Shujun Luo

Shujun Luo

UNVERIFIED PROFILE

Are you Shujun Luo?   Register this Author

Register author
Shujun Luo

Shujun Luo

Publications by authors named "Shujun Luo"

Are you Shujun Luo?   Register this Author

48Publications

2014Reads

19Profile Views

LIN28A Modulates Splicing and Gene Expression Programs in Breast Cancer Cells.

Mol Cell Biol 2015 Sep 6;35(18):3225-43. Epub 2015 Jul 6.

Chromatin and Gene Expression Section, Epigenetics and Stem Cell Biology Laboratory, National Institute of Environmental Health Sciences, National Institutes of Health, Research Triangle Park, North Carolina, USA

View Article

Download full-text PDF

Source
http://dx.doi.org/10.1128/MCB.00426-15DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4539381PMC
September 2015

Single-neuron RNA-Seq: technical feasibility and reproducibility.

Front Genet 2012 6;3:124. Epub 2012 Jul 6.

Zilkha Neurogenetic Institute, University of Southern California Los Angeles, CA, USA.

View Article

Download full-text PDF

Source
http://journal.frontiersin.org/article/10.3389/fgene.2012.00
Publisher Site
http://dx.doi.org/10.3389/fgene.2012.00124DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3407998PMC
October 2012

MicroRNA expression analysis using the Illumina microRNA-Seq Platform.

Authors:
Shujun Luo

Methods Mol Biol 2012 ;822:183-8

Illumina, Inc., Hayward, CA, USA.

View Article

Download full-text PDF

Source
http://link.springer.com/10.1007/978-1-61779-427-8_12
Publisher Site
http://dx.doi.org/10.1007/978-1-61779-427-8_12DOI Listing
April 2012

Meraculous: de novo genome assembly with short paired-end reads.

PLoS One 2011 18;6(8):e23501. Epub 2011 Aug 18.

U.S. Department of Energy Joint Genome Institute, Walnut Creek, California, United States of America.

View Article

Download full-text PDF

Source
http://journals.plos.org/plosone/article?id=10.1371/journal.pone.0023501PLOS
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3158087PMC
December 2011

Duplex-specific nuclease efficiently removes rRNA for prokaryotic RNA-seq.

Nucleic Acids Res 2011 Nov 31;39(20):e140. Epub 2011 Aug 31.

Institute of Molecular Biology and Genetics, School of Biological Sciences & Institute of Bioinformatics (BIOMAX), Seoul National University, Seoul, Republic of Korea.

View Article

Download full-text PDF

Source
http://dx.doi.org/10.1093/nar/gkr617DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3203590PMC
November 2011

RNA-ligase-dependent biases in miRNA representation in deep-sequenced small RNA cDNA libraries.

RNA 2011 Sep 20;17(9):1697-712. Epub 2011 Jul 20.

Howard Hughes Medical Institute, Laboratory for RNA Molecular Biology, The Rockefeller University, New York, New York 10065, USA.

View Article

Download full-text PDF

Source
http://dx.doi.org/10.1261/rna.2799511DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3162335PMC
September 2011

Modeling and automation of sequencing-based characterization of RNA structure.

Proc Natl Acad Sci U S A 2011 Jul 3;108(27):11069-74. Epub 2011 Jun 3.

Department of Bioengineering, University of California, Berkeley, CA 94720, USA.

View Article

Download full-text PDF

Source
http://www.pnas.org/cgi/doi/10.1073/pnas.1106541108
Publisher Site
http://dx.doi.org/10.1073/pnas.1106541108DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3131376PMC
July 2011

Direct measurement of DNA affinity landscapes on a high-throughput sequencing instrument.

Nat Biotechnol 2011 Jun 26;29(7):659-64. Epub 2011 Jun 26.

Department of Biology, Massachusetts Institute of Technology, Cambridge, Massachusetts, USA.

View Article

Download full-text PDF

Source
http://dx.doi.org/10.1038/nbt.1882DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3134637PMC
June 2011

High-throughput SuperSAGE.

Methods Mol Biol 2011 ;687:135-46

Iwate Biotechnology Research Center, Kitakami, Iwate, Japan.

View Article

Download full-text PDF

Source
http://dx.doi.org/10.1007/978-1-60761-944-4_9DOI Listing
February 2011

Noncanonical compensation of zygotic X transcription in early Drosophila melanogaster development revealed through single-embryo RNA-seq.

PLoS Biol 2011 Feb 8;9(2):e1000590. Epub 2011 Feb 8.

Department of Molecular and Cell Biology, University of California, Berkeley, California, United States of America.

View Article

Download full-text PDF

Source
https://dx.plos.org/10.1371/journal.pbio.1000590
Publisher Site
http://dx.doi.org/10.1371/journal.pbio.1000590DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3035605PMC
February 2011

Integrated analysis of gene expression, CpG island methylation, and gene copy number in breast cancer cells by deep sequencing.

PLoS One 2011 Feb 25;6(2):e17490. Epub 2011 Feb 25.

Division of Biomedical Statistics and Informatics, Department of Health Sciences Research, Mayo Clinic College of Medicine, Rochester, Minnesota, United States of America.

View Article

Download full-text PDF

Source
http://journals.plos.org/plosone/article?id=10.1371/journal.pone.0017490PLOS
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3045451PMC
February 2011

High-resolution analysis of parent-of-origin allelic expression in the mouse brain.

Science 2010 Aug 8;329(5992):643-8. Epub 2010 Jul 8.

Department of Molecular and Cellular Biology, Harvard University, Cambridge, MA 02138, USA.

View Article

Download full-text PDF

Source
http://dx.doi.org/10.1126/science.1190830DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3005244PMC
August 2010

Construction of Parallel Analysis of RNA Ends (PARE) libraries for the study of cleaved miRNA targets and the RNA degradome.

Nat Protoc 2009 ;4(3):356-62

Delaware Biotechnology Institute, University of Delaware, Newark, DE 19711, USA.

View Article

Download full-text PDF

Source
http://dx.doi.org/10.1038/nprot.2009.8DOI Listing
April 2009

Alternative isoform regulation in human tissue transcriptomes.

Nature 2008 Nov;456(7221):470-6

Department of Biology, Massachusetts Institute of Technology, Cambridge, Massachusetts 02139, USA.

View Article

Download full-text PDF

Source
http://dx.doi.org/10.1038/nature07509DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2593745PMC
November 2008

Accurate whole human genome sequencing using reversible terminator chemistry.

Authors:
David R Bentley Shankar Balasubramanian Harold P Swerdlow Geoffrey P Smith John Milton Clive G Brown Kevin P Hall Dirk J Evers Colin L Barnes Helen R Bignell Jonathan M Boutell Jason Bryant Richard J Carter R Keira Cheetham Anthony J Cox Darren J Ellis Michael R Flatbush Niall A Gormley Sean J Humphray Leslie J Irving Mirian S Karbelashvili Scott M Kirk Heng Li Xiaohai Liu Klaus S Maisinger Lisa J Murray Bojan Obradovic Tobias Ost Michael L Parkinson Mark R Pratt Isabelle M J Rasolonjatovo Mark T Reed Roberto Rigatti Chiara Rodighiero Mark T Ross Andrea Sabot Subramanian V Sankar Aylwyn Scally Gary P Schroth Mark E Smith Vincent P Smith Anastassia Spiridou Peta E Torrance Svilen S Tzonev Eric H Vermaas Klaudia Walter Xiaolin Wu Lu Zhang Mohammed D Alam Carole Anastasi Ify C Aniebo David M D Bailey Iain R Bancarz Saibal Banerjee Selena G Barbour Primo A Baybayan Vincent A Benoit Kevin F Benson Claire Bevis Phillip J Black Asha Boodhun Joe S Brennan John A Bridgham Rob C Brown Andrew A Brown Dale H Buermann Abass A Bundu James C Burrows Nigel P Carter Nestor Castillo Maria Chiara E Catenazzi Simon Chang R Neil Cooley Natasha R Crake Olubunmi O Dada Konstantinos D Diakoumakos Belen Dominguez-Fernandez David J Earnshaw Ugonna C Egbujor David W Elmore Sergey S Etchin Mark R Ewan Milan Fedurco Louise J Fraser Karin V Fuentes Fajardo W Scott Furey David George Kimberley J Gietzen Colin P Goddard George S Golda Philip A Granieri David E Green David L Gustafson Nancy F Hansen Kevin Harnish Christian D Haudenschild Narinder I Heyer Matthew M Hims Johnny T Ho Adrian M Horgan Katya Hoschler Steve Hurwitz Denis V Ivanov Maria Q Johnson Terena James T A Huw Jones Gyoung-Dong Kang Tzvetana H Kerelska Alan D Kersey Irina Khrebtukova Alex P Kindwall Zoya Kingsbury Paula I Kokko-Gonzales Anil Kumar Marc A Laurent Cynthia T Lawley Sarah E Lee Xavier Lee Arnold K Liao Jennifer A Loch Mitch Lok Shujun Luo Radhika M Mammen John W Martin Patrick G McCauley Paul McNitt Parul Mehta Keith W Moon Joe W Mullens Taksina Newington Zemin Ning Bee Ling Ng Sonia M Novo Michael J O'Neill Mark A Osborne Andrew Osnowski Omead Ostadan Lambros L Paraschos Lea Pickering Andrew C Pike Alger C Pike D Chris Pinkard Daniel P Pliskin Joe Podhasky Victor J Quijano Come Raczy Vicki H Rae Stephen R Rawlings Ana Chiva Rodriguez Phyllida M Roe John Rogers Maria C Rogert Bacigalupo Nikolai Romanov Anthony Romieu Rithy K Roth Natalie J Rourke Silke T Ruediger Eli Rusman Raquel M Sanches-Kuiper Martin R Schenker Josefina M Seoane Richard J Shaw Mitch K Shiver Steven W Short Ning L Sizto Johannes P Sluis Melanie A Smith Jean Ernest Sohna Sohna Eric J Spence Kim Stevens Neil Sutton Lukasz Szajkowski Carolyn L Tregidgo Gerardo Turcatti Stephanie Vandevondele Yuli Verhovsky Selene M Virk Suzanne Wakelin Gregory C Walcott Jingwen Wang Graham J Worsley Juying Yan Ling Yau Mike Zuerlein Jane Rogers James C Mullikin Matthew E Hurles Nick J McCooke John S West Frank L Oaks Peter L Lundberg David Klenerman Richard Durbin Anthony J Smith

Nature 2008 Nov;456(7218):53-9

Illumina Cambridge Ltd. (Formerly Solexa Ltd), Chesterford Research Park, Little Chesterford, Nr Saffron Walden, Essex CB10 1XL, UK.

View Article

Download full-text PDF

Source
http://dx.doi.org/10.1038/nature07517DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2581791PMC
November 2008

Global identification of microRNA-target RNA pairs by parallel analysis of RNA ends.

Nat Biotechnol 2008 Aug 9;26(8):941-6. Epub 2008 Jun 9.

Delaware Biotechnology Institute, University of Delaware, Newark, Delaware 19711, USA.

View Article

Download full-text PDF

Source
http://dx.doi.org/10.1038/nbt1417DOI Listing
August 2008

Highly sensitive and specific microRNA expression profiling using BeadArray technology.

Nucleic Acids Res 2008 Aug 25;36(14):e87. Epub 2008 Jun 25.

Illumina, Inc. 9885 Towne Centre Drive, San Diego, CA 92121, USA.

View Article

Download full-text PDF

Source
http://dx.doi.org/10.1093/nar/gkn387DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2504321PMC
August 2008

Elucidation of the small RNA component of the transcriptome.

Science 2005 Sep;309(5740):1567-9

Delaware Biotechnology Institute, University of Delaware, Newark, DE 19711, USA.

View Article

Download full-text PDF

Source
http://dx.doi.org/10.1126/science.1114112DOI Listing
September 2005