Shunsuke Yaguchi

Shunsuke Yaguchi

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Shunsuke Yaguchi

Shunsuke Yaguchi

Publications by authors named "Shunsuke Yaguchi"

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Whole mount in situ hybridization techniques for analysis of the spatial distribution of mRNAs in sea urchin embryos and early larvae.

Methods Cell Biol 2019 20;151:177-196. Epub 2019 Mar 20.

Department of Biological Sciences, Auburn University, Auburn, AL, United States. Electronic address:

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http://dx.doi.org/10.1016/bs.mcb.2019.01.003DOI Listing
July 2019

Analysis of neural activity with fluorescent protein biosensors.

Methods Cell Biol 2019 3;151:519-526. Epub 2018 Dec 3.

Shimoda Marine Research Center, University of Tsukuba, Shimoda, Shizuoka, Japan.

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http://dx.doi.org/10.1016/bs.mcb.2018.10.010DOI Listing
July 2019

Temnopleurus as an emerging echinoderm model.

Authors:
Shunsuke Yaguchi

Methods Cell Biol 2019 14;150:71-79. Epub 2018 Nov 14.

Shimoda Marine Research Center, University of Tsukuba, Shizuoka, Japan. Electronic address:

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http://dx.doi.org/10.1016/bs.mcb.2018.09.001DOI Listing
June 2019

cis-Regulatory analysis for later phase of anterior neuroectoderm-specific foxQ2 expression in sea urchin embryos.

Genesis 2019 06 26;57(6):e23302. Epub 2019 Apr 26.

Shimoda Marine Research Center, University of Tsukuba, Shimoda, Shizuoka, Japan.

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http://dx.doi.org/10.1002/dvg.23302DOI Listing
June 2019

Evolution of nitric oxide regulation of gut function.

Proc Natl Acad Sci U S A 2019 03 4;116(12):5607-5612. Epub 2019 Mar 4.

Shimoda Marine Research Center, University of Tsukuba, 5-10-1 Shimoda, Shizuoka 415-0025, Japan

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http://dx.doi.org/10.1073/pnas.1816973116DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6431160PMC
March 2019

Meis transcription factor maintains the neurogenic ectoderm and regulates the anterior-posterior patterning in embryos of a sea urchin, Hemicentrotus pulcherrimus.

Dev Biol 2018 12 25;444(1):1-8. Epub 2018 Sep 25.

Shimoda Marine Research Center, University of Tsukuba, 5-10-1, Shimoda, Shizuoka 415-0025, Japan. Electronic address:

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https://linkinghub.elsevier.com/retrieve/pii/S00121606183042
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http://dx.doi.org/10.1016/j.ydbio.2018.09.018DOI Listing
December 2018

Transforming growth factor-β signal regulates gut bending in the sea urchin embryo.

Dev Growth Differ 2018 May;60(4):216-225

Shimoda Marine Research Center, University of Tsukuba, Shimoda, Japan.

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http://dx.doi.org/10.1111/dgd.12434DOI Listing
May 2018

HpBase: A genome database of a sea urchin, Hemicentrotus pulcherrimus.

Dev Growth Differ 2018 Apr 13;60(3):174-182. Epub 2018 Mar 13.

Shimoda Marine Research Center, University of Tsukuba, Shizuoka, Japan.

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http://dx.doi.org/10.1111/dgd.12429DOI Listing
April 2018

Calaxin establishes basal body orientation and coordinates movement of monocilia in sea urchin embryos.

Sci Rep 2017 09 7;7(1):10751. Epub 2017 Sep 7.

Shimoda Marine Research Center, University of Tsukuba, 5-10-1 Shimoda, Shizuoka, 415-0025, Japan.

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http://dx.doi.org/10.1038/s41598-017-10822-zDOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5589754PMC
September 2017

Troponin-I is present as an essential component of muscles in echinoderm larvae.

Sci Rep 2017 03 8;7:43563. Epub 2017 Mar 8.

Faculty of Fisheries Sciences, Hokkaido University, 3-1-1 Minato-cho, Hakodate, Hokkaido 041-8611, Japan.

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http://dx.doi.org/10.1038/srep43563DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5341096PMC
March 2017

Cooperative Wnt-Nodal Signals Regulate the Patterning of Anterior Neuroectoderm.

PLoS Genet 2016 Apr 21;12(4):e1006001. Epub 2016 Apr 21.

Shimoda Marine Research Center, University of Tsukuba, Shizuoka, Japan.

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http://dx.doi.org/10.1371/journal.pgen.1006001DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4839626PMC
April 2016

Early development and neurogenesis of Temnopleurus reevesii.

Dev Growth Differ 2015 Apr 10;57(3):242-50. Epub 2015 Mar 10.

Shimoda Marine Research Center, University of Tsukuba, 5-10-1 Shimoda, Shizuoka, 415-0025, Japan; Japanese Association for Marine Biology (JAMBIO), 5-10-1 Shimoda, Shizuoka, 415-0025, Japan.

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http://dx.doi.org/10.1111/dgd.12202DOI Listing
April 2015

Imaging neural development in embryonic and larval sea urchins.

Methods Mol Biol 2014 ;1128:147-60

Department of Biochemistry and Microbiology, University of Victoria, Victoria, Canada.

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http://dx.doi.org/10.1007/978-1-62703-974-1_9DOI Listing
October 2014

bicaudal-C is required for the formation of anterior neurogenic ectoderm in the sea urchin embryo.

Sci Rep 2014 Oct 31;4:6852. Epub 2014 Oct 31.

1] Shimoda Marine Research Center, University of Tsukuba, 5-10-1 Shimoda, Shizuoka 415-0025, Japan [2] Japanese Association for Marine Biology (JAMBIO).

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http://dx.doi.org/10.1038/srep06852DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4215294PMC
October 2014

Glutathione transferase theta in apical ciliary tuft regulates mechanical reception and swimming behavior of Sea Urchin Embryos.

Cytoskeleton (Hoboken) 2013 Aug 19;70(8):453-70. Epub 2013 Aug 19.

Shimoda Marine Research Center, University of Tsukuba, Shimoda, Shizuoka, 415-0025, Japan.

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http://dx.doi.org/10.1002/cm.21127DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3812683PMC
August 2013

Zinc finger homeobox is required for the differentiation of serotonergic neurons in the sea urchin embryo.

Dev Biol 2012 Mar 22;363(1):74-83. Epub 2011 Dec 22.

Shimoda Marine Research Center, University of Tsukuba, 5-10-1 Shimoda, Shizuoka 415-0025, Japan.

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http://dx.doi.org/10.1016/j.ydbio.2011.12.024DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3288183PMC
March 2012

Fez function is required to maintain the size of the animal plate in the sea urchin embryo.

Development 2011 Oct 18;138(19):4233-43. Epub 2011 Aug 18.

Shimoda Marine Research Center, University of Tsukuba, 5-10-1 Shimoda, Shizuoka 415-0025, Japan.

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http://dx.doi.org/10.1242/dev.069856DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3171223PMC
October 2011

The evolution of nervous system patterning: insights from sea urchin development.

Development 2011 Sep;138(17):3613-23

National Institute for Dental and Craniofacial Research, National Institutes of Health, Bethesda, MD 20892, USA.

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http://dev.biologists.org/cgi/doi/10.1242/dev.058172
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http://dx.doi.org/10.1242/dev.058172DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3152920PMC
September 2011

ankAT-1 is a novel gene mediating the apical tuft formation in the sea urchin embryo.

Dev Biol 2010 Dec 26;348(1):67-75. Epub 2010 Sep 26.

Shimoda Marine Research Center, University of Tsukuba, 5-10-1 Shimoda, Shizuoka, Japan.

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http://dx.doi.org/10.1016/j.ydbio.2010.09.011DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2976814PMC
December 2010

TGFβ signaling positions the ciliary band and patterns neurons in the sea urchin embryo.

Dev Biol 2010 Nov 12;347(1):71-81. Epub 2010 Aug 12.

Shimoda Marine Research Center, University of Tsukuba, Japan.

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http://dx.doi.org/10.1016/j.ydbio.2010.08.009DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2950233PMC
November 2010

Excision and transposition activity of Tc1/mariner superfamily transposons in sea urchin embryos.

Zoolog Sci 2010 Mar;27(3):256-62

Shimoda Marine Research Center, University of Tsukuba, Shimoda, Shizuoka 415-0025, Japan.

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http://dx.doi.org/10.2108/zsj.27.256DOI Listing
March 2010

Spatiotemporal expression pattern of an encephalopsin orthologue of the sea urchin Hemicentrotus pulcherrimus during early development, and its potential role in larval vertical migration.

Dev Growth Differ 2010 Feb 7;52(2):195-207. Epub 2010 Jan 7.

Research Center for Marine Biology, Tohoku University, Asamushi, Aomori, Aomori 039-3501, Japan.

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http://dx.doi.org/10.1111/j.1440-169X.2009.01154.xDOI Listing
February 2010

The sea urchin animal pole domain is a Six3-dependent neurogenic patterning center.

Development 2009 Apr;136(7):1179-89

National Institute for Dental and Craniofacial Research, National Institutes of Health, Bethesda, MD 20892, USA.

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http://dx.doi.org/10.1242/dev.032300DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2685935PMC
April 2009

A Wnt-FoxQ2-nodal pathway links primary and secondary axis specification in sea urchin embryos.

Dev Cell 2008 Jan;14(1):97-107

National Institute of Dental and Craniofacial Research, National Institutes of Health, Bethesda, MD 20892, USA.

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http://linkinghub.elsevier.com/retrieve/pii/S153458070700390
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http://dx.doi.org/10.1016/j.devcel.2007.10.012DOI Listing
January 2008

Sp-Smad2/3 mediates patterning of neurogenic ectoderm by nodal in the sea urchin embryo.

Dev Biol 2007 Feb 10;302(2):494-503. Epub 2006 Oct 10.

Department of Biology, University of Victoria, Victoria, POB 3020, STN CSC, 3800 Finnerty Rd, Victoria, BC, Canada V8W 3N5.

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http://dx.doi.org/10.1016/j.ydbio.2006.10.010DOI Listing
February 2007

Serotonin stimulates [Ca2+]i elevation in ciliary ectodermal cells of echinoplutei through a serotonin receptor cell network in the blastocoel.

J Exp Biol 2007 Feb;210(Pt 3):403-12

Research Center for Marine Biology, Graduate School of Life Sciences, Tohoku University, Asamushi, Aomori, Aomori 039-3501, Japan.

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http://jeb.biologists.org/cgi/doi/10.1242/jeb.02666
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http://dx.doi.org/10.1242/jeb.02666DOI Listing
February 2007

The genome of the sea urchin Strongylocentrotus purpuratus.

Authors:
Erica Sodergren George M Weinstock Eric H Davidson R Andrew Cameron Richard A Gibbs Robert C Angerer Lynne M Angerer Maria Ina Arnone David R Burgess Robert D Burke James A Coffman Michael Dean Maurice R Elphick Charles A Ettensohn Kathy R Foltz Amro Hamdoun Richard O Hynes William H Klein William Marzluff David R McClay Robert L Morris Arcady Mushegian Jonathan P Rast L Courtney Smith Michael C Thorndyke Victor D Vacquier Gary M Wessel Greg Wray Lan Zhang Christine G Elsik Olga Ermolaeva Wratko Hlavina Gretchen Hofmann Paul Kitts Melissa J Landrum Aaron J Mackey Donna Maglott Georgia Panopoulou Albert J Poustka Kim Pruitt Victor Sapojnikov Xingzhi Song Alexandre Souvorov Victor Solovyev Zheng Wei Charles A Whittaker Kim Worley K James Durbin Yufeng Shen Olivier Fedrigo David Garfield Ralph Haygood Alexander Primus Rahul Satija Tonya Severson Manuel L Gonzalez-Garay Andrew R Jackson Aleksandar Milosavljevic Mark Tong Christopher E Killian Brian T Livingston Fred H Wilt Nikki Adams Robert Bellé Seth Carbonneau Rocky Cheung Patrick Cormier Bertrand Cosson Jenifer Croce Antonio Fernandez-Guerra Anne-Marie Genevière Manisha Goel Hemant Kelkar Julia Morales Odile Mulner-Lorillon Anthony J Robertson Jared V Goldstone Bryan Cole David Epel Bert Gold Mark E Hahn Meredith Howard-Ashby Mark Scally John J Stegeman Erin L Allgood Jonah Cool Kyle M Judkins Shawn S McCafferty Ashlan M Musante Robert A Obar Amanda P Rawson Blair J Rossetti Ian R Gibbons Matthew P Hoffman Andrew Leone Sorin Istrail Stefan C Materna Manoj P Samanta Viktor Stolc Waraporn Tongprasit Qiang Tu Karl-Frederik Bergeron Bruce P Brandhorst James Whittle Kevin Berney David J Bottjer Cristina Calestani Kevin Peterson Elly Chow Qiu Autumn Yuan Eran Elhaik Dan Graur Justin T Reese Ian Bosdet Shin Heesun Marco A Marra Jacqueline Schein Michele K Anderson Virginia Brockton Katherine M Buckley Avis H Cohen Sebastian D Fugmann Taku Hibino Mariano Loza-Coll Audrey J Majeske Cynthia Messier Sham V Nair Zeev Pancer David P Terwilliger Cavit Agca Enrique Arboleda Nansheng Chen Allison M Churcher F Hallböök Glen W Humphrey Mohammed M Idris Takae Kiyama Shuguang Liang Dan Mellott Xiuqian Mu Greg Murray Robert P Olinski Florian Raible Matthew Rowe John S Taylor Kristin Tessmar-Raible D Wang Karen H Wilson Shunsuke Yaguchi Terry Gaasterland Blanca E Galindo Herath J Gunaratne Celina Juliano Masashi Kinukawa Gary W Moy Anna T Neill Mamoru Nomura Michael Raisch Anna Reade Michelle M Roux Jia L Song Yi-Hsien Su Ian K Townley Ekaterina Voronina Julian L Wong Gabriele Amore Margherita Branno Euan R Brown Vincenzo Cavalieri Véronique Duboc Louise Duloquin Constantin Flytzanis Christian Gache François Lapraz Thierry Lepage Annamaria Locascio Pedro Martinez Giorgio Matassi Valeria Matranga Ryan Range Francesca Rizzo Eric Röttinger Wendy Beane Cynthia Bradham Christine Byrum Tom Glenn Sofia Hussain Gerard Manning Esther Miranda Rebecca Thomason Katherine Walton Athula Wikramanayke Shu-Yu Wu Ronghui Xu C Titus Brown Lili Chen Rachel F Gray Pei Yun Lee Jongmin Nam Paola Oliveri Joel Smith Donna Muzny Stephanie Bell Joseph Chacko Andrew Cree Stacey Curry Clay Davis Huyen Dinh Shannon Dugan-Rocha Jerry Fowler Rachel Gill Cerrissa Hamilton Judith Hernandez Sandra Hines Jennifer Hume Laronda Jackson Angela Jolivet Christie Kovar Sandra Lee Lora Lewis George Miner Margaret Morgan Lynne V Nazareth Geoffrey Okwuonu David Parker Ling-Ling Pu Rachel Thorn Rita Wright

Science 2006 Nov;314(5801):941-52

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http://dx.doi.org/10.1126/science.1133609DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3159423PMC
November 2006

Embryonic expression of engrailed in sea urchins.

Gene Expr Patterns 2006 Jun 30;6(5):566-71. Epub 2006 Jan 30.

Department of Biology, University of Victoria, 3800 Finnerty Road, Victoria, BC, Canada.

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http://dx.doi.org/10.1016/j.modgep.2005.10.004DOI Listing
June 2006

Specification of ectoderm restricts the size of the animal plate and patterns neurogenesis in sea urchin embryos.

Development 2006 Jun 10;133(12):2337-46. Epub 2006 May 10.

Department of Biology, University of Victoria, POB 3020, STN CSC, Victoria, BC, V8W 3N5, Canada.

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http://dx.doi.org/10.1242/dev.02396DOI Listing
June 2006

Neuron-specific expression of a synaptotagmin gene in the sea urchin Strongylocentrotus purpuratus.

J Comp Neurol 2006 May;496(2):244-51

Department of Biology and Biochemistry, University of Victoria, Victoria, British Columbia V8W 3N5, Canada.

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http://dx.doi.org/10.1002/cne.20939DOI Listing
May 2006

The 5-HT receptor cell is a new member of secondary mesenchyme cell descendants and forms a major blastocoelar network in sea urchin larvae.

Mech Dev 2004 Apr;121(4):325-37

Research Center for Marine Biology, Graduate School of Science, University of Tohoku, Asamushi, Aomori 039-3501, Japan.

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http://dx.doi.org/10.1016/j.mod.2004.03.005DOI Listing
April 2004

Expression of tryptophan 5-hydroxylase gene during sea urchin neurogenesis and role of serotonergic nervous system in larval behavior.

J Comp Neurol 2003 Nov;466(2):219-29

Laboratory of Developmental and Cell Biology, Marine Biological Station, Graduate School of Life Sciences, University of Tohoku, Asamushi, Aomori, Aomori 039-3501, Japan.

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http://dx.doi.org/10.1002/cne.10865DOI Listing
November 2003