Shuba Gopal

Shuba Gopal

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Shuba Gopal

Shuba Gopal

Publications by authors named "Shuba Gopal"

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Parallel genome-scale loss of function screens in 216 cancer cell lines for the identification of context-specific genetic dependencies.

Sci Data 2014 30;1:140035. Epub 2014 Sep 30.

Broad Institute of Harvard and MIT, 7 Cambridge Center , Cambridge, Massachusetts 02142, USA ; Department of Medical, Dana-Farber Cancer Institute , 450 Brookline Avenue, Boston, Massachusetts 02215, USA ; Center for Cancer Genome Discovery, Dana-Farber Cancer Institute , 450 Brookline Avenue, Boston, Massachusetts 02215, USA ; Departments of Medicine, Brigham and Women's Hospital, Harvard Medical School , Boston, Massachusetts 02115, USA.

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http://www.nature.com/articles/sdata201435
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http://dx.doi.org/10.1038/sdata.2014.35DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4432652PMC
February 2016

ZFHX4 interacts with the NuRD core member CHD4 and regulates the glioblastoma tumor-initiating cell state.

Cell Rep 2014 Jan 16;6(2):313-24. Epub 2014 Jan 16.

Broad Institute of Harvard and MIT, Cambridge, MA 02142, USA; Department of Neurology, Memorial Sloan-Kettering Cancer Center, New York, NY 10065, USA; Human Oncology and Pathogenesis Program, Memorial Sloan-Kettering Cancer Center, New York, NY 10065, USA; Department of Medical Oncology, Dana-Farber Cancer Institute, Boston, MA 02115, USA.

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http://dx.doi.org/10.1016/j.celrep.2013.12.032DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4041390PMC
January 2014

Correction: genetic algorithm learning as a robust approach to RNA editing site site prediction.

BMC Bioinformatics 2006 Sep 6;7:406. Epub 2006 Sep 6.

Department of Biological Sciences, Rochester Institute of Technology, Rochester, NY 14623, USA.

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http://dx.doi.org/10.1186/1471-2105-7-406DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC1569880PMC
September 2006

A computational investigation of kinetoplastid trans-splicing.

Genome Biol 2005 17;6(11):R95. Epub 2005 Oct 17.

Laboratory of Computational Genomics, Rockefeller University, 1230 York Avenue, New York, NY 10021, USA.

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http://dx.doi.org/10.1186/gb-2005-6-11-r95DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC1297651PMC
June 2006

Genetic algorithm learning as a robust approach to RNA editing site prediction.

BMC Bioinformatics 2006 Mar 16;7:145. Epub 2006 Mar 16.

Department of Biological Sciences, Rochester Institute of Technology, Rochester, NY 14623, USA.

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http://dx.doi.org/10.1186/1471-2105-7-145DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC1459874PMC
March 2006

An organism-specific method to rank predicted coding regions in Trypanosoma brucei.

Nucleic Acids Res 2003 Oct;31(20):5877-85

Laboratory of Computational Genomics, The Rockefeller University, 1230 York Avenue, Box 250, New York, NY 10021, USA.

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http://www.ncbi.nlm.nih.gov/pmc/articles/PMC219476PMC
http://dx.doi.org/10.1093/nar/gkg798DOI Listing
October 2003