Simone Scalabrin

Simone Scalabrin

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Simone Scalabrin

Simone Scalabrin

Publications by authors named "Simone Scalabrin"

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Gene duplication and transposition of mobile elements drive evolution of the Rpv3 resistance locus in grapevine.

Plant J 2019 Sep 30. Epub 2019 Sep 30.

Department of Agricultural, Food, Environmental and Animal Sciences, University of Udine, via delle scienze 208, 33100, Udine, Italy.

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http://dx.doi.org/10.1111/tpj.14551DOI Listing
September 2019

LTR retrotransposon dynamics in the evolution of the olive (Olea europaea) genome.

DNA Res 2015 Feb 26;22(1):91-100. Epub 2014 Nov 26.

Department of Agricultural, Food, and Environmental Sciences, University of Pisa, Pisa I-56124, Italy

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http://dx.doi.org/10.1093/dnares/dsu042DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4379980PMC
February 2015

An extensive evaluation of read trimming effects on Illumina NGS data analysis.

PLoS One 2013 23;8(12):e85024. Epub 2013 Dec 23.

Institute of Applied Genomics, Udine, Italy ; Center for Computational Biology and Bioinformatics, Columbia University, New York, New York, United States of America.

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http://journals.plos.org/plosone/article?id=10.1371/journal.pone.0085024PLOS
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3871669PMC
October 2014

GAM-NGS: genomic assemblies merger for next generation sequencing.

BMC Bioinformatics 2013 22;14 Suppl 7:S6. Epub 2013 Apr 22.

Department of Mathematics and Computer Science, University of Udine, 33100 Udine, Italy.

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http://bmcbioinformatics.biomedcentral.com/articles/10.1186/
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http://dx.doi.org/10.1186/1471-2105-14-S7-S6DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3633056PMC
December 2013

Three distinct mutational mechanisms acting on a single gene underpin the origin of yellow flesh in peach.

Plant J 2013 Oct 8;76(2):175-87. Epub 2013 Aug 8.

Dipartimento di Scienze Agrarie e Ambientali, University of Udine, Via delle Scienze 206, 33100, Udine, Italy.

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http://dx.doi.org/10.1111/tpj.12283DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4223380PMC
October 2013

Assemblathon 2: evaluating de novo methods of genome assembly in three vertebrate species.

Gigascience 2013 Jul 22;2(1):10. Epub 2013 Jul 22.

Genome Center, UC, Davis, CA 95616, USA.

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http://dx.doi.org/10.1186/2047-217X-2-10DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3844414PMC
July 2013

A 3,000-loci transcription map of chromosome 3B unravels the structural and functional features of gene islands in hexaploid wheat.

Plant Physiol 2011 Dec 27;157(4):1596-608. Epub 2011 Oct 27.

Institut National de la Recherche Agronomique-Université Blaise Pascal, Unité Mixte de Recherche 1095, Génétique Diversité et Ecophysiologie des Céréales, F-63100 Clermont-Ferrand, France.

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http://www.plantphysiol.org/cgi/doi/10.1104/pp.111.183921
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http://dx.doi.org/10.1104/pp.111.183921DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3327205PMC
December 2011

Automated FingerPrint Background removal: FPB.

BMC Bioinformatics 2009 Apr 30;10:127. Epub 2009 Apr 30.

Istituto di Genomica Applicata (IGA), via J, Linussio 51, I-33100 Udine, Italy.

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http://dx.doi.org/10.1186/1471-2105-10-127DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2689866PMC
April 2009

Wnt-mediated down-regulation of Sp1 target genes by a transcriptional repressor Sp5.

J Biol Chem 2007 Jan 6;282(2):1225-37. Epub 2006 Nov 6.

Institute of Molecular Genetics, Academy of Sciences of the Czech Republic, Videnska 1083, 142 20 Prague 4, Czech Republic.

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http://dx.doi.org/10.1074/jbc.M605851200DOI Listing
January 2007

Mapping and sequencing complex genomes: let's get physical!

Nat Rev Genet 2004 Aug;5(8):578-88

Department of Plant and Soil Sciences and Delaware Biotechnology Institute, University of Delaware, Newark, Delaware 19711, USA.

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http://dx.doi.org/10.1038/nrg1404DOI Listing
August 2004