Publications by authors named "Siew-Loon Ooi"

12Publications

Integrative analysis of the Caenorhabditis elegans genome by the modENCODE project.

Authors:
Mark B Gerstein Zhi John Lu Eric L Van Nostrand Chao Cheng Bradley I Arshinoff Tao Liu Kevin Y Yip Rebecca Robilotto Andreas Rechtsteiner Kohta Ikegami Pedro Alves Aurelien Chateigner Marc Perry Mitzi Morris Raymond K Auerbach Xin Feng Jing Leng Anne Vielle Wei Niu Kahn Rhrissorrakrai Ashish Agarwal Roger P Alexander Galt Barber Cathleen M Brdlik Jennifer Brennan Jeremy Jean Brouillet Adrian Carr Ming-Sin Cheung Hiram Clawson Sergio Contrino Luke O Dannenberg Abby F Dernburg Arshad Desai Lindsay Dick Andréa C Dosé Jiang Du Thea Egelhofer Sevinc Ercan Ghia Euskirchen Brent Ewing Elise A Feingold Reto Gassmann Peter J Good Phil Green Francois Gullier Michelle Gutwein Mark S Guyer Lukas Habegger Ting Han Jorja G Henikoff Stefan R Henz Angie Hinrichs Heather Holster Tony Hyman A Leo Iniguez Judith Janette Morten Jensen Masaomi Kato W James Kent Ellen Kephart Vishal Khivansara Ekta Khurana John K Kim Paulina Kolasinska-Zwierz Eric C Lai Isabel Latorre Amber Leahey Suzanna Lewis Paul Lloyd Lucas Lochovsky Rebecca F Lowdon Yaniv Lubling Rachel Lyne Michael MacCoss Sebastian D Mackowiak Marco Mangone Sheldon McKay Desirea Mecenas Gennifer Merrihew David M Miller Andrew Muroyama John I Murray Siew-Loon Ooi Hoang Pham Taryn Phippen Elicia A Preston Nikolaus Rajewsky Gunnar Rätsch Heidi Rosenbaum Joel Rozowsky Kim Rutherford Peter Ruzanov Mihail Sarov Rajkumar Sasidharan Andrea Sboner Paul Scheid Eran Segal Hyunjin Shin Chong Shou Frank J Slack Cindie Slightam Richard Smith William C Spencer E O Stinson Scott Taing Teruaki Takasaki Dionne Vafeados Ksenia Voronina Guilin Wang Nicole L Washington Christina M Whittle Beijing Wu Koon-Kiu Yan Georg Zeller Zheng Zha Mei Zhong Xingliang Zhou Julie Ahringer Susan Strome Kristin C Gunsalus Gos Micklem X Shirley Liu Valerie Reinke Stuart K Kim LaDeana W Hillier Steven Henikoff Fabio Piano Michael Snyder Lincoln Stein Jason D Lieb Robert H Waterston

Science 2010 Dec 22;330(6012):1775-87. Epub 2010 Dec 22.

Program in Computational Biology and Bioinformatics, Yale University, Bass 432, 266 Whitney Avenue, New Haven, CT 06520, USA.

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December 2010

Disparities in breast cancer characteristics and outcomes by race/ethnicity.

Breast Cancer Res Treat 2011 Jun 7;127(3):729-38. Epub 2010 Oct 7.

Division of Public Health Sciences, Fred Hutchinson Cancer Research Center, 1100 Fairview Avenue North, M4-C308, Seattle, WA 98109-1024, USA.

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June 2011

A native chromatin purification system for epigenomic profiling in Caenorhabditis elegans.

Nucleic Acids Res 2010 Mar 4;38(4):e26. Epub 2009 Dec 4.

Division of Basic Sciences, Fred Hutchinson Cancer Research Center, Seattle, WA, USA.

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March 2010

Germline histone dynamics and epigenetics.

Curr Opin Cell Biol 2007 Jun 27;19(3):257-65. Epub 2007 Apr 27.

Division of Basic Sciences, Fred Hutchinson Cancer Research Center, Seattle, WA 98109, USA.

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June 2007

dSLAM analysis of genome-wide genetic interactions in Saccharomyces cerevisiae.

Methods 2007 Feb;41(2):206-21

Department of Molecular Biology and Genetics, The Johns Hopkins University School of Medicine, 733 North Broadway, Baltimore, MD 21205, USA.

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February 2007

Histone H3.3 variant dynamics in the germline of Caenorhabditis elegans.

PLoS Genet 2006 Jun;2(6):e97

Division of Basic Sciences, Fred Hutchinson Cancer Research Center, Seattle, Washington, USA.

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June 2006

Automated cell lineage tracing in Caenorhabditis elegans.

Proc Natl Acad Sci U S A 2006 Feb 13;103(8):2707-12. Epub 2006 Feb 13.

Department of Genome Sciences, University of Washington, WA 98195, USA.

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February 2006

Global synthetic-lethality analysis and yeast functional profiling.

Trends Genet 2006 Jan 23;22(1):56-63. Epub 2005 Nov 23.

High Throughput Biology Center, Institute of Genetic Medicine, Department of Biostatistics, Johns Hopkins University School of Medicine, 339 Broadway Research Building, 733 North Broadway, Baltimore, MD 21205, USA.

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January 2006

Improved microarray methods for profiling the Yeast Knockout strain collection.

Nucleic Acids Res 2005 Jul 1;33(12):e103. Epub 2005 Jul 1.

Department of Molecular Biology and Genetics, Johns Hopkins University School of Medicine, Baltimore, MD 21205, USA.

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July 2005

DNA helicase gene interaction network defined using synthetic lethality analyzed by microarray.

Nat Genet 2003 Nov 19;35(3):277-86. Epub 2003 Oct 19.

Department of Molecular Biology & Genetics, The Johns Hopkins University School of Medicine, 617 Hunterian Building, 725 North Wolfe Street, Baltimore, Maryland 21205, USA.

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November 2003