Simon Jupp

Simon Jupp

UNVERIFIED PROFILE

Are you Simon Jupp?   Register this Author

Register author
Simon Jupp

Simon Jupp

Publications by authors named "Simon Jupp"

Are you Simon Jupp?   Register this Author

26Publications

738Reads

37Profile Views

Harmonising phenomics information for a better interoperability in the rare disease field.

Eur J Med Genet 2018 Nov 7;61(11):706-714. Epub 2018 Feb 7.

INSERM, US14 - Orphanet, Plateforme Maladies Rares, 75014 Paris, France. Electronic address:

View Article

Download full-text PDF

Source
http://dx.doi.org/10.1016/j.ejmg.2018.01.013DOI Listing
November 2018

Comparison, alignment, and synchronization of cell line information between CLO and EFO.

BMC Bioinformatics 2017 12 21;18(Suppl 17):557. Epub 2017 Dec 21.

Center of Computational Medicine and Bioinformatics, University of Michigan, Ann Arbor, MI, USA.

View Article

Download full-text PDF

Source
http://dx.doi.org/10.1186/s12859-017-1979-zDOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5763470PMC
December 2017

The cellular microscopy phenotype ontology.

J Biomed Semantics 2016 18;7:28. Epub 2016 May 18.

European Bioinformatics Institute (EMBL-EBI), European Molecular Biology Laboratory, Wellcome Trust Genome Campus, Hinxton Cambridge, CB10 1SD UK.

View Article

Download full-text PDF

Source
http://dx.doi.org/10.1186/s13326-016-0074-0DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4870745PMC
November 2017

OLS Client and OLS Dialog: Open Source Tools to Annotate Public Omics Datasets.

Proteomics 2017 Oct;17(19)

European Molecular Biology Laboratory, European Bioinformatics Institute (EMBL-EBI), Wellcome Trust Genome Campus, Hinxton, Cambridge, UK.

View Article

Download full-text PDF

Source
http://dx.doi.org/10.1002/pmic.201700244DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5707441PMC
October 2017

Linking rare and common disease: mapping clinical disease-phenotypes to ontologies in therapeutic target validation.

J Biomed Semantics 2016 23;7. Epub 2016 Mar 23.

European Bioinformatics Institute (EMBL-EBI), European Molecular Biology Laboratory, Wellcome Trust Genome Campus, Hinxton, Cambridge, CB10 1SD UK ; Centre for Therapeutic Target Validation, Wellcome Trust Genome Campus, Hinxton, Cambridge, CB10 1SD UK.

View Article

Download full-text PDF

Source
http://dx.doi.org/10.1186/s13326-016-0051-7DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4804633PMC
October 2016

Webulous and the Webulous Google Add-On--a web service and application for ontology building from templates.

J Biomed Semantics 2016 1;7:17. Epub 2016 Apr 1.

European Bioinformatics Institute (EMBL-EBI),European Molecular Biology Laboratory, Wellcome Trust Genome Campus, Hinxton, Cambridge, UK.

View Article

Download full-text PDF

Source
http://dx.doi.org/10.1186/s13326-016-0055-3DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4818523PMC
October 2016

Developing a web-based SKOS editor.

J Biomed Semantics 2016 4;7. Epub 2016 Apr 4.

European Bioinformatics Institute, Hinxton, CB10 1SD Cambridgeshire United Kingdom.

View Article

Download full-text PDF

Source
http://dx.doi.org/10.1186/s13326-015-0043-zDOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4819276PMC
October 2016

Ten Simple Rules for Selecting a Bio-ontology.

PLoS Comput Biol 2016 Feb 11;12(2):e1004743. Epub 2016 Feb 11.

European Bioinformatics Institute (EMBL-EBI), Cambridge, United Kingdom.

View Article

Download full-text PDF

Source
http://dx.doi.org/10.1371/journal.pcbi.1004743DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4750991PMC
February 2016

The EBI RDF platform: linked open data for the life sciences.

Bioinformatics 2014 May 11;30(9):1338-9. Epub 2014 Jan 11.

European Molecular Biology Laboratory, European Bioinformatics Institute (EMBL-EBI), Wellcome Trust Genome Campus, Hinxton, Cambridge CB10 1SD, UK and SIB Swiss Institute of Bioinformatics, Centre Medical Universitaire, 1211 Geneve, Switzerland.

View Article

Download full-text PDF

Source
http://dx.doi.org/10.1093/bioinformatics/btt765DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3998127PMC
May 2014

The KUPNetViz: a biological network viewer for multiple -omics datasets in kidney diseases.

BMC Bioinformatics 2013 Jul 24;14:235. Epub 2013 Jul 24.

Institut National de la Santé et de la Recherche Médicale (INSERM), U1048, Institute of Cardiovascular and Metabolic Disease, 1 avenue Jean Poulhès, 31432 Toulouse, France.

View Article

Download full-text PDF

Source
http://dx.doi.org/10.1186/1471-2105-14-235DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3725151PMC
July 2013

Using semantic web technologies to manage complexity and change in biomedical data.

Conf Proc IEEE Eng Med Biol Soc 2011 ;2011:3708-11

School of Computer Science, University of Manchester, Oxford Road, Manchester, United Kingdom.

View Article

Download full-text PDF

Source
http://dx.doi.org/10.1109/IEMBS.2011.6090629DOI Listing
July 2012

The KUPKB: a novel Web application to access multiomics data on kidney disease.

FASEB J 2012 May 17;26(5):2145-53. Epub 2012 Feb 17.

INSERM U1048, Institut of Cardiovascular and Metabolic Disease, 1 Avenue Jean Poulhes, Toulouse Cedex 4, 31432, France.

View Article

Download full-text PDF

Source
http://dx.doi.org/10.1096/fj.11-194381DOI Listing
May 2012

Logical Gene Ontology Annotations (GOAL): exploring gene ontology annotations with OWL.

J Biomed Semantics 2012 Apr 24;3 Suppl 1:S3. Epub 2012 Apr 24.

European Bioinformatics Institute, Wellcome Trust Genome Campus, Cambridge, CB10 1SD, UK.

View Article

Download full-text PDF

Source
http://dx.doi.org/10.1186/2041-1480-3-S1-S3DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3337258PMC
April 2012

Developing a kidney and urinary pathway knowledge base.

J Biomed Semantics 2011 May 17;2 Suppl 2:S7. Epub 2011 May 17.

School of Computer Science, University of Manchester, UK.

View Article

Download full-text PDF

Source
http://dx.doi.org/10.1186/2041-1480-2-S2-S7DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3102896PMC
May 2011

Issues in learning an ontology from text.

BMC Bioinformatics 2009 May 6;10 Suppl 5:S1. Epub 2009 May 6.

Aston Business School, Aston University, Aston Triangle, Birmingham, B4 7ET, UK.

View Article

Download full-text PDF

Source
http://dx.doi.org/10.1186/1471-2105-10-S5-S1DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2679401PMC
May 2009