Publications by authors named "Siewert J Marrink"

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The N-terminal amphipathic helix of Pex11p self-interacts to induce membrane remodelling during peroxisome fission.
Biochim Biophys Acta 2018 Jun 1;1860(6):1292-1300. Epub 2018 Mar 1.
Molecular Dynamics, Groningen Biomolecular Sciences and Biotechnology Institute, University of Groningen, Nijenborgh 7, 9747AG Groningen, The Netherlands; Instituto de Tecnologia Química e Biológica António Xavier, Universidade Nova de Lisboa, Av. da República, 2780-157 Oeiras, Portugal. Electronic address:

Enhancing Molecular n-Type Doping of Donor-Acceptor Copolymers by Tailoring Side Chains.
Adv Mater 2018 Feb 11;30(7). Epub 2018 Jan 11.
Zernike Institute for Advanced Materials, University of Groningen, Nijenborgh 4, Groningen, NL-9747, AG, The Netherlands.

Ironing out their differences: dissecting the structural determinants of a phenylalanine aminomutase and ammonia lyase.
ACS Chem Biol 2015 Apr 20;10(4):989-97. Epub 2015 Jan 20.
†Department of Biochemistry, Groningen Biomolecular Sciences and Biotechnology Institute, University of Groningen, Nijenborgh 4, 9747 AG, Groningen, The Netherlands.

Dry Martini, a coarse-grained force field for lipid membrane simulations with implicit solvent.
J Chem Theory Comput 2015 Jan 17;11(1):260-75. Epub 2014 Dec 17.
Groningen Biomolecular Sciences and Biotechnology Institute and Zernike Institute for Advanced Materials, University of Groningen , Nijenborgh 7, 9747 AG Groningen, The Netherlands.

Global structural changes of an ion channel during its gating are followed by ion mobility mass spectrometry.
Proc Natl Acad Sci U S A 2014 Dec 17;111(48):17170-5. Epub 2014 Nov 17.
Department of Neuroscience, University of Groningen, University Medical Center Groningen, 9713 AV, Groningen, The Netherlands

The activation mode of the mechanosensitive ion channel, MscL, by lysophosphatidylcholine differs from tension-induced gating.
FASEB J 2014 Oct 23;28(10):4292-302. Epub 2014 Jun 23.
Groningen Biomolecular Sciences and Biotechnology Institute, Groningen, The Netherlands; Neuroscience Department, University Medical Centre Groningen, Groningen, The Netherlands

Lipid organization of the plasma membrane.
J Am Chem Soc 2014 Oct 1;136(41):14554-9. Epub 2014 Oct 1.
Groningen Biomolecular Sciences and Biotechnology Institute and Zernike Institute for Advanced Materials, University of Groningen , Nijenborgh 7, 9747 AG Groningen, The Netherlands.

Phytochemicals perturb membranes and promiscuously alter protein function.
ACS Chem Biol 2014 Aug 17;9(8):1788-98. Epub 2014 Jun 17.
Zernike Institute for Advanced Materials, ‡Groningen Biomolecular Science and Biotechnology Institute, University of Groningen , Groningen, The Netherlands.

Establishing conditions for simulating hydrophobic solutes in electric fields by molecular dynamics: effects of the long-range van der Waals treatment on the apparent particle mobility.
J Mol Model 2014 Aug 8;20(8):2359. Epub 2014 Aug 8.
Cluster of Excellence: Engineering of Advanced Materials, Friedrich-Alexander University Erlangen-Nuremberg, Nägelsbachstraße 49b, 91052, Erlangen, Germany.

Improved Parameters for the Martini Coarse-Grained Protein Force Field.
J Chem Theory Comput 2013 Jan 28;9(1):687-97. Epub 2012 Nov 28.
Groningen Biomolecular Sciences and Biotechnology Institute and Zernike Institute for Advanced Materials, University of Groningen, Nijenborgh 7, 9747 AG Groningen, The Netherlands.


Structural basis for the enhanced activity of cyclic antimicrobial peptides: the case of BPC194.
Biochim Biophys Acta 2011 Sep 8;1808(9):2197-205. Epub 2011 May 8.
Department of Biochemistry and Biophysical Chemistry, Groningen Biomolecular Sciences and Biotechnology Institute, University of Groningen, Nijenborgh 4, 9747 AG Groningen, Netherlands.

Influence of hydrophobic mismatch and amino acid composition on the lateral diffusion of transmembrane peptides.
Biophys J 2010 Sep;99(5):1447-54
Department of Biochemistry, Groningen Biomolecular Sciences and Biotechnology Institute, Netherlands Proteomics Centre, and Zernike Institute for Advanced Materials, University of Groningen, Groningen, The Netherlands.

Martini Coarse-Grained Force Field: Extension to Carbohydrates.
J Chem Theory Comput 2009 Dec 30;5(12):3195-210. Epub 2009 Oct 30.
Groningen Biomolecular Sciences and Biotechnology Institute & Zernike Institute for Advanced Materials, University of Groningen, Nijenborgh 4, 9747 AG Groningen, The Netherlands, Groningen Biomolecular Sciences and Biotechnology Institute (GBB), Centre for Carbohydrate Bioprocessing, University of Groningen, Kerklaan 30, 9751 NN Haren, The Netherlands, and Laboratorium für Physikalische Chemie, ETH Zürich, CH-8093 Zürich, Switzerland.


Intramolecular photostabilization via triplet-state quenching: design principles to make organic fluorophores "self-healing".
Faraday Discuss 2015 9;184:221-35. Epub 2015 Oct 9.
Molecular Microscopy Research Group & Single-molecule Biophysics, Zernike Institute for Advanced Materials, University of Groningen, Nijenborgh 4, 9747 AG Groningen, The Netherlands.


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