Simone Picelli

Simone Picelli

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Simone Picelli

Simone Picelli

Publications by authors named "Simone Picelli"

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Full-Length Single-Cell RNA Sequencing with Smart-seq2.

Authors:
Simone Picelli

Methods Mol Biol 2019 ;1979:25-44

German Centre for Neurodegenerative Diseases (DZNE), Bonn, Germany.

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http://dx.doi.org/10.1007/978-1-4939-9240-9_3DOI Listing
August 2019

Tutorial: guidelines for the experimental design of single-cell RNA sequencing studies.

Nat Protoc 2018 12;13(12):2742-2757

CNAG-CRG, Centre for Genomic Regulation (CRG), Barcelona Institute of Science and Technology (BIST), Barcelona, Spain.

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http://www.nature.com/articles/s41596-018-0073-y
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http://dx.doi.org/10.1038/s41596-018-0073-yDOI Listing
December 2018

Two novel colorectal cancer risk loci in the region on chromosome 9q22.32.

Oncotarget 2018 Feb 29;9(13):11170-11179. Epub 2018 Jan 29.

Department of Molecular Medicine and Surgery, Karolinska Institute, Stockholm SE-17176, Sweden.

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http://dx.doi.org/10.18632/oncotarget.24340DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5834248PMC
February 2018

- a novel candidate breast cancer susceptibility locus on 6q14.1.

Authors:
Xiang Jiao Christos Aravidis Rajeshwari Marikkannu Johanna Rantala Simone Picelli Tatjana Adamovic Tao Liu Paula Maguire Barbara Kremeyer Liping Luo Susanna von Holst Vinaykumar Kontham Jessada Thutkawkorapin Sara Margolin Quan Du Johanna Lundin Kyriaki Michailidou Manjeet K Bolla Qin Wang Joe Dennis Michael Lush Christine B Ambrosone Irene L Andrulis Hoda Anton-Culver Natalia N Antonenkova Volker Arndt Matthias W Beckmann Carl Blomqvist William Blot Bram Boeckx Stig E Bojesen Bernardo Bonanni Judith S Brand Hiltrud Brauch Hermann Brenner Annegien Broeks Thomas Brüning Barbara Burwinkel Qiuyin Cai Jenny Chang-Claude Fergus J Couch Angela Cox Simon S Cross Sandra L Deming-Halverson Peter Devilee Isabel Dos-Santos-Silva Thilo Dörk Mikael Eriksson Peter A Fasching Jonine Figueroa Dieter Flesch-Janys Henrik Flyger Marike Gabrielson Montserrat García-Closas Graham G Giles Anna González-Neira Pascal Guénel Qi Guo Melanie Gündert Christopher A Haiman Emily Hallberg Ute Hamann Patricia Harrington Maartje J Hooning John L Hopper Guanmengqian Huang Anna Jakubowska Michael E Jones Michael J Kerin Veli-Matti Kosma Vessela N Kristensen Diether Lambrechts Loic Le Marchand Jan Lubinski Arto Mannermaa John W M Martens Alfons Meindl Roger L Milne Anna Marie Mulligan Susan L Neuhausen Heli Nevanlinna Julian Peto Katri Pylkäs Paolo Radice Valerie Rhenius Elinor J Sawyer Marjanka K Schmidt Rita K Schmutzler Caroline Seynaeve Mitul Shah Jacques Simard Melissa C Southey Anthony J Swerdlow Thérèse Truong Camilla Wendt Robert Winqvist Wei Zheng Javier Benitez Alison M Dunning Paul D P Pharoah Douglas F Easton Kamila Czene Per Hall Annika Lindblom

Oncotarget 2017 Nov 12;8(61):102769-102782. Epub 2017 Oct 12.

Department of Molecular Medicine and Surgery, Karolinska Institutet, Stockholm, Sweden.

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http://dx.doi.org/10.18632/oncotarget.21800DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5732689PMC
November 2017

Single-cell RNA-sequencing: The future of genome biology is now.

Authors:
Simone Picelli

RNA Biol 2017 05 21;14(5):637-650. Epub 2016 Jul 21.

a Eukaryotic Single Cell Genomics Facility , Science for Life Laboratory , Tomtebodavägen , Solna , Sweden.

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http://dx.doi.org/10.1080/15476286.2016.1201618DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5449089PMC
May 2017

Defining New Colorectal Cancer Syndromes in a Population-based Cohort of the Disease.

Anticancer Res 2017 04;37(4):1831-1835

Karolinska Institutet, Department of Medicine Solna, Karolinska University Hospital, Stockholm, Sweden

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http://dx.doi.org/10.21873/anticanres.11518DOI Listing
April 2017

Single-Cell Transcriptome Profiling of Human Pancreatic Islets in Health and Type 2 Diabetes.

Cell Metab 2016 10 22;24(4):593-607. Epub 2016 Sep 22.

Department of Cell and Molecular Biology (CMB), Karolinska Institutet, 171 77 Stockholm, Sweden; Integrated Cardio Metabolic Center (ICMC), Karolinska Institutet, 141 57 Huddinge, Sweden; Ludwig Institute for Cancer Research, 171 77 Stockholm, Sweden. Electronic address:

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http://dx.doi.org/10.1016/j.cmet.2016.08.020DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5069352PMC
October 2016

The heterogeneity of human CD127(+) innate lymphoid cells revealed by single-cell RNA sequencing.

Nat Immunol 2016 Apr 15;17(4):451-60. Epub 2016 Feb 15.

Center for Infectious Medicine, Department of Medicine Huddinge, Karolinska Institutet, Sweden.

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http://dx.doi.org/10.1038/ni.3368DOI Listing
April 2016

Exome sequencing in one family with gastric- and rectal cancer.

BMC Genet 2016 Feb 13;17:41. Epub 2016 Feb 13.

Karolinska Institutet, Department of Molecular Medicine and Surgery, Stockholm, Sweden.

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http://dx.doi.org/10.1186/s12863-016-0351-zDOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4752738PMC
February 2016

Whole-genome Linkage Analysis and Sequence Analysis of Candidate Loci in Familial Breast Cancer.

Anticancer Res 2015 Jun;35(6):3155-65

Center for Molecular Medicine and Surgery, Karolinska University Hospital, Stockholm, Sweden

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June 2015

Tn5 transposase and tagmentation procedures for massively scaled sequencing projects.

Genome Res 2014 Dec 30;24(12):2033-40. Epub 2014 Jul 30.

Ludwig Institute for Cancer Research, 171 77 Stockholm, Sweden; Department of Cell and Molecular Biology, Karolinska Institutet, 171 77 Stockholm, Sweden

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http://dx.doi.org/10.1101/gr.177881.114DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4248319PMC
December 2014

Full-length RNA-seq from single cells using Smart-seq2.

Nat Protoc 2014 Jan 2;9(1):171-81. Epub 2014 Jan 2.

1] Ludwig Institute for Cancer Research, Stockholm, Sweden. [2] Department of Cell and Molecular Biology, Karolinska Institutet, Stockholm, Sweden.

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http://www.nature.com/articles/nprot.2014.006
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http://dx.doi.org/10.1038/nprot.2014.006DOI Listing
January 2014

Smart-seq2 for sensitive full-length transcriptome profiling in single cells.

Nat Methods 2013 Nov 22;10(11):1096-8. Epub 2013 Sep 22.

Ludwig Institute for Cancer Research, Stockholm, Sweden.

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http://www.nature.com/articles/nmeth.2639
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http://dx.doi.org/10.1038/nmeth.2639DOI Listing
November 2013

Mutation screening of the SMARCA3 gene in Swedish colorectal cancer patients.

Mol Med Rep 2008 Mar-Apr;1(2):263-8

Department of Molecular Medicine and Surgery, Karolinska Institute, Stockholm, Sweden.

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October 2012

The continuing search for predisposing colorectal cancer variants.

Cancer Genomics Proteomics 2009 Nov-Dec;6(6):305-16

Department of Molecular Medicine and Surgery L8:02, Karolinska Institute, Stockholm, Sweden.

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January 2010

Complex aetiology of an apparently Mendelian form of mental retardation.

BMC Med Genet 2008 Feb 6;9. Epub 2008 Feb 6.

Department of Clinical Genetics, Rudbeck Laboratory, Uppsala University Hospital, Uppsala, Sweden.

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http://dx.doi.org/10.1186/1471-2350-9-6DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2259315PMC
February 2008