor-associated Macrophages in Breast Cancer.

Sci Rep 2015 Dec 22;5:18648. Epub 2015 Dec 22.

National Laboratory of Medical Molecular Biology, Institute of Basic Medical Sciences, Chinese Academy of Medical Sciences &Peking Union Medical College, Beijing 100005, China.

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December 2015

A double feedback loop mediated by microRNA-23a/27a/24-2 regulates M1 versus M2 macrophage polarization and thus regulates cancer progression.

Oncotarget 2016 Mar;7(12):13502-19

National Laboratory of Medical Molecular Biology, Institute of Basic Medical Sciences, Chinese Academy of Medical Sciences & Peking Union Medical College, Beijing, China.

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March 2016

De-novo learning of genome-scale regulatory networks in S. cerevisiae.

PLoS One 2014 12;9(9):e106479. Epub 2014 Sep 12.

Center for Health Informatics and Bioinformatics, New York University Langone Medical Center, New York, NY, United States of America; Department of Medicine, New York University School of Medicine, New York, NY, United States of America.

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May 2015

Information content and analysis methods for multi-modal high-throughput biomedical data.

Sci Rep 2014 Mar 21;4:4411. Epub 2014 Mar 21.

1] Center for Health Informatics and Bioinformatics, New York University Langone Medical Center, New York, NY, USA [2] Department of Medicine, New York University School of Medicine, New York, NY, USA.

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March 2014

A procedure for implanting organized arrays of microwires for single-unit recordings in awake, behaving animals.

J Vis Exp 2014 Feb 14(84):e51004. Epub 2014 Feb 14.

Department of Psychology, Rutgers, the State University of New Jersey.

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February 2014

Cleavage site stability of Egyptian highly pathogenic avian influenza viruses in backyard chickens during 2009-2011.

J Microbiol Immunol Infect 2015 Feb 21;48(1):28-35. Epub 2014 Feb 21.

Department of Avian and Rabbit Medicine, Faculty of Veterinary Medicine, Zagazig University, Zagazig, Egypt. Electronic address:

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February 2015

Ultrasonic vocalizations: evidence for an affective opponent process during cocaine self-administration.

Psychopharmacology (Berl) 2014 Mar 7;231(5):909-18. Epub 2013 Nov 7.

Department of Psychology, Rutgers University, 152 Frelinghuysen Road, Piscataway, NJ, 08854, USA.

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March 2014

Building an open-source robotic stereotaxic instrument.

J Vis Exp 2013 Oct 29(80):e51006. Epub 2013 Oct 29.

Department of Psychology, Rutgers, The State University of New Jersey.

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October 2013

Amphetamine's dose-dependent effects on dorsolateral striatum sensorimotor neuron firing.

Behav Brain Res 2013 May 8;244:152-61. Epub 2013 Feb 8.

Department of Psychology, Rutgers, The State University of New Jersey, New Brunswick, NJ 08854, USA.

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May 2013

Effects of varying reinforcement probability on pavlovian approach behavior and ultrasonic vocalizations in rats.

Behav Brain Res 2013 Jan 27;237:256-62. Epub 2012 Sep 27.

Department of Psychology, Rutgers University, New Brunswick, NJ 08903, United States.

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January 2013

Slow phasic and tonic activity of ventral pallidal neurons during cocaine self-administration.

Synapse 2012 Feb 3;66(2):106-27. Epub 2011 Nov 3.

Department of Psychology, Rutgers University, New Brunswick, New Jersey 08903, USA.

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February 2012

Evidence for learned skill during cocaine self-administration in rats.

Psychopharmacology (Berl) 2011 Sep 1;217(1):91-100. Epub 2011 Apr 1.

Department of Psychology, Rutgers University, New Brunswick, NJ 08903, USA.

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September 2011

Dose-dependent differences in short ultrasonic vocalizations emitted by rats during cocaine self-administration.

Psychopharmacology (Berl) 2010 Sep 23;211(4):435-42. Epub 2010 Jun 23.

Department of Psychology, Rutgers University, New Brunswick, NJ 08903, USA.

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September 2010

Rapid phasic activity of ventral pallidal neurons during cocaine self-administration.

Synapse 2010 Sep;64(9):704-13

Department of Psychology, Rutgers University, New Brunswick, New Jersey 08903, USA.

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September 2010

Absence of cue-evoked firing in rat dorsolateral striatum neurons.

Behav Brain Res 2010 Jul 6;211(1):23-32. Epub 2010 Mar 6.

Department of Psychology, Rutgers University, 152 Frelinghuysen Road, New Brunswick, NJ 08903, United States.

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July 2010

Evidence for habitual and goal-directed behavior following devaluation of cocaine: a multifaceted interpretation of relapse.

PLoS One 2009 Sep 25;4(9):e7170. Epub 2009 Sep 25.

Department of Psychology, Rutgers University, New Brunswick, New Jersey, United States of America.

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September 2009

Duality of salience in dopamine neurons.

Proc Natl Acad Sci U S A 2009 Aug 23;106(31):E84. Epub 2009 Jul 23.

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August 2009