Simon Prochnik

Simon Prochnik

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Simon Prochnik

Simon Prochnik

Publications by authors named "Simon Prochnik"

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Identification and distribution of the NBS-LRR gene family in the Cassava genome.

BMC Genomics 2015 May 7;16:360. Epub 2015 May 7.

Department of Plant Breeding and Genetics, Cornell University, Ithaca, NY, 14853, USA.

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http://dx.doi.org/10.1186/s12864-015-1554-9DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4422547PMC
May 2015

MAJOR DEVELOPMENTAL REGULATORS AND THEIR EXPRESSION IN TWO CLOSELY RELATED SPECIES OF PORPHYRA (RHODOPHYTA)(1).

J Phycol 2012 Aug 12;48(4):883-96. Epub 2012 Apr 12.

Department of Biology, East Carolina University, Greenville, NC 27848, USADelaware Biotechnology Institute, Delaware Technology Park, Newark DE 19711, USADOE Joint Genomics Institute, Walnut Creek, CA 94598, USADepartment of Ecology, Evolution and Natural Resources, Rutgers University, New Brunswick, NJ 08901, USADepartment of Ecology and Evolutionary Biology, University of Connecticut, Stamford, CT, 06901, USADepartment of Marine Sciences, University of Connecticut, Groton, CT 06340, USASchool of Marine Science, University of Maine, Orono, ME 04469 USA.

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http://dx.doi.org/10.1111/j.1529-8817.2012.01138.xDOI Listing
August 2012

The GreenCut2 resource, a phylogenomically derived inventory of proteins specific to the plant lineage.

J Biol Chem 2011 Jun 22;286(24):21427-39. Epub 2011 Apr 22.

Department of Chemistry and Biochemistry, UCLA, Los Angeles, California 90095, USA.

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http://www.jbc.org/lookup/doi/10.1074/jbc.M111.233734
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http://dx.doi.org/10.1074/jbc.M111.233734DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3122202PMC
June 2011

The dynamic genome of Hydra.

Nature 2010 Mar 14;464(7288):592-6. Epub 2010 Mar 14.

US Department of Energy Joint Genome Institute, Walnut Creek, California 94598, USA.

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http://dx.doi.org/10.1038/nature08830DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4479502PMC
March 2010

The Chlamydomonas genome reveals the evolution of key animal and plant functions.

Authors:
Sabeeha S Merchant Simon E Prochnik Olivier Vallon Elizabeth H Harris Steven J Karpowicz George B Witman Astrid Terry Asaf Salamov Lillian K Fritz-Laylin Laurence Maréchal-Drouard Wallace F Marshall Liang-Hu Qu David R Nelson Anton A Sanderfoot Martin H Spalding Vladimir V Kapitonov Qinghu Ren Patrick Ferris Erika Lindquist Harris Shapiro Susan M Lucas Jane Grimwood Jeremy Schmutz Pierre Cardol Heriberto Cerutti Guillaume Chanfreau Chun-Long Chen Valérie Cognat Martin T Croft Rachel Dent Susan Dutcher Emilio Fernández Hideya Fukuzawa David González-Ballester Diego González-Halphen Armin Hallmann Marc Hanikenne Michael Hippler William Inwood Kamel Jabbari Ming Kalanon Richard Kuras Paul A Lefebvre Stéphane D Lemaire Alexey V Lobanov Martin Lohr Andrea Manuell Iris Meier Laurens Mets Maria Mittag Telsa Mittelmeier James V Moroney Jeffrey Moseley Carolyn Napoli Aurora M Nedelcu Krishna Niyogi Sergey V Novoselov Ian T Paulsen Greg Pazour Saul Purton Jean-Philippe Ral Diego Mauricio Riaño-Pachón Wayne Riekhof Linda Rymarquis Michael Schroda David Stern James Umen Robert Willows Nedra Wilson Sara Lana Zimmer Jens Allmer Janneke Balk Katerina Bisova Chong-Jian Chen Marek Elias Karla Gendler Charles Hauser Mary Rose Lamb Heidi Ledford Joanne C Long Jun Minagawa M Dudley Page Junmin Pan Wirulda Pootakham Sanja Roje Annkatrin Rose Eric Stahlberg Aimee M Terauchi Pinfen Yang Steven Ball Chris Bowler Carol L Dieckmann Vadim N Gladyshev Pamela Green Richard Jorgensen Stephen Mayfield Bernd Mueller-Roeber Sathish Rajamani Richard T Sayre Peter Brokstein Inna Dubchak David Goodstein Leila Hornick Y Wayne Huang Jinal Jhaveri Yigong Luo Diego Martínez Wing Chi Abby Ngau Bobby Otillar Alexander Poliakov Aaron Porter Lukasz Szajkowski Gregory Werner Kemin Zhou Igor V Grigoriev Daniel S Rokhsar Arthur R Grossman

Science 2007 Oct;318(5848):245-50

Department of Chemistry and Biochemistry, University of California at Los Angeles, Los Angeles, CA 90095, USA.

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http://dx.doi.org/10.1126/science.1143609DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2875087PMC
October 2007

Novel sfi1 alleles uncover additional functions for Sfi1p in bipolar spindle assembly and function.

Mol Biol Cell 2007 Jun 28;18(6):2047-56. Epub 2007 Mar 28.

Wellcome Trust Centre for Cell Biology, University of Edinburgh, Edinburgh EH9 3JR, United Kingdom.

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http://dx.doi.org/10.1091/mbc.e06-10-0918DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC1877113PMC
June 2007

Novel metabolism in Chlamydomonas through the lens of genomics.

Curr Opin Plant Biol 2007 Apr 8;10(2):190-8. Epub 2007 Feb 8.

Department of Plant Biology, The Carnegie Institution, 260 Panama Street, Stanford, California 94305, USA.

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http://dx.doi.org/10.1016/j.pbi.2007.01.012DOI Listing
April 2007

Evidence for a microRNA expansion in the bilaterian ancestor.

Dev Genes Evol 2007 Jan 14;217(1):73-7. Epub 2006 Nov 14.

DOE Joint Genome Institute, 2800 Mitchell Avenue, Walnut Creek, CA 94598, USA.

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http://link.springer.com/content/pdf/10.1007/s00427-006-0116
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http://link.springer.com/10.1007/s00427-006-0116-1
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http://dx.doi.org/10.1007/s00427-006-0116-1DOI Listing
January 2007

Large-scale trends in the evolution of gene structures within 11 animal genomes.

PLoS Comput Biol 2006 Mar 3;2(3):e15. Epub 2006 Mar 3.

Department of Molecular and Cell Biology, University of California Berkeley, Berkeley, California, USA.

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http://dx.doi.org/10.1371/journal.pcbi.0020015DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC1386723PMC
March 2006